Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq13 84.2 2e-11 >seq13 Length=21495731 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| ||||| | |||| || || ||||||||||| Sbjct 9191898 GTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTCTAGCTGTTTACCT 9191839 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| | |||||| | |||||||| || || ||||| || | ||| ||| ||||| ||| Sbjct 9191838 GCAAATATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGTC-TTGAAATTTTGCTTT 9191780 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| ||||||| ||||| | ||| | |||||||| ||| || Sbjct 9191779 GACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTATCAGGGT 9191720 Query 139747 TTTTACGAATATTTGCAT 139764 || || || || || || Sbjct 9191719 CTTCACAAAGATCTGAAT 9191702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495986595413600