Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq536 221 1e-52
seq260 154 1e-32
seq64 132 5e-26
seq299 114 1e-20
seq3 100 3e-16
>seq536
Length=337149
Score = 221 bits (244), Expect = 1e-52
Identities = 596/901 (66%), Gaps = 42/901 (5%)
Strand=Plus/Plus
Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13370
||||| ||| |||| || | |||| |||||| | || | || || || || ||||||||
Sbjct 201732 TAAAAGTCAGCATCCAAGGTAAAAGAATTATC-TGTTGGATTCGACATCACTCCCATTTT 201790
Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430
||||| || | |||| || ||||| ||||||||||| ||||| ||||| ||||| ||
Sbjct 201791 CTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAGTGAAATATTCTC 201850
Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490
|||||| | ||||||||| | | || | || | | | || || | | | ||||
Sbjct 201851 CATAAAGTTAAATGGATTTTCTACTTTGAAAATCTTGTTAAAGCCCAGCT-TCAGCATAA 201909
Query 13491 TC-TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13549
| |||| || | ||| ||||| || || ||| ||| |||||||| || ||||| |
Sbjct 201910 GCCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATTAGCT 201969
Query 13550 TTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609
| |||| | | || | || || | ||||| | || | | | || |
Sbjct 201970 TCTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGCATTGATAATTGTT- 202028
Query 13610 TCTTAATAATGTCA--TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13667
|||| || | || | || || | || ||||| | || | || |||||
Sbjct 202029 TCTTT-TACTCTCTGCTCTGATGGTTTGTGAAGCAGGTGTTTGAGCATCAGGCAGGCAAA 202087
Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727
||||| || | ||||||||||| ||||||||||| || |||||||| | || |||||
Sbjct 202088 GTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCAT 202147
Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787
|| ||||||||| || | ||| |||||||| |||| ||
Sbjct 202148 CAGTCCTCGTTTCTTGAGCCA----------------------GAAAAGAAGATTCTGTC 202185
Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTT 13847
| |||||||| |||| | ||||||||| | | || | ||||| ||| | |
Sbjct 202186 CATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCAAATG 202245
Query 13848 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATG 13907
|||||| | ||| || || | | || ||||||||| | |||||||| | |
Sbjct 202246 CAAGGCCCATG--GCTTTCTTCTTCACACAAGGCATTGTTTCAGTGGCATTGAAGAGAAA 202303
Query 13908 TTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 13965
|||| | ||||| ||| || ||| || || |||||||| | ||||||||||||||
Sbjct 202304 TTCCCTTTCTTTGAAGTCTTT--AATATAAGTGTCAATAAGAAGACTATACATTTCAGAA 202361
Query 13966 TGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACC 14025
||||||||||| || || || || || ||||| |||| | ||||||| ||| ||
Sbjct 202362 TGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAACT 202421
Query 14026 TCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAAT 14085
|| | |||| || |||| || || || || || | ||||| || ||| | ||
Sbjct 202422 TCTTGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCACCTGCCGCAGAGAAA 202481
Query 14086 GCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAA 14145
|||| |||| | ||||| ||||| || ||| || || || ||| | ||| ||
Sbjct 202482 GCCAGAATGTGGAT-ATAAAATATTGTTCCTCAGGCTTCAGGGCTTCCCAGT--GCTGAA 202538
Query 14146 --TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACA 14203
||| | | |||| | || || ||| |||||||||| ||| ||||||| ||| |||
Sbjct 202539 TGTCCCT-GGAAGAGCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACACA 202597
Query 14204 T 14204
|
Sbjct 202598 T 202598
>seq260
Length=2306558
Score = 154 bits (170), Expect = 1e-32
Identities = 314/459 (68%), Gaps = 17/459 (4%)
Strand=Plus/Plus
Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701
|| ||||| || || | || ||| | ||| || | | ||||||||||| |||||||||
Sbjct 2180266 AGGTGTTTGAACATCAGGCAAGCAGAGTCATAAAGTAAACCCTCATCTCTGCTAATAAGT 2180325
Query 13702 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 13761
|| | |||| ||| || ||||||||||| |||| || ||| | ||||||| |
Sbjct 2180326 TCACTGGAAA--CTTAGGCCAGGCATCAATCCCTGTTTCTTGAACTAGAATATTGATTCA 2180383
Query 13762 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAAC 13821
|| || | | ||||| |||| || || || |||| |||| | | ||||| |
Sbjct 2180384 AAAGAAACATAGAAGAAGTTTCCTTCCACAGCCACAAAGGCTACAACACATTCTCTGTAG 2180443
Query 13822 GATGCTTTTTTGTTTGATATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATC 13880
| |||| ||||| ||||| | | || || | | | |||||| || | | ||
Sbjct 2180444 GTAGCTTCTTTGTCCCCAATCCA-ATGCAAGACCTAATTTGCTTTTTTCTTTACATAAGG 2180502
Query 13881 CATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAA---TGTATGT 13937
||||||||| || |||||||| | | |||| | ||| |||||| | || ||
Sbjct 2180503 CATTGTTTCAATGGCATTGAAGAGAAATTCCCTTTCT-------TTGAAATCTTTTAAGT 2180555
Query 13938 ATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATA 13997
|||||||| | |||||||||||| | |||| ||||| || || || || || ||||
Sbjct 2180556 GTCAATAAGGAGACTATACATTTCACAATGTA-GTTTTTCATGGCAATTTGGAAGTCATA 2180614
Query 13998 AAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATT 14057
||||| | |||||| ||| || ||| | |||| || |||| ||||||||
Sbjct 2180615 GAAACAGTGAACTTCTGTAATTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCATT 2180674
Query 14058 AACAATACCATCACTAGCTGCAAA-AAATGC-CAATATG 14094
|| || |||||||| |||||||| |||| | ||||||
Sbjct 2180675 TACTATGCCATCACTTGCTGCAAAGAAATTCATAATATG 2180713
>seq64
Length=9676502
Score = 132 bits (146), Expect = 5e-26
Identities = 111/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741
|||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| |
Sbjct 6351547 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 6351488
Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801
| | ||| ||||||| ||| || || || |||||||| |||||||| || |||||||| |
Sbjct 6351487 TGAGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGG 6351428
Query 13802 CTATTAGTCGTTCTCC 13817
||| | ||||||||
Sbjct 6351427 CTACAACACGTTCTCC 6351412
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988
|||||| || |||||||| | |||||||||||||| ||||||||||| || || || ||
Sbjct 6349672 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 6349613
Query 13989 AAAACCATAAAAACATCTAGCTTCTG 14014
|| ||||| ||||| | |||||||
Sbjct 6349612 GAAGCCATAGAAACAGCGGGCTTCTG 6349587
>seq299
Length=1791600
Score = 114 bits (126), Expect = 1e-20
Identities = 285/425 (67%), Gaps = 12/425 (3%)
Strand=Plus/Minus
Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431
||||| || |||| |||| ||||| || || ||||| ||||| | || || ||||||
Sbjct 1083428 TGATACTCTGAAACTTTTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 1083369
Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA-CCTAGTTCTAATAATAA 13490
|||||||| || |||||| || | ||| || || | | || || ||||| | | |||
Sbjct 1083368 ATAAAATCAAAGGGATTTTCTGCCTGAAAAACCTT-TGAGAATCCAAGTTCCATAAGTAA 1083310
Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550
||| ||||| ||||| |||||||| || ||| ||| |||| ||||| | || ||
Sbjct 1083309 TCTTTCAGCTATAAATTCAATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCC 1083250
Query 13551 TACAGG-AATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609
|| || || | | | |||||||| || | || || |||| | || | ||| |
Sbjct 1083249 AACTGGCAAGTCT-TCTGTTAAAAACTCCTGCTCAATTTTGACAG---CATTAACAATGA 1083194
Query 13610 TCTTAATAA----TGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 13665
||| | | | || | |||| || | || | | ||| | || || |||
Sbjct 1083193 TCTCCCTCACCCTTTTCTTCTGAAGTCTTATTTACTAAGTACTGAAACACTAGGCAAGCA 1083134
Query 13666 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13725
|| ||| | |||| | |||||||| | || || || || |||||||| | ||| ||
Sbjct 1083133 AAGTCATAGAGAAGTTCTTCATCTCTGTTGATCAGCTCATTGGAAAATGTGAGTCCAGGG 1083074
Query 13726 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 13785
|| |||| || |||||||| || || | ||| || ||||| | ||||| |||||
Sbjct 1083073 ATGGGACCTCTCTTCTTTAACCAGAAAATAGTAGC-AAAGATCCTCAGAAGAAAATTCCT 1083015
Query 13786 TCAAC 13790
|| ||
Sbjct 1083014 TCCAC 1083010
>seq3
Length=41493964
Score = 100 bits (110), Expect = 3e-16
Identities = 150/212 (71%), Gaps = 1/212 (0%)
Strand=Plus/Plus
Query 11128 AACATTT-AACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGTGCCACT 11186
|||| || |||||||| || | |||||| | |||| |||| | ||||| | |
Sbjct 8287227 AACACTTGAACTTCTTCTATATCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCTATT 8287286
Query 11187 CGATCGCCTCTTTTAATATTAAATGTATTTTTACTATTATTAATAAATATAACTCCAATG 11246
||||| ||| |||| | | ||| | | ||||| | ||||| || | ||| |||||
Sbjct 8287287 CGATCACCTTTTTTTACTTCAAACTTCTCTTTACCAAAATTAAACAACACAACACCAATA 8287346
Query 11247 TTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATATAACGAA 11306
|| || ||||||||||||||||| || || |||||| ||||||| || | | |
Sbjct 8287347 TTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTATTTTGCAGCC 8287406
Query 11307 AGACCAGACCTTGGCGCTATTCGTCCATAACA 11338
|| ||||| | ||| ||||||| |||||| ||
Sbjct 8287407 AGGCCAGAACGTGGAGCTATTCTTCCATAGCA 8287438
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478514122200120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |