Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq536 230 2e-55 seq260 168 6e-37 seq131 154 1e-32 seq59 154 1e-32 seq58 140 3e-28 seq64 138 1e-27 seq2 120 3e-22 seq299 116 3e-21 seq30 102 8e-17 seq11673 84.2 2e-11 >seq536 Length=337149 Score = 230 bits (254), Expect = 2e-55 Identities = 513/765 (67%), Gaps = 40/765 (5%) Strand=Plus/Plus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAG 11388 ||| ||||| || ||||| || | |||| || || || ||||| || |||||||| Sbjct 201779 CACTCCCATTTTCTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAG 201838 Query 11389 TGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAA 11448 ||| |||| |||||||||| |||| ||||| | ||| ||||| | || | | | || | Sbjct 201839 TGAAATATTCTCCATAAAGTTAAATGGATTTTCTACTTTGAAAATCTTGTTAAAGCCCAG 201898 Query 11449 CTCTGTTAATAA-TCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507 || | |||| |||||||| || ||||| || ||||| ||| ||| ||||||| Sbjct 201899 CT-TCAGCATAAGCCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATTCA 201957 Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567 | || || || | | | || | || |||| | ||||||| ||||| || | |||| Sbjct 201958 TCCCAATTAGCTTCTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGCAT 202017 Query 11568 CAATGATTATCGACGTTATAACT---TCCTTAGATGGTGGATGTAATAAATGTTTAAACA 11624 |||| || | | | ||| | || |||||| || | | ||||| | || Sbjct 202018 ---TGATAATTGTTTCTTTTACTCTCTGCTCTGATGGTTTGTGAAGCAGGTGTTTGAGCA 202074 Query 11625 TTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATG 11684 | | || ||||| ||||| |||||||| || ||||| || || |||||||| ||||||| Sbjct 202075 TCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATG 202134 Query 11685 TTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAA 11744 | | || ||||||| ||||||||| | ||| ||||||| Sbjct 202135 TGAGGCCAGGCATCAGTCCTCGTTTCT----------------------TGAGCCAGAAA 202172 Query 11745 AGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TA-CCTTGTTGC 11801 |||| |||| |||| ||| ||||| ||||| || | ||||||||| || ||| ||| Sbjct 202173 AGAAGATTCTGTCCATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGT 202232 Query 11802 TAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAG 11861 ||| | | |||||| |||||||| || || || ||||||||| | | Sbjct 202233 CCCCAATCAAATGCAAGGCCCA--TGGCTTTCTTCTTCACACAAGGCATTGTTTCAGTGG 202290 Query 11862 CGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACT 11919 | || | | |||| | ||||| | ||| | | ||| || || || | | ||| Sbjct 202291 CATTGAAGAGAAATTC--CCTTTCTTTGAAGTCTTTAATATAAGTGTCAATAAGAAGACT 202348 Query 11920 ATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 ||||||||| ||||| || |||||||| || ||||| || |||||||||| || || || Sbjct 202349 ATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTC 202408 Query 11980 TGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACT 12039 || | || || || |||| ||| | |||||||| ||||| || | ||||| Sbjct 202409 TGTAATTTGAACTTCTTGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCACC 202468 Query 12040 AGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084 | ||| | || || || || || |||||| |||| ||| || Sbjct 202469 TGCCGCAGAGAAAGCCAGAATGTG-GATATAAAATATTGTTCCTC 202512 >seq260 Length=2306558 Score = 168 bits (186), Expect = 6e-37 Identities = 499/757 (66%), Gaps = 18/757 (2%) Strand=Plus/Plus Query 11301 AAAATATATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTC 11360 |||||| |||| || | ||||| | | | |||| | | ||||| |||| ||| || Sbjct 2179957 AAAATA-ATTCCCTGTTGGATTTGACATCTCTCCCACCCTCTGATACTCACCTACTT-TC 2180014 Query 11361 GT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTA 11419 | || || || ||| |||| |||| | | | |||| |||||||||| ||| | ||| Sbjct 2180015 TTCTCAAAGAAGTTAATCTTGTCTTCCATTAA-ATATTCTCCATAAAGTCAAATGAATTT 