Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq536 230 2e-55
seq260 168 6e-37
seq131 154 1e-32
seq59 154 1e-32
seq58 140 3e-28
seq64 138 1e-27
seq2 120 3e-22
seq299 116 3e-21
seq30 102 8e-17
seq11673 84.2 2e-11
>seq536
Length=337149
Score = 230 bits (254), Expect = 2e-55
Identities = 513/765 (67%), Gaps = 40/765 (5%)
Strand=Plus/Plus
Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAG 11388
||| ||||| || ||||| || | |||| || || || ||||| || ||||||||
Sbjct 201779 CACTCCCATTTTCTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAG 201838
Query 11389 TGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAA 11448
||| |||| |||||||||| |||| ||||| | ||| ||||| | || | | | || |
Sbjct 201839 TGAAATATTCTCCATAAAGTTAAATGGATTTTCTACTTTGAAAATCTTGTTAAAGCCCAG 201898
Query 11449 CTCTGTTAATAA-TCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507
|| | |||| |||||||| || ||||| || ||||| ||| ||| |||||||
Sbjct 201899 CT-TCAGCATAAGCCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATTCA 201957
Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567
| || || || | | | || | || |||| | ||||||| ||||| || | ||||
Sbjct 201958 TCCCAATTAGCTTCTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGCAT 202017
Query 11568 CAATGATTATCGACGTTATAACT---TCCTTAGATGGTGGATGTAATAAATGTTTAAACA 11624
|||| || | | | ||| | || |||||| || | | ||||| | ||
Sbjct 202018 ---TGATAATTGTTTCTTTTACTCTCTGCTCTGATGGTTTGTGAAGCAGGTGTTTGAGCA 202074
Query 11625 TTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATG 11684
| | || ||||| ||||| |||||||| || ||||| || || |||||||| |||||||
Sbjct 202075 TCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATG 202134
Query 11685 TTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAA 11744
| | || ||||||| ||||||||| | ||| |||||||
Sbjct 202135 TGAGGCCAGGCATCAGTCCTCGTTTCT----------------------TGAGCCAGAAA 202172
Query 11745 AGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TA-CCTTGTTGC 11801
|||| |||| |||| ||| ||||| ||||| || | ||||||||| || ||| |||
Sbjct 202173 AGAAGATTCTGTCCATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGT 202232
Query 11802 TAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAG 11861
||| | | |||||| |||||||| || || || ||||||||| | |
Sbjct 202233 CCCCAATCAAATGCAAGGCCCA--TGGCTTTCTTCTTCACACAAGGCATTGTTTCAGTGG 202290
Query 11862 CGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACT 11919
| || | | |||| | ||||| | ||| | | ||| || || || | | |||
Sbjct 202291 CATTGAAGAGAAATTC--CCTTTCTTTGAAGTCTTTAATATAAGTGTCAATAAGAAGACT 202348
Query 11920 ATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979
||||||||| ||||| || |||||||| || ||||| || |||||||||| || || ||
Sbjct 202349 ATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTC 202408
Query 11980 TGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACT 12039
|| | || || || |||| ||| | |||||||| ||||| || | |||||
Sbjct 202409 TGTAATTTGAACTTCTTGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCACC 202468
Query 12040 AGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084
| ||| | || || || || || |||||| |||| ||| ||
Sbjct 202469 TGCCGCAGAGAAAGCCAGAATGTG-GATATAAAATATTGTTCCTC 202512
>seq260
Length=2306558
Score = 168 bits (186), Expect = 6e-37
Identities = 499/757 (66%), Gaps = 18/757 (2%)
Strand=Plus/Plus
Query 11301 AAAATATATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTC 11360
|||||| |||| || | ||||| | | | |||| | | ||||| |||| ||| ||
Sbjct 2179957 AAAATA-ATTCCCTGTTGGATTTGACATCTCTCCCACCCTCTGATACTCACCTACTT-TC 2180014
Query 11361 GT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTA 11419
| || || || ||| |||| |||| | | | |||| |||||||||| ||| | |||
Sbjct 2180015 TTCTCAAAGAAGTTAATCTTGTCTTCCATTAA-ATATTCTCCATAAAGTCAAATGAATTT 2180073
Query 11420 TATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCT 11479
| ||| |||| || || | | || | || | | || || | ||| ||||||||
Sbjct 2180074 TCTACTCTGAAAACCTTGCTAAAGCCCAGCTTCATCATAAACCTGTGTGCCACGAATTCA 2180133
Query 11480 ATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTC 11539
|||||||| ||| ||| || || || || | | | ||| || | ||| | |
Sbjct 2180134 ATATACTGCTTCATCAAAGTGCAGTTTATCCCAGTGAACTTCACAGGCAAAGCCTCCATG 2180193
Query 11540 AAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGAT 11599
| ||||||| ||||| | || |||| || | ||| ||| | || ||
Sbjct 2180194 ATGAACTCCTGTTCTAAGCTGACAGCATTGATAAATATTTCTTTTACTCTCTGCTCCAAT 2180253
Query 11600 GGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCT 11659
||| |||| | ||||| ||||| | || ||| | ||| || ||||||| || |||
Sbjct 2180254 GGTTTGTGTAGCAGGTGTTTGAACATCAGGCAAGCAGAGTCATAAAGTAAACCCTCATCT 2180313
Query 11660 CTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAA 11719
|| || || |||||| | |||| | || || ||||||||||| |||| || | | |
Sbjct 2180314 CTGCTAATAAGTTCACTGGAAACT--TAGGCCAGGCATCAATCCCTGTTTCTTGAACTAG 2180371
Query 11720 AATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACT 11779
||||| | |||| ||| || | ||||| |||| |||||||| |||| ||||| ||
Sbjct 2180372 AATATTGATTCAAAAGAAACATAGAAGAAGTTTCCTTCCACAGCCACAAAGGCTACAACA 2180431
Query 11780 CTTTCTCCATA--TACCTT-GTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTT 11836
| ||||| || || ||| ||| ||||| | | || ||| ||||| ||
Sbjct 2180432 CATTCTCTGTAGGTAGCTTCTTTGTCCCCAATCCAATGCAAGACCTAATTTGCTTTTTTC 2180491
Query 11837 TTTACGCATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTC 11894
||||| | ||||||||| || || || | | |||| | ||||| | ||||
Sbjct 2180492 TTTACATAAGGCATTGTTTCAATGGCATTGAAGAGAAATTC--CCTTTCTTTGAAATCTT 2180549
Query 11895 TTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTT 11954
| || || || || | | |||||||||||| |||| | |||| ||| || ||||
Sbjct 2180550 T----TAAGTGTCAATAAGGAGACTATACATTTCACAATGTA-GTTTTTCATGGCAATTT 2180604
Query 11955 GAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTA 12014
| || |||||||||| | | |||| | || || ||| |||| ||| | |
Sbjct 2180605 GGAAGTCATAGAAACAGTGAACTTCTGTAATTTGAACTTCCTGGCTTAATCACTCCACCA 2180664
Query 12015 AATTCTCATTTACAATACCATCACTAGATGCAAAAAA 12051
|||| |||||||| || |||||||| | |||||| ||
Sbjct 2180665 AATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 2180701
>seq131
Length=5549739
Score = 154 bits (170), Expect = 1e-32
Identities = 474/727 (65%), Gaps = 37/727 (5%)
Strand=Plus/Minus
Query 11363 TCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATAT 11422
|| || || |||||||| ||||| ||||| ||| |||||||||| || || ||| | |
Sbjct 3233575 TCAAACAAGTTAGTCTTCCCTTCCAGTGAATTATTCTCCATAAAGTCAATAG-ATTCTCT 3233517
Query 11423 ACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATA 11482
|| |||| || || | | | | | ||| | | || ||| | ||| ||| ||
Sbjct 3233516 ACTCTGAAAACCTTGTGAAAGCTCAGCTCCAGCATGAGCCTGTCTACCACGGATTTAATG 3233457
Query 11483 TACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAA 11542
||||| ||| ||| || ||||| ||| | || | ||| | | || | || ||
Sbjct 3233456 TACTGCTTCATCAAAGTGCAGTTCATCCCT-TGAGCTTCACAGCCAAGGCCCCCGTGAAG 3233398
Query 11543 AACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACT-TCCTTAGATGG 11601
||||||| |||||| | || |||| |||||||| | | || || | || |||||
Sbjct 3233397 AACTCCTGTTCTATCCTCACAGCATTGATGATTATTG-CTTTTGCTCTCTGCTCTGATGG 3233339
Query 11602 TGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCT 11661
| ||||| | |||||||| ||| | || ||||| ||||| |||||||| | | |||
Sbjct 3233338 TTTGTGTAACAGGTGTTTAAA-ATTCAGCAGGCAAAGTCACAGTGTAAACCCTTGATTCT 3233280
Query 11662 ACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAA 11721
| || |||| ||| |||||||| | ||| || ||
Sbjct 3233279 GATAATAAGTTAATTGGAAAATGTGA-----GGC---------------------CAGAA 3233246
Query 11722 TATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTAC-TC 11780
||| | |||| |||||||||||||| ||||| ||| ||| ||||| |||| || |
Sbjct 3233245 TATTGACACAAAAGAACCAGAAAAGAAGATTCCTTCCGCAGTGGCAAAGGCTAAAACATG 3233186
Query 11781 TTTCTCCATATA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTT 11839
|| | | || ||| ||| | ||||| | ||||||||| |||||| | ||
Sbjct 3233185 TTCTTGTAGGTAGCCTCTTTGTTCCCAATCCAACTCAAGGCCCAATCTGCTTTCCTCTTC 3233126
Query 11840 ACGCATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTA 11897
|| || ||| |||| ||||| || | | |||| | ||||| || |||| | |
Sbjct 3233125 ACACAAGGCATCCTTTCAATAGCATTGGAGAGAAATTC--CCTTTCTTTAGAATCTTTAA 3233068
Query 11898 CATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAA 11957
|| || || || | | ||| ||||||| ||||| || ||||| | || | || |
Sbjct 3233067 TGTAAGTGTCAATAAGGAGACTCTACATTTTAGAATGCATGTTTTCTGTGGCAACCTGGA 3233008
Query 11958 ATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAAT 12017
| ||||||||||| | | |||| | || || || |||| |||| | ||||
Sbjct 3233007 AGCCATAGAAACAGCCCACTTCTGTAATTTGAACTTCTTGGCTAAATTATTCCACCAAAT 3232948
Query 12018 TCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATT 12077
| |||||| | || |||||||| | |||||| || || || | | | |||||| |||
Sbjct 3232947 TTTCATTTGCTATGCCATCACTTGCTGCAAAGAAAGCCAGGACAAGCAATATAAAATATC 3232888
Query 12078 TTTCGTC 12084
||| ||
Sbjct 3232887 GTTCCTC 3232881
>seq59
Length=10161055
Score = 154 bits (170), Expect = 1e-32
Identities = 497/765 (65%), Gaps = 26/765 (3%)
Strand=Plus/Minus
Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAG 11388
||| |||||| | ||||| || | ||| || || ||||||||||| ||||||
Sbjct 9903266 CACTCCCATCCTCTGATACTCGCCTACTA-----TCAAAGAAATTAGTCTTCCCTTCTGA 9903212
Query 11389 TGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAA 11448
||| || | |||||||| ||| ||||| | || |||| || || | | | | ||
Sbjct 9903211 TGAACCATTCCCCATAAAGACAAATGGATTTTCCACTCTGAAAACCTTCTTAAAGTCCAA 9903152
Query 11449 CTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508
|||| | | || ||||| |||||||| || |||| ||| || ||| ||| |
Sbjct 9903151 CTCTAGCATGAGCCTGTCTGCCACGAATTCAATGAACTGCTTCATCCAAGTACAGTTCCT 9903092
Query 11509 ACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC 11568
|| || || | || || | || | || | | ||||| ||| || | || ||||
Sbjct 9903091 CCCAATGAGCTTCATGGGCAAGGCCTCAGTGAGGAGCTCCTGTTCCATCCTGACAGCATT 9903032
Query 11569 AATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAA 11628
| |||||| | ||| | || ||||||| |||| | | || ||||
Sbjct 9903031 GACGATTATTTATTTTACTCTCTGCTCTGATGGTGTGTGTAGCAGGTATTCGGACATCGG 9902972
Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688
|| ||||| ||| | |||||||| |||||||| || || |||||||| |||||||| |
Sbjct 9902971 GCA-GCAAATTCAGAGTGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAAATGTGAG 9902913
Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748
|| ||||||| | | || | | ||||||||| | |||||||| |||||||||||
Sbjct 9902912 GCCAGGCATCAGT-----TCTTATGAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAA 9902858
Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTC--TTTCTCCATATACCTTGTTGCTAGAT 11806
||| | || || || || |||| || | ||||| | || ||| || |
Sbjct 9902857 GATTTCTCCCGTAGTGGCCAAGACTACAACACGTTTTCTGTAGGTAGCTTCTTTGTCCCC 9902798
Query 11807 A-TCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865
| |||| ||| || || |||||||| || || || ||| |||| || || |
Sbjct 9902797 AGTCCAACACAAGGCACAGTCTGCTTTCTTCTTCACCCAAGGCATCATTTCAATGGCACT 9902738
Query 11866 --AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAA----ACT 11919
| | |||| | | | | || | | ||| ||||| | | ||||| ||
Sbjct 9902737 GGAGAGAAATTCCCTGTCT---TAGGAATTTTTA---ATGTAAATGTCAATAAGGAGACC 9902684
Query 11920 ATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979
||| ||||| ||||| || ||||||||||| | ||| || ||| ||||||| | || ||
Sbjct 9902683 ATATATTTCAGAATGTATGTTTTCCATAGCAACTTGGAAGCCACAGAAACAGCCGGCTTC 9902624
Query 11980 TGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACT 12039
| | || || || ||||| | | | | ||| ||| || | || |||||||
Sbjct 9902623 TATAATTTGAACCTCTTGGCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCACG 9902564
Query 12040 AGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084
| | |||| || ||||| | |||| |||||| ||| ||| ||
Sbjct 9902563 TGCTTCAAAGAAAGCTAGAACATGTGATATAAAATATCATTCCTC 9902519
>seq58
Length=10378366
Score = 140 bits (154), Expect = 3e-28
Identities = 437/665 (66%), Gaps = 50/665 (8%)
Strand=Plus/Plus
Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387
||| || ||||| ||||| ||| |||| || | || || || |||||||| ||||| |
Sbjct 1968512 CACTCCAATCTTCTGATACTCAACTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTTCCA 1968570
Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447
|||| |||| |||||||| | || ||||| | ||| |||| | || | | |
Sbjct 1968571 GTGAAATATTCTCCATAATGTCAAGTGGATTTTCTACTCTGAAAA-----TCTCGATAGA 1968625
Query 11448 ACTCTGTTA----ATAATC-TATCTGCGACGAATTCTATATACTGAGACATTAAACAACA 11502
| | ||| |||| | | ||||| || ||||| || |||| ||| ||| | ||
Sbjct 1968626 GCCCAGTTTCAGCATAAGCCTGTCTGCTACAAATTCAATGCACTGCTTCATCAAAGAGCA 1968685
Query 11503 ATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAAC 11562
||||| || || || | ||| || | || || | ||||||| |||||| ||||
Sbjct 1968686 GTTCATCCCAATGAGCTTCACAGGCAAGGCCTTGGTGAGGAACTCCTGTTCTATCCTAAC 1968745
Query 11563 CGCATCAATGATTATCGACGTTATAACTTC--CTTAGATGGTGGATGTAATAAATGTTTA 11620
|| || |||| || || | || || | ||| |||| || | |||
Sbjct 1968746 AAAATTGATAATTAC-----TTTTATCCTCTTCTCCCACAGTG--TGTAGCAAGTATTTG 1968798
Query 11621 AACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAA 11680
|||||| | || |||||||||| || ||||| || || |||||||| |||
Sbjct 1968799 AACATTGAGCAGGCAAAATCAC-----------TCATCTCTGCTAATAAGTTCATTGGAA 1968847
Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA--GCAGCAAATGAAC 11738
||||| | || ||||||| | || ||| || | || |||||| | ||||| ||||
Sbjct 1968848 AATGTGAGACCAGGCATCAGCCGTCATTTCTTAAGTCAGAATATATTGATGCAAAAGAAC 1968907
Query 11739 CAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGT 11798
|||||||||| ||| | |||||| ||||| ||||| | |||||| | | | |
Sbjct 1968908 CAGAAAAGAAGATTTCTTCCACATTAGCAAAGGCTACATCATGCTCTCCACAAA--TAG- 1968964
Query 11799 TGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTA 11858
|| ||||| || || |||| | |||||| || || || ||| ||||
Sbjct 1968965 -ACTTTTTATCCTGATT----CCAAATCTGTTTTCTTCTTCACACAAGGCATCATTTCAG 1969019
Query 11859 TAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAA 11916
| | || | |||||| | ||||||| | || | ||| |||| | || | ||
Sbjct 1969020 TGCCATTGAAGATAAATTC--TTTTTCTTTGGAAT-TTTTA---ATGTGACAATAAGGAA 1969073
Query 11917 ACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGC 11976
||| || ||| | ||||| || ||| | || || ||||| |||||||||||||| | ||
Sbjct 1969074 ACTGTATATTACAGAATGTATTTTTCCTATGGCAATTTGGAATCCATAGAAACAGTGGGC 1969133
Query 11977 CTCTG 11981
||||
Sbjct 1969134 TTCTG 1969138
>seq64
Length=9676502
Score = 138 bits (152), Expect = 1e-27
Identities = 111/134 (83%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| ||||| || || |||||||| |||||||| | || ||||||| ||||||||| ||
Sbjct 6351545 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 6351486
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| ||||| | |||||| |||||||||||||| |||||||||||||| ||||| |||
Sbjct 6351485 AGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGGCT 6351426
Query 11774 ACTACTCTTTCTCC 11787
|| || | ||||||
Sbjct 6351425 ACAACACGTTCTCC 6351412
>seq2
Length=46620681
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || |||||||| |||||||| | || ||||| | |||| || |
Sbjct 41377777 CTTCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCT 41377718
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| |||||||||||||| || || || ||||| ||||| |||||||| ||||| |
Sbjct 41377717 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 41377658
Query 11772 CTACTACTCTTTCTCC 11787
| || |||||||| ||
Sbjct 41377657 CCACCACTCTTTCCCC 41377642
Score = 84.2 bits (92), Expect = 2e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949
|||||| | || |||||||||| ||||| ||||| ||||| |||| ||| || ||
Sbjct 41372835 ATCTCTGATGTAAGTATCTATTAGCAAACTGTACATCTCTGAGTGAACATTCTCGATGAG 41372776
Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995
|||||||| ||||||||||| || ||||||| | ||| || |||
Sbjct 41372775 AATTTGAAAACCATAGAAACAGCGAGCCTCTGGAACCTGCACCTCC 41372730
>seq299
Length=1791600
Score = 116 bits (128), Expect = 3e-21
Identities = 217/310 (70%), Gaps = 18/310 (6%)
Strand=Plus/Minus
Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725
|| || ||||| |||||||| | ||| || || |||| || |||| ||| || |||
Sbjct 1082836 ATAAGCTCATTGGAAAATGTAAGTCCAGGGATGGGACCTCTCTTCTTTAACCAGAAAATA 1082777
Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAG--CTGCAAATGCTACTACTCTTT 11783
|||||||| || || || ||||| ||||| ||||||| ||| | || || |||||||
Sbjct 1082776 GCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGAACTG--ATGGCCACCACTCTTT 1082719
Query 11784 CTCCA----TATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTT-TT 11838
| ||| || || || | ||| ||||||| |||||| || ||||| ||| ||
Sbjct 1082718 CCCCAAAAGTAGACTTTCTATCTA-CTATCCATCACAGGGCCCAGTCTGCTTTTTTTCTT 1082660
Query 11839 TACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATT---TTTTCTATATTATCTCT 11895
||| || |||||||| || || ||||||||| ||| ||||| | ||||||
Sbjct 1082659 AACGTATGGCATTGTTTTAATTGCATTAAATAAA--AATTCCCCTTTCT-TGGAATCTCT 1082603
Query 11896 TACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTG 11955
| | |||||||||| ||||||| || | ||| |||| ||| | || |||||
Sbjct 1082602 GATTCAAGTATCTATTAGCAAACTAT--ATCTTTGAGTGAACATTCTTTATGAGAATTTG 1082545
Query 11956 AAATCCATAG 11965
||| ||| ||
Sbjct 1082544 AAAACCACAG 1082535
>seq30
Length=14751797
Score = 102 bits (112), Expect = 8e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | ||||| |||||||| || || |||||||||
Sbjct 820281 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATG 820340
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | | || |||| || || ||||||||||| || || || || |
Sbjct 820341 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 820400
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 820401 CTGTTTCTTACACCAT 820416
Score = 86.0 bits (94), Expect = 6e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472
|| || || || || | || ||||| |||||| | ||||| | || || | | |||
Sbjct 838233 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGTGTAAACCACCTCTCAGAAAGAAGGTTA 838292
Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532
|||||||| ||| || |||| || || | ||||| || | |||||||||||| | |
Sbjct 838293 TATGTTTCAATTGCAGCATCAATGTCTTCTTTATGAATCCCCACAGATACCCTCATCAAC 838352
Query 38533 ATATGTTGTGGTCTTTC 38549
|||||||||||||||||
Sbjct 838353 ATATGTTGTGGTCTTTC 838369
>seq11673
Length=1157
Score = 84.2 bits (92), Expect = 2e-11
Identities = 89/115 (77%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 11320 ATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCT 11378
||||| | ||| |||||| | ||||| || | |||| || | || || || |||||||
Sbjct 260 ATTTGACATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCT 318
Query 11379 TACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGAC 11433
| ||||||||||| |||| |||||||||| ||| ||||| | ||| ||||| ||
Sbjct 319 TCCCTTCTAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTTTGAAAAC 373
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468451692561520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |