Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq536 221 1e-52 seq260 154 1e-32 seq64 132 5e-26 seq299 114 1e-20 seq3 100 3e-16 >seq536 Length=337149 Score = 221 bits (244), Expect = 1e-52 Identities = 596/901 (66%), Gaps = 42/901 (5%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13370 ||||| ||| |||| || | |||| |||||| | || | || || || || |||||||| Sbjct 201732 TAAAAGTCAGCATCCAAGGTAAAAGAATTATC-TGTTGGATTCGACATCACTCCCATTTT 201790 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | |||| || ||||| ||||||||||| ||||| ||||| ||||| || Sbjct 201791 CTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAGTGAAATATTCTC 201850 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 |||||| | ||||||||| | | || | || | | | || || | | | |||| Sbjct 201851 CATAAAGTTAAATGGATTTTCTACTTTGAAAATCTTGTTAAAGCCCAGCT-TCAGCATAA 201909 Query 13491 TC-TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13549 | |||| || | ||| ||||| || || ||| ||| |||||||| || ||||| | Sbjct 201910 GCCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATTAGCT 201969 Query 13550 TTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609 | |||| | | || | || || | ||||| | || | | | || | Sbjct 201970 TCTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGCATTGATAATTGTT- 202028 Query 13610 TCTTAATAATGTCA--TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13667 |||| || | || | || || | || ||||| | || | || ||||| Sbjct 202029 TCTTT-TACTCTCTGCTCTGATGGTTTGTGAAGCAGGTGTTTGAGCATCAGGCAGGCAAA 202087 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 ||||| || | ||||||||||| ||||||||||| || |||||||| | || ||||| Sbjct 202088 GTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCAT 202147 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787 || ||||||||| || | ||| |||||||| |||| || Sbjct 202148 CAGTCCTCGTTTCTTGAGCCA----------------------GAAAAGAAGATTCTGTC 202185 Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTT 13847 | |||||||| |||| | ||||||||| | | || | ||||| ||| | | Sbjct 202186 CATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCAAATG 202245 Query 13848 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATG 13907 |||||| | ||| || || | | || ||||||||| | |||||||| | | Sbjct 202246 CAAGGCCCATG--GCTTTCTTCTTCACACAAGGCATTGTTTCAGTGGCATTGAAGAGAAA 202303 Query 13908 TTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 13965 |||| | ||||| ||| || ||| || || |||||||| | |||||||||||||| Sbjct 202304 TTCCCTTTCTTTGAAGTCTTT--AATATAAGTGTCAATAAGAAGACTATACATTTCAGAA 202361 Query 13966 TGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACC 14025 ||||||||||| || || || || || ||||| |||| | ||||||| ||| || Sbjct 202362 TGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAACT 202421 Query 14026 TCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAAT 14085 || | |||| || |||| || || || || || | ||||| || ||| | || Sbjct 202422 TCTTGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCACCTGCCGCAGAGAAA 202481 Query 14086 GCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAA 14145 |||| |||| | ||||| ||||| || ||| || || || ||| | ||| || Sbjct 202482 GCCAGAATGTGGAT-ATAAAATATTGTTCCTCAGGCTTCAGGGCTTCCCAGT--GCTGAA 202538 Query 14146 --TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACA 14203 ||| | | |||| | || || ||| |||||||||| ||| ||||||| ||| ||| Sbjct 202539 TGTCCCT-GGAAGAGCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACACA 202597 Query 14204 T 14204 | Sbjct 202598 T 202598 >seq260 Length=2306558 Score = 154 bits (170), Expect = 1e-32 Identities = 314/459 (68%), Gaps = 17/459 (4%) Strand=Plus/Plus Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701 || ||||| || || | || ||| | ||| || | | ||||||||||| ||||||||| Sbjct 2180266 AGGTGTTTGAACATCAGGCAAGCAGAGTCATAAAGTAAACCCTCATCTCTGCTAATAAGT 2180325 Query 13702 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 13761 || | |||| ||| || ||||||||||| |||| || ||| | ||||||| | Sbjct 2180326 TCACTGGAAA--CTTAGGCCAGGCATCAATCCCTGTTTCTTGAACTAGAATATTGATTCA 2180383 Query 13762 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAAC 13821 || || | | ||||| |||| || || || |||| |||| | | ||||| | Sbjct 2180384 AAAGAAACATAGAAGAAGTTTCCTTCCACAGCCACAAAGGCTACAACACATTCTCTGTAG 2180443 Query 13822 GATGCTTTTTTGTTTGATATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATC 13880 | |||| ||||| ||||| | | || || | | | |||||| || | | || Sbjct 2180444 GTAGCTTCTTTGTCCCCAATCCA-ATGCAAGACCTAATTTGCTTTTTTCTTTACATAAGG 2180502 Query 13881 CATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAA---TGTATGT 13937 ||||||||| || |||||||| | | |||| | ||| |||||| | || || Sbjct 2180503 CATTGTTTCAATGGCATTGAAGAGAAATTCCCTTTCT-------TTGAAATCTTTTAAGT 2180555 Query 13938 ATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATA 13997 |||||||| | |||||||||||| | |||| ||||| || || || || || |||| Sbjct 2180556 GTCAATAAGGAGACTATACATTTCACAATGTA-GTTTTTCATGGCAATTTGGAAGTCATA 2180614 Query 13998 AAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATT 14057 ||||| | |||||| ||| || ||| | |||| || |||| |||||||| Sbjct 2180615 GAAACAGTGAACTTCTGTAATTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCATT 2180674 Query 14058 AACAATACCATCACTAGCTGCAAA-AAATGC-CAATATG 14094 || || |||||||| |||||||| |||| | |||||| Sbjct 2180675 TACTATGCCATCACTTGCTGCAAAGAAATTCATAATATG 2180713 >seq64 Length=9676502 Score = 132 bits (146), Expect = 5e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 6351547 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 6351488 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||||| ||| || || || |||||||| |||||||| || |||||||| | Sbjct 6351487 TGAGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGG 6351428 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 6351427 CTACAACACGTTCTCC 6351412 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 |||||| || |||||||| | |||||||||||||| ||||||||||| || || || || Sbjct 6349672 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 6349613 Query 13989 AAAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | ||||||| Sbjct 6349612 GAAGCCATAGAAACAGCGGGCTTCTG 6349587 >seq299 Length=1791600 Score = 114 bits (126), Expect = 1e-20 Identities = 285/425 (67%), Gaps = 12/425 (3%) Strand=Plus/Minus Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||| || |||| |||| ||||| || || ||||| ||||| | || || |||||| Sbjct 1083428 TGATACTCTGAAACTTTTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 1083369 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA-CCTAGTTCTAATAATAA 13490 |||||||| || |||||| || | ||| || || | | || || ||||| | | ||| Sbjct 1083368 ATAAAATCAAAGGGATTTTCTGCCTGAAAAACCTT-TGAGAATCCAAGTTCCATAAGTAA 1083310 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 ||| ||||| ||||| |||||||| || ||| ||| |||| ||||| | || || Sbjct 1083309 TCTTTCAGCTATAAATTCAATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCC 1083250 Query 13551 TACAGG-AATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609 || || || | | | |||||||| || | || || |||| | || | ||| | Sbjct 1083249 AACTGGCAAGTCT-TCTGTTAAAAACTCCTGCTCAATTTTGACAG---CATTAACAATGA 1083194 Query 13610 TCTTAATAA----TGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 13665 ||| | | | || | |||| || | || | | ||| | || || ||| Sbjct 1083193 TCTCCCTCACCCTTTTCTTCTGAAGTCTTATTTACTAAGTACTGAAACACTAGGCAAGCA 1083134 Query 13666 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13725 || ||| | |||| | |||||||| | || || || || |||||||| | ||| || Sbjct 1083133 AAGTCATAGAGAAGTTCTTCATCTCTGTTGATCAGCTCATTGGAAAATGTGAGTCCAGGG 1083074 Query 13726 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 13785 || |||| || |||||||| || || | ||| || ||||| | ||||| ||||| Sbjct 1083073 ATGGGACCTCTCTTCTTTAACCAGAAAATAGTAGC-AAAGATCCTCAGAAGAAAATTCCT 1083015 Query 13786 TCAAC 13790 || || Sbjct 1083014 TCCAC 1083010 >seq3 Length=41493964 Score = 100 bits (110), Expect = 3e-16 Identities = 150/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 11128 AACATTT-AACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGTGCCACT 11186 |||| || |||||||| || | |||||| | |||| |||| | ||||| | | Sbjct 8287227 AACACTTGAACTTCTTCTATATCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCTATT 8287286 Query 11187 CGATCGCCTCTTTTAATATTAAATGTATTTTTACTATTATTAATAAATATAACTCCAATG 11246 ||||| ||| |||| | | ||| | | ||||| | ||||| || | ||| ||||| Sbjct 8287287 CGATCACCTTTTTTTACTTCAAACTTCTCTTTACCAAAATTAAACAACACAACACCAATA 8287346 Query 11247 TTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATATAACGAA 11306 || || ||||||||||||||||| || || |||||| ||||||| || | | | Sbjct 8287347 TTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTATTTTGCAGCC 8287406 Query 11307 AGACCAGACCTTGGCGCTATTCGTCCATAACA 11338 || ||||| | ||| ||||||| |||||| || Sbjct 8287407 AGGCCAGAACGTGGAGCTATTCTTCCATAGCA 8287438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478514122200120