2180073 Query 11420 TATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCT 11479 | ||| |||| || || | | || | || | | || || | ||| |||||||| Sbjct 2180074 TCTACTCTGAAAACCTTGCTAAAGCCCAGCTTCATCATAAACCTGTGTGCCACGAATTCA 2180133 Query 11480 ATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTC 11539 |||||||| ||| ||| || || || || | | | ||| || | ||| | | Sbjct 2180134 ATATACTGCTTCATCAAAGTGCAGTTTATCCCAGTGAACTTCACAGGCAAAGCCTCCATG 2180193 Query 11540 AAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGAT 11599 | ||||||| ||||| | || |||| || | ||| ||| | || || Sbjct 2180194 ATGAACTCCTGTTCTAAGCTGACAGCATTGATAAATATTTCTTTTACTCTCTGCTCCAAT 2180253 Query 11600 GGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCT 11659 ||| |||| | ||||| ||||| | || ||| | ||| || ||||||| || ||| Sbjct 2180254 GGTTTGTGTAGCAGGTGTTTGAACATCAGGCAAGCAGAGTCATAAAGTAAACCCTCATCT 2180313 Query 11660 CTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAA 11719 || || || |||||| | |||| | || || ||||||||||| |||| || | | | Sbjct 2180314 CTGCTAATAAGTTCACTGGAAACT--TAGGCCAGGCATCAATCCCTGTTTCTTGAACTAG 2180371 Query 11720 AATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACT 11779 ||||| | |||| ||| || | ||||| |||| |||||||| |||| ||||| || Sbjct 2180372 AATATTGATTCAAAAGAAACATAGAAGAAGTTTCCTTCCACAGCCACAAAGGCTACAACA 2180431 Query 11780 CTTTCTCCATA--TACCTT-GTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTT 11836 | ||||| || || ||| ||| ||||| | | || ||| ||||| || Sbjct 2180432 CATTCTCTGTAGGTAGCTTCTTTGTCCCCAATCCAATGCAAGACCTAATTTGCTTTTTTC 2180491 Query 11837 TTTACGCATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTC 11894 ||||| | ||||||||| || || || | | |||| | ||||| | |||| Sbjct 2180492 TTTACATAAGGCATTGTTTCAATGGCATTGAAGAGAAATTC--CCTTTCTTTGAAATCTT 2180549 Query 11895 TTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTT 11954 | || || || || | | |||||||||||| |||| | |||| ||| || |||| Sbjct 2180550 T----TAAGTGTCAATAAGGAGACTATACATTTCACAATGTA-GTTTTTCATGGCAATTT 2180604 Query 11955 GAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTA 12014 | || |||||||||| | | |||| | || || ||| |||| ||| | | Sbjct 2180605 GGAAGTCATAGAAACAGTGAACTTCTGTAATTTGAACTTCCTGGCTTAATCACTCCACCA 2180664 Query 12015 AATTCTCATTTACAATACCATCACTAGATGCAAAAAA 12051 |||| |||||||| || |||||||| | |||||| || Sbjct 2180665 AATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 2180701 >seq131 Length=5549739 Score = 154 bits (170), Expect = 1e-32 Identities = 474/727 (65%), Gaps = 37/727 (5%) Strand=Plus/Minus Query 11363 TCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATAT 11422 || || || |||||||| ||||| ||||| ||| |||||||||| || || ||| | | Sbjct 3233575 TCAAACAAGTTAGTCTTCCCTTCCAGTGAATTATTCTCCATAAAGTCAATAG-ATTCTCT 3233517 Query 11423 ACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATA 11482 || |||| || || | | | | | ||| | | || ||| | ||| ||| || Sbjct 3233516 ACTCTGAAAACCTTGTGAAAGCTCAGCTCCAGCATGAGCCTGTCTACCACGGATTTAATG 3233457 Query 11483 TACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAA 11542 ||||| ||| ||| || ||||| ||| | || | ||| | | || | || || Sbjct 3233456 TACTGCTTCATCAAAGTGCAGTTCATCCCT-TGAGCTTCACAGCCAAGGCCCCCGTGAAG 3233398 Query 11543 AACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACT-TCCTTAGATGG 11601 ||||||| |||||| | || |||| |||||||| | | || || | || ||||| Sbjct 3233397 AACTCCTGTTCTATCCTCACAGCATTGATGATTATTG-CTTTTGCTCTCTGCTCTGATGG 3233339 Query 11602 TGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCT 11661 | ||||| | |||||||| ||| | || ||||| ||||| |||||||| | | ||| Sbjct 3233338 TTTGTGTAACAGGTGTTTAAA-ATTCAGCAGGCAAAGTCACAGTGTAAACCCTTGATTCT 3233280 Query 11662 ACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAA 11721 | || |||| ||| |||||||| | ||| || || Sbjct 3233279 GATAATAAGTTAATTGGAAAATGTGA-----GGC---------------------CAGAA 3233246 Query 11722 TATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTAC-TC 11780 ||| | |||| |||||||||||||| ||||| ||| ||| ||||| |||| || | Sbjct 3233245 TATTGACACAAAAGAACCAGAAAAGAAGATTCCTTCCGCAGTGGCAAAGGCTAAAACATG 3233186 Query 11781 TTTCTCCATATA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTT 11839 || | | || ||| ||| | ||||| | ||||||||| |||||| | || Sbjct 3233185 TTCTTGTAGGTAGCCTCTTTGTTCCCAATCCAACTCAAGGCCCAATCTGCTTTCCTCTTC 3233126 Query 11840 ACGCATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTA 11897 || || ||| |||| ||||| || | | |||| | ||||| || |||| | | Sbjct 3233125 ACACAAGGCATCCTTTCAATAGCATTGGAGAGAAATTC--CCTTTCTTTAGAATCTTTAA 3233068 Query 11898 CATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAA 11957 || || || || | | ||| ||||||| ||||| || ||||| | || | || | Sbjct 3233067 TGTAAGTGTCAATAAGGAGACTCTACATTTTAGAATGCATGTTTTCTGTGGCAACCTGGA 3233008 Query 11958 ATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAAT 12017 | ||||||||||| | | |||| | || || || |||| |||| | |||| Sbjct 3233007 AGCCATAGAAACAGCCCACTTCTGTAATTTGAACTTCTTGGCTAAATTATTCCACCAAAT 3232948 Query 12018 TCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATT 12077 | |||||| | || |||||||| | |||||| || || || | | | |||||| ||| Sbjct 3232947 TTTCATTTGCTATGCCATCACTTGCTGCAAAGAAAGCCAGGACAAGCAATATAAAATATC 3232888 Query 12078 TTTCGTC 12084 ||| || Sbjct 3232887 GTTCCTC 3232881 >seq59 Length=10161055 Score = 154 bits (170), Expect = 1e-32 Identities = 497/765 (65%), Gaps = 26/765 (3%) Strand=Plus/Minus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAG 11388 ||| |||||| | ||||| || | ||| || || ||||||||||| |||||| Sbjct 9903266 CACTCCCATCCTCTGATACTCGCCTACTA-----TCAAAGAAATTAGTCTTCCCTTCTGA 9903212 Query 11389 TGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAA 11448 ||| || | |||||||| ||| ||||| | || |||| || || | | | | || Sbjct 9903211 TGAACCATTCCCCATAAAGACAAATGGATTTTCCACTCTGAAAACCTTCTTAAAGTCCAA 9903152 Query 11449 CTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508 |||| | | || ||||| |||||||| || |||| ||| || ||| ||| | Sbjct 9903151 CTCTAGCATGAGCCTGTCTGCCACGAATTCAATGAACTGCTTCATCCAAGTACAGTTCCT 9903092 Query 11509 ACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC 11568 || || || | || || | || | || | | ||||| ||| || | || |||| Sbjct 9903091 CCCAATGAGCTTCATGGGCAAGGCCTCAGTGAGGAGCTCCTGTTCCATCCTGACAGCATT 9903032 Query 11569 AATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAA 11628 | |||||| | ||| | || ||||||| |||| | | || |||| Sbjct 9903031 GACGATTATTTATTTTACTCTCTGCTCTGATGGTGTGTGTAGCAGGTATTCGGACATCGG 9902972 Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 || ||||| ||| | |||||||| |||||||| || || |||||||| |||||||| | Sbjct 9902971 GCA-GCAAATTCAGAGTGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAAATGTGAG 9902913 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 || ||||||| | | || | | ||||||||| | |||||||| ||||||||||| Sbjct 9902912 GCCAGGCATCAGT-----TCTTATGAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAA 9902858 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTC--TTTCTCCATATACCTTGTTGCTAGAT 11806 ||| | || || || || |||| || | ||||| | || ||| || | Sbjct 9902857 GATTTCTCCCGTAGTGGCCAAGACTACAACACGTTTTCTGTAGGTAGCTTCTTTGTCCCC 9902798 Query 11807 A-TCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 | |||| ||| || || |||||||| || || || ||| |||| || || | Sbjct 9902797 AGTCCAACACAAGGCACAGTCTGCTTTCTTCTTCACCCAAGGCATCATTTCAATGGCACT 9902738 Query 11866 --AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAA----ACT 11919 | | |||| | | | | || | | ||| ||||| | | ||||| || Sbjct 9902737 GGAGAGAAATTCCCTGTCT---TAGGAATTTTTA---ATGTAAATGTCAATAAGGAGACC 9902684 Query 11920 ATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 ||| ||||| ||||| || ||||||||||| | ||| || ||| ||||||| | || || Sbjct 9902683 ATATATTTCAGAATGTATGTTTTCCATAGCAACTTGGAAGCCACAGAAACAGCCGGCTTC 9902624 Query 11980 TGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACT 12039 | | || || || ||||| | | | | ||| ||| || | || ||||||| Sbjct 9902623 TATAATTTGAACCTCTTGGCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCACG 9902564 Query 12040 AGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084 | | |||| || ||||| | |||| |||||| ||| ||| || Sbjct 9902563 TGCTTCAAAGAAAGCTAGAACATGTGATATAAAATATCATTCCTC 9902519 >seq58 Length=10378366 Score = 140 bits (154), Expect = 3e-28 Identities = 437/665 (66%), Gaps = 50/665 (8%) Strand=Plus/Plus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387 ||| || ||||| ||||| ||| |||| || | || || || |||||||| ||||| | Sbjct 1968512 CACTCCAATCTTCTGATACTCAACTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTTCCA 1968570 Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447 |||| |||| |||||||| | || ||||| | ||| |||| | || | | | Sbjct 1968571 GTGAAATATTCTCCATAATGTCAAGTGGATTTTCTACTCTGAAAA-----TCTCGATAGA 1968625 Query 11448 ACTCTGTTA----ATAATC-TATCTGCGACGAATTCTATATACTGAGACATTAAACAACA 11502 | | ||| |||| | | ||||| || ||||| || |||| ||| ||| | || Sbjct 1968626 GCCCAGTTTCAGCATAAGCCTGTCTGCTACAAATTCAATGCACTGCTTCATCAAAGAGCA 1968685 Query 11503 ATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAAC 11562 ||||| || || || | ||| || | || || | ||||||| |||||| |||| Sbjct 1968686 GTTCATCCCAATGAGCTTCACAGGCAAGGCCTTGGTGAGGAACTCCTGTTCTATCCTAAC 1968745 Query 11563 CGCATCAATGATTATCGACGTTATAACTTC--CTTAGATGGTGGATGTAATAAATGTTTA 11620 || || |||| || || | || || | ||| |||| || | ||| Sbjct 1968746 AAAATTGATAATTAC-----TTTTATCCTCTTCTCCCACAGTG--TGTAGCAAGTATTTG 1968798 Query 11621 AACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAA 11680 |||||| | || |||||||||| || ||||| || || |||||||| ||| Sbjct 1968799 AACATTGAGCAGGCAAAATCAC-----------TCATCTCTGCTAATAAGTTCATTGGAA 1968847 Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA--GCAGCAAATGAAC 11738 ||||| | || ||||||| | || ||| || | || |||||| | ||||| |||| Sbjct 1968848 AATGTGAGACCAGGCATCAGCCGTCATTTCTTAAGTCAGAATATATTGATGCAAAAGAAC 1968907 Query 11739 CAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGT 11798 |||||||||| ||| | |||||| ||||| ||||| | |||||| | | | | Sbjct 1968908 CAGAAAAGAAGATTTCTTCCACATTAGCAAAGGCTACATCATGCTCTCCACAAA--TAG- 1968964 Query 11799 TGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTA 11858 || ||||| || || |||| | |||||| || || || ||| |||| Sbjct 1968965 -ACTTTTTATCCTGATT----CCAAATCTGTTTTCTTCTTCACACAAGGCATCATTTCAG 1969019 Query 11859 TAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAA 11916 | | || | |||||| | ||||||| | || | ||| |||| | || | || Sbjct 1969020 TGCCATTGAAGATAAATTC--TTTTTCTTTGGAAT-TTTTA---ATGTGACAATAAGGAA 1969073 Query 11917 ACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGC 11976 ||| || ||| | ||||| || ||| | || || ||||| |||||||||||||| | || Sbjct 1969074 ACTGTATATTACAGAATGTATTTTTCCTATGGCAATTTGGAATCCATAGAAACAGTGGGC 1969133 Query 11977 CTCTG 11981 |||| Sbjct 1969134 TTCTG 1969138 >seq64 Length=9676502 Score = 138 bits (152), Expect = 1e-27 Identities = 111/134 (83%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| |||||||| | || ||||||| ||||||||| || Sbjct 6351545 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 6351486 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | |||||| |||||||||||||| |||||||||||||| ||||| ||| Sbjct 6351485 AGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGGCT 6351426 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 6351425 ACAACACGTTCTCC 6351412 >seq2 Length=46620681 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| |||||||| | || ||||| | |||| || | Sbjct 41377777 CTTCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCT 41377718 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| |||||||| ||||| | Sbjct 41377717 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 41377658 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 41377657 CCACCACTCTTTCCCC 41377642 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | || |||||||||| ||||| ||||| ||||| |||| ||| || || Sbjct 41372835 ATCTCTGATGTAAGTATCTATTAGCAAACTGTACATCTCTGAGTGAACATTCTCGATGAG 41372776 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 |||||||| ||||||||||| || ||||||| | ||| || ||| Sbjct 41372775 AATTTGAAAACCATAGAAACAGCGAGCCTCTGGAACCTGCACCTCC 41372730 >seq299 Length=1791600 Score = 116 bits (128), Expect = 3e-21 Identities = 217/310 (70%), Gaps = 18/310 (6%) Strand=Plus/Minus Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 || || ||||| |||||||| | ||| || || |||| || |||| ||| || ||| Sbjct 1082836 ATAAGCTCATTGGAAAATGTAAGTCCAGGGATGGGACCTCTCTTCTTTAACCAGAAAATA 1082777 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAG--CTGCAAATGCTACTACTCTTT 11783 |||||||| || || || ||||| ||||| ||||||| ||| | || || ||||||| Sbjct 1082776 GCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGAACTG--ATGGCCACCACTCTTT 1082719 Query 11784 CTCCA----TATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTT-TT 11838 | ||| || || || | ||| ||||||| |||||| || ||||| ||| || Sbjct 1082718 CCCCAAAAGTAGACTTTCTATCTA-CTATCCATCACAGGGCCCAGTCTGCTTTTTTTCTT 1082660 Query 11839 TACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATT---TTTTCTATATTATCTCT 11895 ||| || |||||||| || || ||||||||| ||| ||||| | |||||| Sbjct 1082659 AACGTATGGCATTGTTTTAATTGCATTAAATAAA--AATTCCCCTTTCT-TGGAATCTCT 1082603 Query 11896 TACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTG 11955 | | |||||||||| ||||||| || | ||| |||| ||| | || ||||| Sbjct 1082602 GATTCAAGTATCTATTAGCAAACTAT--ATCTTTGAGTGAACATTCTTTATGAGAATTTG 1082545 Query 11956 AAATCCATAG 11965 ||| ||| || Sbjct 1082544 AAAACCACAG 1082535 >seq30 Length=14751797 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| |||||||| || || ||||||||| Sbjct 820281 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATG 820340 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || ||||||||||| || || || || | Sbjct 820341 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 820400 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 820401 CTGTTTCTTACACCAT 820416 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || || || | || ||||| |||||| | ||||| | || || | | ||| Sbjct 838233 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGTGTAAACCACCTCTCAGAAAGAAGGTTA 838292 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 |||||||| ||| || |||| || || | ||||| || | |||||||||||| | | Sbjct 838293 TATGTTTCAATTGCAGCATCAATGTCTTCTTTATGAATCCCCACAGATACCCTCATCAAC 838352 Query 38533 ATATGTTGTGGTCTTTC 38549 ||||||||||||||||| Sbjct 838353 ATATGTTGTGGTCTTTC 838369 >seq11673 Length=1157 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 11320 ATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCT 11378 ||||| | ||| |||||| | ||||| || | |||| || | || || || ||||||| Sbjct 260 ATTTGACATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCT 318 Query 11379 TACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGAC 11433 | ||||||||||| |||| |||||||||| ||| ||||| | ||| ||||| || Sbjct 319 TCCCTTCTAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTTTGAAAAC 373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468451692561520