Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq536 244 1e-59 seq260 176 4e-39 seq58 149 6e-31 seq131 140 3e-28 seq64 138 1e-27 seq59 127 2e-24 seq299 120 3e-22 seq11673 104 2e-17 seq3 95.1 1e-14 >seq536 Length=337149 Score = 244 bits (270), Expect = 1e-59 Identities = 599/900 (67%), Gaps = 40/900 (4%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13582 ||||| ||| |||| || | |||| |||||| | || | || || || || |||||||| Sbjct 201732 TAAAAGTCAGCATCCAAGGTAAAAGAATTATC-TGTTGGATTCGACATCACTCCCATTTT 201790 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | |||| || ||||||||||||||||| ||||| ||||| ||||| || Sbjct 201791 CTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAGTGAAATATTCTC 201850 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 |||||| | |||||||||| | | || | || | | | || || | | | | Sbjct 201851 CATAAAGTTAAATGGATTTTCTACTTTGAAAATCTTGTTAAAGCCCAGCTTCAGCATAAG 201910 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 ||||| || | ||| ||||| || || ||| ||| |||||||| || ||||| || Sbjct 201911 CCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATTAGCTT 201970 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 |||| | | || | || || | ||||| | || | | ||||| | Sbjct 201971 CTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGCAT---TGATAATTGT 202027 Query 13823 TG-TAATAATCTCA--TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13879 | | || |||| | || || | || ||||| | || | || ||||| Sbjct 202028 TTCTTTTACTCTCTGCTCTGATGGTTTGTGAAGCAGGTGTTTGAGCATCAGGCAGGCAAA 202087 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 ||||| || | ||||||||||| ||||||||||| || |||||||| | || ||||| Sbjct 202088 GTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCAT 202147 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 || ||||||||| || | ||| |||||||| |||| || Sbjct 202148 CAGTCCTCGTTTCTTGAGCCA----------------------GAAAAGAAGATTCTGTC 202185 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059 | |||||||| |||| | ||||||||| | | || | ||||| | ||| | | Sbjct 202186 CATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCAAATG 202245 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119 |||||| | ||| || || | | || |||||||||| | ||||| || | | | Sbjct 202246 CAAGGCCCATG--GCTTTCTTCTTCACACAAGGCATTGTTTCAGTGGCATTGAAGAGAAA 202303 Query 14120 TTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 14177 |||| | ||||| ||| || ||| || || |||||||| | |||||||||||||| Sbjct 202304 TTCCCTTTCTTTGAAGTCTTT--AATATAAGTGTCAATAAGAAGACTATACATTTCAGAA 202361 Query 14178 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACT 14237 |||||||||||||| || || || || ||||| || | | ||||| | ||| ||| Sbjct 202362 TGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAACT 202421 Query 14238 TCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAAT 14297 || | |||| || ||||||| || || ||||| | ||||| || ||| | || Sbjct 202422 TCTTGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCACCTGCCGCAGAGAAA 202481 Query 14298 GCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT-CGGATAA 14356 |||| |||| | ||||| ||||| || ||| || || || ||| | | || | Sbjct 202482 GCCAGAATGTGGAT-ATAAAATATTGTTCCTCAGGCTTCAGGGCTTCCCAGTGCTGA-AT 202539 Query 14357 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14416 ||| | | |||| | || || ||| |||||||||| ||| ||||||| ||| |||| Sbjct 202540 GTCCCT-GGAAGAGCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACACAT 202598 >seq260 Length=2306558 Score = 176 bits (194), Expect = 4e-39 Identities = 319/459 (69%), Gaps = 17/459 (4%) Strand=Plus/Plus Query 13854 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13913 || ||||| || || | || ||| | ||| || | | ||||||||||| ||||||||| Sbjct 2180266 AGGTGTTTGAACATCAGGCAAGCAGAGTCATAAAGTAAACCCTCATCTCTGCTAATAAGT 2180325 Query 13914 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA 13973 || | |||| | || || ||||||||||| |||| || ||| | ||||||| || Sbjct 2180326 TCACTGGAAACT--TAGGCCAGGCATCAATCCCTGTTTCTTGAACTAGAATATTGATTCA 2180383 Query 13974 AATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14033 || || | | ||||| |||| || || || |||| |||| | | ||||| | Sbjct 2180384 AAAGAAACATAGAAGAAGTTTCCTTCCACAGCCACAAAGGCTACAACACATTCTCTGTAG 2180443 Query 14034 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCC-ATTCAGAtttttttttAATAAAATC 14092 | |||| ||||| | ||||| | | || || | | | |||||| || | | || Sbjct 2180444 GTAGCTTCTTTGTCCCCAATCCAATG-CAAGACCTAATTTGCTTTTTTCTTTACATAAGG 2180502 Query 14093 CATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTAT---GT 14149 |||||||||||| ||||| || | | ||||| | ||||| ||||| | | || Sbjct 2180503 CATTGTTTCAATGGCATTGAAGAGAAATTCCCTTTCTTT-------GAAATCTTTTAAGT 2180555 Query 14150 ATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA 14209 |||||||| | |||||||||||| | |||| ||||| ||| || || || || |||| Sbjct 2180556 GTCAATAAGGAGACTATACATTTCACAATGTA-GTTTTTCATGGCAATTTGGAAGTCATA 2180614 Query 14210 AAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATT 14269 || || | |||| | ||| |||||| | |||| || ||||||||||||| Sbjct 2180615 GAAACAGTGAACTTCTGTAATTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCATT 2180674 Query 14270 AACTATACCATCACTAGCTGCAAA-AAATGC-CAATATG 14306 ||||| |||||||| |||||||| |||| | |||||| Sbjct 2180675 TACTATGCCATCACTTGCTGCAAAGAAATTCATAATATG 2180713 >seq58 Length=10378366 Score = 149 bits (164), Expect = 6e-31 Identities = 542/832 (65%), Gaps = 56/832 (7%) Strand=Plus/Plus Query 13572 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13631 || || || || ||||| ||| ||||| || |||||||||||||| || ||||||||| Sbjct 1968513 ACTCCAATCTTCTGATACTCAACTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGT 1968572 Query 13632 GATATATTTTCCATAAAATCAAATGGA-TTTATTGACATAAACACTTTATCACAACCTAG 13690 || ||||| ||||||| |||| |||| ||| | | ||| || || | | || || Sbjct 1968573 GAAATATTCTCCATAATGTCAAGTGGATTTTCTACTCTGAAAATCTCGAT-AGAGCCCAG 1968631 Query 13691 TTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13750 || | | | || || || | ||| ||||| | || ||| ||| || ||||| Sbjct 1968632 TTTCAGCATAAGCCTGTCTGCTACAAATTCAATGCACTGCTTCATCAAAGAGCAGTTCAT 1968691 Query 13751 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTC 13810 || || || || ||||| | ||||| | || || | |||||| | | | Sbjct 1968692 CCCAATGAGCTTCACAGGCAAGGCCTTGGTGAGGAACTCCTGTTCTAT---CCTAACAAA 1968748 Query 13811 TTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA 13870 || ||||| | | | || ||| | | || | | | | ||| || ||| | Sbjct 1968749 ATTGATAATTACTTTTATCCTCTTCTCCCA--CAGTGTGTAGCAAGTATTTGAACATTGA 1968806 Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 || ||||||||| ||||||||| ||||||||||| || |||||||| | Sbjct 1968807 GCAGGCAAAATCA-----------CTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAG 1968855 Query 13931 TCCTGGCATCAATCCTCGtttttttAACC--AAAATATTGCAGCAAATGACCCGGAAAAG 13988 || ||||||| | || ||| || | | || |||||| ||||| || || |||||| Sbjct 1968856 ACCAGGCATCAGCCGTCATTTCTTAAGTCAGAATATATTGATGCAAAAGAACCAGAAAAG 1968915 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTA-TTAATCGTTCTCCA-AACGATGCTTTTTTGT 14046 || ||| | || || |||||| |||| | || | |||||| || | ||||| Sbjct 1968916 AAGATTTCTTCCACATTAGCAAAGGCTACATCAT-GCTCTCCACAAATAGACTTTT---- 1968970 Query 14047 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14106 ||||| || || | || | ||| || || | | || ||| ||||| | Sbjct 1968971 ----TATCCTGATT----CCAAATCTGTTTTCTTCTTCACACAAGGCATCATTTCAGTGC 1969022 Query 14107 CATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 |||| || | | |||| || ||||| | | || | |||| ||||||| || || | Sbjct 1969023 CATTGAAGATAAATTCTTTTTCTTTGGAATTT----TTAATGTGACAATAAGGAAACTGT 1969078 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG 14226 | ||| |||| ||||| ||| | || || || || || ||||| || || ||||| | Sbjct 1969079 ATATTACAGAATGTATTTTTCCTATGGCAATTTGGAATCCATAGAAACAGTGGGCTTCTG 1969138 Query 14227 ACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 ||| | ||| | |||| | ||| |||| ||||||| | ||| ||||||| Sbjct 1969139 TAATTTGAATTTCTTGGCTAAATTGCTTC-ACCAATTTTTCATGTATTATGCCATCAC-- 1969195 Query 14286 GCTGCAAAAAATGCC--AATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTT 14343 |||| |||| ||| || |||| | ||||| | | ||| ||| || || || Sbjct 1969196 -CTGCTAAAA--GCCAGAACATGTGCT--ATAAAATCTCTCTCCTCAAGCTTCAGGGCTT 1969250 Query 14344 TCCAATCGGATAAA---TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 |||| || | || |||| | ||||||||||||| | |||||||||||| Sbjct 1969251 CCCAA--GGTTGAATGTTCCTGA-AAAGATCTACTTCCTTAACTGTCCAAAA 1969299 >seq131 Length=5549739 Score = 140 bits (154), Expect = 3e-28 Identities = 238/344 (69%), Gaps = 1/344 (0%) Strand=Plus/Minus Query 13958 CCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTAT 14017 ||| ||||||| |||| || || |||||||| ||||| || | | ||||| |||| Sbjct 3233251 CCAGAATATTGACACAAAAGAACCAGAAAAGAAGATTCCTTCCGCAGTGGCAAAGGCTAA 3233192 Query 14018 TAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttt 14077 | ||||| | | || | ||||||| ||||| | ||||| || | ||| Sbjct 3233191 AACATGTTCTTGTAGGTA-GCCTCTTTGTTCCCAATCCAACTCAAGGCCCAATCTGCTTT 3233133 Query 14078 ttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACT 14137 | || | | || ||| ||||||||||||| | | | ||||| | ||||||| | Sbjct 3233132 CCTCTTCACACAAGGCATCCTTTCAATAGCATTGGAGAGAAATTCCCTTTCTTTAGAATC 3233073 Query 14138 TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTAT 14197 | |||||| || |||||||| | || ||||||| ||| || |||||||| | || | Sbjct 3233072 TTTAATGTAAGTGTCAATAAGGAGACTCTACATTTTAGAATGCATGTTTTCTGTGGCAAC 3233013 Query 14198 CTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGC 14257 ||| || ||||| || || | |||| | ||| ||||| | |||| ||| | Sbjct 3233012 CTGGAAGCCATAGAAACAGCCCACTTCTGTAATTTGAACTTCTTGGCTAAATTATTCCAC 3232953 Query 14258 CAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14301 |||||||||||| |||| |||||||| |||||||| || |||| Sbjct 3232952 CAAATTTTCATTTGCTATGCCATCACTTGCTGCAAAGAAAGCCA 3232909 >seq64 Length=9676502 Score = 138 bits (152), Expect = 1e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 6351547 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 6351488 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||||| |||||| || || |||||||| |||||||| || |||||||| | Sbjct 6351487 TGAGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGG 6351428 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 6351427 CTACAACACGTTCTCC 6351412 >seq59 Length=10161055 Score = 127 bits (140), Expect = 2e-24 Identities = 365/557 (66%), Gaps = 11/557 (2%) Strand=Plus/Minus Query 13875 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13934 ||||| ||| | || | ||||| ||||| || |||||||| || |||||||| | || Sbjct 9902968 GCAAATTCAGAGTGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCA 9902909 Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATT 13994 ||||||| | || | | | ||||||||||| |||||||| || |||||||| ||| Sbjct 9902908 GGCATCAGTTCT-----TATGAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATT 9902854 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14054 | | | || || ||| | |||| || | | |||| ||||| | || Sbjct 9902853 TCTCCCGTAGTGGCCAAGACTACAACACGTTTTCTGTAGGTAGCTTCTTTGTCCCCAGTC 9902794 Query 14055 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14114 || || || || | ||| || || | || ||| ||||||| ||| | | Sbjct 9902793 CAACACAAGGCACAGTCTGCTTTCTTCTTCACCCAAGGCATCATTTCAATGGCACTGGAG 9902734 Query 14115 AAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14174 | | ||||| | |||| | | || |||||| | |||||||| | | ||| |||||| Sbjct 9902733 AGAAATTCCCTGTCTTAGGAATTTTTAATGTAAATGTCAATAAGGAGACCATATATTTCA 9902674 Query 14175 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGT 14234 || ||||||||||||||||| | || || ||| | || || | ||||| ||| Sbjct 9902673 GAATGTATGTTTTCCATAGCAACTTGGAAGCCACAGAAACAGCCGGCTTCTATAATTTGA 9902614 Query 14235 ACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14294 || || | ||||| | ||| ||||||| | |||| ||||||| ||| |||| Sbjct 9902613 ACCTCTTGGCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCACGTGCTTCAAAG 9902554 Query 14295 AATGC--CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT-CG 14351 || || || |||| | ||||| ||| || ||| || || | || | | Sbjct 9902553 AAAGCTAGAACATGTGAT--ATAAAATATCATTCCTCAGGCTTCAGGGCCTGCCGGTGCT 9902496 Query 14352 GATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTA 14411 || ||||| |||||||| || || || ||||||| || || | ||||| ||| Sbjct 9902495 GA-CTGTCCTTGGAAAGATCCACCTCCTCCGCTGTCCAGAAGGACGCCTCGGCTTTCTTA 9902437 Query 14412 TACATTACCCATATTTC 14428 |||||| ||| || || Sbjct 9902436 TACATTTGCCAAATATC 9902420 >seq299 Length=1791600 Score = 120 bits (132), Expect = 3e-22 Identities = 286/425 (67%), Gaps = 12/425 (3%) Strand=Plus/Minus Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| || |||| |||| |||||||| || ||||| ||||| | || || |||||| Sbjct 1083428 TGATACTCTGAAACTTTTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 1083369 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA-CCTAGTTCTAATAGTAA 13702 ||||||||||| |||||| || | ||| || || | | || || ||||| | ||||| Sbjct 1083368 ATAAAATCAAAGGGATTTTCTGCCTGAAAAACCTT-TGAGAATCCAAGTTCCATAAGTAA 1083310 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 ||| ||||| ||||| |||||||| || ||| ||| |||| ||||| | || || Sbjct 1083309 TCTTTCAGCTATAAATTCAATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCC 1083250 Query 13763 TACAGG-AATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAA 13821 || || || | | | |||||||| || | || || |||| | || | ||| | Sbjct 1083249 AACTGGCAAGTCT-TCTGTTAAAAACTCCTGCTCAATTTTGACAG---CATTAACAATGA 1083194 Query 13822 TTGTAATAA----TCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 13877 | | | | || | |||| || | || | | ||| | || || ||| Sbjct 1083193 TCTCCCTCACCCTTTTCTTCTGAAGTCTTATTTACTAAGTACTGAAACACTAGGCAAGCA 1083134 Query 13878 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13937 || ||| | |||| | |||||||| | || || || || |||||||| | ||| || Sbjct 1083133 AAGTCATAGAGAAGTTCTTCATCTCTGTTGATCAGCTCATTGGAAAATGTGAGTCCAGGG 1083074 Query 13938 ATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCC 13997 || |||| || |||||||| || || | |||||| || || | ||||| ||||| Sbjct 1083073 ATGGGACCTCTCTTCTTTAACCAGAAAATAGTAGCAAA-GATCCTCAGAAGAAAATTCCT 1083015 Query 13998 TCAAC 14002 || || Sbjct 1083014 TCCAC 1083010 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/217 (69%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 13908 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 13967 ||||| || || |||||||| | ||| || || |||| || |||||||| || || Sbjct 1082836 ATAAGCTCATTGGAAAATGTAAGTCCAGGGATGGGACCTCTCTTCTTTAACCAGAAAATA 1082777 Query 13968 GCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCT 14027 |||||||| || || || ||||| ||||| || || | | | || | | || ||| Sbjct 1082776 GCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGAACTGATGGCCACCACTCTTTCC 1082717 Query 14028 CCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttttttt-ttAAT 14086 ||||| | | ||| | | ||||||| ||||| || | ||||||| |||| Sbjct 1082716 CCAAAAGTAGACTTTCTATCTACTATCCATCACAGGGCCCAGTCTGCTTTTTTTCTTAAC 1082657 Query 14087 AAAATCCATTGTTTCAATAGCATTAAATAAATATTCC 14123 | |||||||| ||| |||||||||||| ||||| Sbjct 1082656 GTATGGCATTGTTTTAATTGCATTAAATAAAAATTCC 1082620 >seq11673 Length=1157 Score = 104 bits (114), Expect = 2e-17 Identities = 108/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13582 ||||| ||| |||| || | |||| |||||| | | | || || || || ||||| | Sbjct 222 TAAAAGTCAGCATCCAAGGTAAAAGAATTATC-TGTCGGATTTGACATCACTCCCATCCT 280 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||| ||||| ||||| || Sbjct 281 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTCTC 340 Query 13643 CATAAAATCAAATGGATTT 13661 |||||| |||||||||||| Sbjct 341 CATAAAGTCAAATGGATTT 359 >seq3 Length=41493964 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 11314 AACATTT-AACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGAGCCACC 11372 |||| || |||||||| || | |||||| | |||| |||| | || || | Sbjct 8287227 AACACTTGAACTTCTTCTATATCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCTATT 8287286 Query 11373 CGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCAATG 11432 ||||| ||| |||| | | ||| | | ||||||| ||||| || | ||| ||||| Sbjct 8287287 CGATCACCTTTTTTTACTTCAAACTTCTCTTTACCAAAATTAAACAACACAACACCAATA 8287346 Query 11433 TTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATATAACGAA 11492 || || ||||||||||||||||| || || |||||| ||||||| || | | | Sbjct 8287347 TTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTATTTTGCAGCC 8287406 Query 11493 AGACCAGACCTTGGCGCTATTCGTCCATAACA 11524 || ||||| | ||| ||||||| |||||| || Sbjct 8287407 AGGCCAGAACGTGGAGCTATTCTTCCATAGCA 8287438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479653144442200