Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq536 264 2e-65 seq260 172 7e-38 seq131 172 7e-38 seq58 168 9e-37 seq59 161 1e-34 seq64 120 4e-22 seq30 120 4e-22 seq3 109 7e-19 seq11673 86.0 8e-12 >seq536 Length=337149 Score = 264 bits (292), Expect = 2e-65 Identities = 627/944 (66%), Gaps = 40/944 (4%) Strand=Plus/Plus Query 41712 TGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTC 41768 |||| ||||||||||| |||| || | |||| ||| ||| | || ||||| |||| Sbjct 201724 TGTTCATTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTC 201783 Query 41769 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATA 41828 ||||||| || || || || || | || || || || ||||| || ||||| | ||| | Sbjct 201784 CCATTTTCTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAGTGAAA 201843 Query 41829 TATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAA-TTCA 41887 |||| ||||| || | ||| ||||| || || |||| || ||||| |||| |||| Sbjct 201844 TATTCTCCATAAAGTTAAATGGATTTTCTACTTTGAAAATCTTGTTAAAGCCCAGCTTCA 201903 Query 41888 GAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCT 41947 | | | | |||||||| | ||||| || || ||||||| |||||||| || Sbjct 201904 GCA-TAAGCCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCA 201962 Query 41948 ATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTT 42007 || || || | || | || | || || || || || || || || || | | Sbjct 201963 ATTAGCTTCTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGCAT---TG 202019 Query 42008 ATAATAGATC---TTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAA 42064 ||||| | | ||||| | | || ||| | | | ||||| | ||||| Sbjct 202020 ATAATTGTTTCTTTTACTCTCTGCTCTGATGGTTTGTGAAGCAGGTGTTTGAGCATCAGG 202079 Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || || ||||| | |||||||||||| ||||| | ||| |||||||| ||||| Sbjct 202080 CAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 202139 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| || || || || || ||||| ||||||||| Sbjct 202140 CCAGGCATCAGTCCTCGTTTCTTGAGCCA----------------------GAAAAGAAG 202177 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGT 42241 |||| || | || |||||||| | || | |||||||| | | | |||| Sbjct 202178 ATTCTGTCCATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCA 202237 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||| | | ||||| ||| ||||| || ||||||||||| ||||| ||||||| Sbjct 202238 ATCAAATGCAAGGCCCAT--GGCTTTCTTCTTCACACAAGGCATTGTTTCAGTGGCATTG 202295 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 |||||| | | |||| || ||||||| ||| || || || | ||||||||||||| Sbjct 202296 AAGAGAAATTCCCTTTCTTTGAAGTCTTTAATATAAGTGTCAATAAGAAGACTATACATT 202355 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || ||||| |||||||| ||||| || || || || ||||||| | ||| || |||| Sbjct 202356 TCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATT 202415 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 || |||||| | |||| | || | ||||| || || ||||| | |||| || ||| Sbjct 202416 TGAACTTCTTGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCACCTGCCGCA 202475 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCA 42541 | || |||| | || ||||||||||| ||| || || | | | ||| | Sbjct 202476 GAGAAAGCCAGAATGTG-GATATAAAATATTGTTCCTCAGGCTTCAGGGCTTCCCAGTGC 202534 Query 42542 TTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTA 42601 | || || | || | | | || || || | |||||||| || || || || || ||| Sbjct 202535 TGAATGTCCCTGGA-AGAGCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTA 202593 Query 42602 TACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 |||| | || |||| |||| | || || || || || || || Sbjct 202594 CACATCTGCCGGATACCATGGTGTTCCATAGGAAAGATGACCAA 202637 >seq260 Length=2306558 Score = 172 bits (190), Expect = 7e-38 Identities = 605/928 (65%), Gaps = 24/928 (3%) Strand=Plus/Plus Query 41709 TTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAA 41765 || |||| |||| |||||| |||| || | ||||| ||| || | || ||||| Sbjct 2179926 TTCTGTTCATTTAGAAGTCAGCATCCAAGGTAAAATAATTCCCTGTTGGATTTGACATCT 2179985 Query 41766 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATG 41825 |||||| | || || ||||| || || || || || ||| |||| |||||| | Sbjct 2179986 CTCCCACCCTCTGATACTCACCTACTTTCTTCTCAAAGAAGTTAATCTTGTCTTCCATTA 2180045 Query 41826 ATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAA-T 41884 | ||||| ||||| || ||||| | ||| || | ||| || |||| |||| | Sbjct 2180046 A-ATATTCTCCATAAAGTCAAATGAATTTTCTACTCTGAAAACCTTGCTAAAGCCCAGCT 2180104 Query 41885 TCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATT 41944 ||| | | || || | ||| | |||||| ||||| ||||||| || || || Sbjct 2180105 TCATCA-TAAACCTGTGTGCCACGAATTCAATATACTGCTTCATCAAAGTGCAGTTTATC 2180163 Query 41945 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 42004 || | | || || || | |||| | | | || || ||||| | ||| || | | Sbjct 2180164 CCAGTGAACTTCACAGGCAAAGCCTCCATGATGAACTCCTGTTCTAAGCTGACAGCAT-T 2180222 Query 42005 GTTATAATAGATCTT--ACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAACATC 42061 | || |||| |||| ||| | | || || | | | | | | | ||||| |||||| Sbjct 2180223 GATA-AATATTTCTTTTACTCTCTGCTCCAATGGTTTG-TGTAGCAGGTGTTTGAACATC 2180280 Query 42062 AAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTG 42121 | || || | || | | | |||||||||||| ||||| | ||| |||||| | Sbjct 2180281 AGGCAAGCAGAGTCATAAAGTAAACCCTCATCTCTGCTAATAAGTTCACTGGAAAC--TT 2180338 Query 42122 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAG 42181 || || ||||| | || | || || | | | ||||| || |||| || || | ||| Sbjct 2180339 AGGCCAGGCATCAATCCCTGTTTCTTGAACTAGAATATTGATTCAAAAGAAACATAGAAG 2180398 Query 42182 AAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCA 42238 ||| ||||||| || ||| ||||||| | || | |||| || | | | |||| Sbjct 2180399 AAGTTTCCTTCCACAGCCACAAAGGCTACAACACATTCTCTGTAGGTAGCTTCTTTGTCC 2180458 Query 42239 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 42298 ||||| | || ||| || || || |||||| ||||||| ||||| |||||| Sbjct 2180459 CCAATCCAATGCAAGACCTAATTTGCTTTTTTCTTTACATAAGGCATTGTTTCAATGGCA 2180518 Query 42299 TTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATAC 42358 || |||||| | | |||| || |||||| || || || || | ||||||||| Sbjct 2180519 TTGAAGAGAAATTCCCTTTCTTTGAAATCTTT----TAAGTGTCAATAAGGAGACTATAC 2180574 Query 42359 ATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTA 42418 ||||| |||| | ||||| ||||| || || || | |||||||| | || ||| Sbjct 2180575 ATTTCACAATGTA-GTTTTTCATGGCAATTTGGAAGTCATAGAAACAGTGAACTTCTGTA 2180633 Query 42419 ACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCT 42478 | || ||||| | |||| || | |||||||| || ||||| || ||||| ||| Sbjct 2180634 ATTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTACTATGCCATCACTTGCT 2180693 Query 42479 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCC-A 42537 ||||| || || | ||| ||||||||| ||| || | | || | |||| | Sbjct 2180694 GCAAAGAAATTCATAATATGAGACATAAAATATCATTCCTCAGAT-TTCAGGGCTTCCTA 2180752 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 | || || || || ||| | || || | ||| |||| || |||| ||||| Sbjct 2180753 GTGCAGAATGTCCTTGGAAATAGCCACCTCCCCATATGTCAAAAAGGAACCTTCAGCCTT 2180812 Query 42598 TTTATACATATTCCAGATATCATGATAT 42625 ||| | || | ||| |||||||| ||| Sbjct 2180813 CTTAGAAATCTGCCAAATATCATGGTAT 2180840 >seq131 Length=5549739 Score = 172 bits (190), Expect = 7e-38 Identities = 265/376 (70%), Gaps = 4/376 (1%) Strand=Plus/Minus Query 42150 GCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAA 42209 |||| ||||| ||| |||| || |||||||||||||||||||| | | |||||||| | Sbjct 3233252 GCCAGAATATTGACACAAAAGAACCAGAAAAGAAGATTCCTTCCGCAGTGGCAAAGGCTA 3233193 Query 42210 TAA---GTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCT 42266 || || | | || || | ||| ||||| | |||||||| || | Sbjct 3233192 AAACATGTTCTTGTAGGTAGCCT-CTTTGTTCCCAATCCAACTCAAGGCCCAATCTGCTT 3233134 Query 42267 TCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTAT 42326 || | || |||||||||||| |||| || ||||| ||||| | | |||| ||| || Sbjct 3233133 TCCTCTTCACACAAGGCATCCTTTCAATAGCATTGGAGAGAAATTCCCTTTCTTTAGAAT 3233074 Query 42327 CTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCA 42386 |||||| || || || || | ||||| ||||||| ||||| |||||||| |||| | Sbjct 3233073 CTTTAATGTAAGTGTCAATAAGGAGACTCTACATTTTAGAATGCATGTTTTCTGTGGCAA 3233014 Query 42387 TCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAG 42446 ||| || || |||||||| | | || |||| || |||||| | |||| ||| Sbjct 3233013 CCTGGAAGCCATAGAAACAGCCCACTTCTGTAATTTGAACTTCTTGGCTAAATTATTCCA 3232954 Query 42447 CTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 42506 | |||||||| || |||| || ||||| |||||||| || |||| ||| | ||||| Sbjct 3232953 CCAAATTTTCATTTGCTATGCCATCACTTGCTGCAAAGAAAGCCAGGACAAGCAATATAA 3232894 Query 42507 AATATTTTTCGTCCGG 42522 ||||| ||| || || Sbjct 3232893 AATATCGTTCCTCAGG 3232878 >seq58 Length=10378366 Score = 168 bits (186), Expect = 9e-37 Identities = 297/425 (70%), Gaps = 21/425 (5%) Strand=Plus/Plus Query 42088 CTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTT 42147 ||||||||| ||||| | ||| |||||||| ||||| || ||||| || | | || || Sbjct 1968820 CTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATCAGCCGTCATTTCTT 1968879 Query 42148 AAGCCAAAATATA--GACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAG 42205 ||| || |||||| || ||||| || ||||||||||||||| |||| || |||||| Sbjct 1968880 AAGTCAGAATATATTGATGCAAAAGAACCAGAAAAGAAGATTTCTTCCACATTAGCAAAG 1968939 Query 42206 GCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCC 42265 || | | ||||||| || | ||| | ||||| || || |||| | Sbjct 1968940 GCTACATCATGCTCTCCACAAATAG-ACTTTT---TATCCTGATT----CCAAATCTGTT 1968991 Query 42266 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTA 42325 ||||| || |||||||||||| |||| || |||| |||| | | | |||||| || | Sbjct 1968992 TTCTTCTTCACACAAGGCATCATTTCAGTGCCATTGAAGATAAATTCTTTTTCTTTGGAA 1969051 Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 | |||| |||| | || | | ||| || ||| | ||||| || ||| | ||||| Sbjct 1969052 TTTTTA----ATGTGACAATAAGGAAACTGTATATTACAGAATGTATTTTTCCTATGGCA 1969107 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCG-TTC 42444 || || ||||| |||||||| ||| || |||| || | |||| | |||| | ||| Sbjct 1969108 ATTTGGAATCCATAGAAACAGTGGGCTTCTGTAATTTGAATTTCTTGGCTAAATTGCTTC 1969167 Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 | | || ||||| | | ||| || |||| |||| |||| |||| |||||| ||| Sbjct 1969168 A-CCAATTTTTCATGTATTATGCCATCAC---CTGCTAAAA--GCCAGAACATGTGCTAT 1969221 Query 42505 AAAAT 42509 ||||| Sbjct 1969222 AAAAT 1969226 >seq59 Length=10161055 Score = 161 bits (178), Expect = 1e-34 Identities = 564/875 (64%), Gaps = 19/875 (2%) Strand=Plus/Minus Query 41760 ACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTT 41819 |||| |||||||| | || || || || || | || || ||||||||||| |||| Sbjct 9903270 ACATCACTCCCATCCTCTGATACTCGCCTAC-----TATCAAAGAAATTAGTCTTCCCTT 9903216 Query 41820 CCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATC 41879 | |||| ||| |||| || |||| ||||| || | ||| || ||||| Sbjct 9903215 CTGATGAACCATTCCCCATAAAGACAAATGGATTTTCCACTCTGAAAACCTTCTTAAAGT 9903156 Query 41880 CCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAAT 41939 |||| || || | || ||||| | |||||| || | |||||| ||| | Sbjct 9903155 CCAACTCTAGCATGAGCCTGTCTGCCACGAATTCAATGAACTGCTTCATCCAAGTACAGT 9903096 Query 41940 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 41999 || | || || || || | || | ||| |||| || | || ||||| || ||| | Sbjct 9903095 TCCTCCCAATGAGCTTCATGGGCAAGGCCTCAGTGAGGAGCTCCTGTTCCATCCTGACAG 9903036 Query 42000 CGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 42059 | | || || || ||||| | | || |||| | | | | || ||| Sbjct 9903035 CATTGACGATTATTTATTTTACTCTCTGCTCTGATGGTGTGTGTAGCAGGTATTCGGACA 9902976 Query 42060 TCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACG 42119 || || || || || |||| | |||||| ||||| || || | ||| |||||||| | Sbjct 9902975 TCGGGCA-GCAAATTCAGAGTGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAAATG 9902917 Query 42120 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAA 42179 |||| || ||||| || | || | ||||||||||| || |||||||| ||||||| Sbjct 9902916 TGAGGCCAGGCATCAGTTC-----TTATGAGCCAAAATATTGATGCAAATGAGCCAGAAA 9902862 Query 42180 AGAAGATTCCTTC--TACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACT 42234 |||||||| || | || || || ||| | | || | | || || | | | | Sbjct 9902861 AGAAGATTTCTCCCGTAGTG--GCCAAGACTACAACACGTTTTCTGTAGGTAGCTTCTTT 9902804 Query 42235 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 42294 ||| |||| || || || || ||||| || || ||||||||| |||| || Sbjct 9902803 GTCCCCAGTCCAACACAAGGCACAGTCTGCTTTCTTCTTCACCCAAGGCATCATTTCAAT 9902744 Query 42295 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACT 42354 |||| | ||||| | | | || | || ||||| || | || || | |||| Sbjct 9902743 GGCACTGGAGAGAAATTCCCTGTCTTAGGAATTTTTAATGTAAATGTCAATAAGGAGACC 9902684 Query 42355 ATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414 ||| ||||| ||||| |||||||| || || | || || || ||||||| | ||| || Sbjct 9902683 ATATATTTCAGAATGTATGTTTTCCATAGCAACTTGGAAGCCACAGAAACAGCCGGCTTC 9902624 Query 42415 GGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACT 42474 ||| || || ||| | |||||| | | | |||||| | |||| || |||| Sbjct 9902623 TATAATTTGAACCTCTTGGCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCACG 9902564 Query 42475 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT 42534 ||| |||| || || | |||||| |||||||||| ||| || || | | | Sbjct 9902563 TGCTTCAAAGAAAGCTAGAACATGTGATATAAAATATCATTCCTCAGGCTTCAGGGCCTG 9902504 Query 42535 CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 || | | | || || || | ||| || || || | ||||| || || || || || Sbjct 9902503 CCGGTGCTGACTGTCCTTGGAAAGATCCACCTCCTCCGCTGTCCAGAAGGACGCCTCGGC 9902444 Query 42595 CTTTTTATACATATTCCAGATATCATGAT-ATTGA 42628 || |||||||| | ||| |||||||| | ||||| Sbjct 9902443 TTTCTTATACATTTGCCAAATATCATGGTGATTGA 9902409 >seq64 Length=9676502 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| |||||||| ||||| || ||||| || || || || | Sbjct 6351547 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 6351488 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || ||||||||||||||||| || || || ||||||| Sbjct 6351487 TGAGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGG 6351428 Query 42207 C 42207 | Sbjct 6351427 C 6351427 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 ||||||| || || || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 6349677 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 6349618 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || || || || |||||||| | ||| || ||||| || |||||| | |||||| || Sbjct 6349617 ATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAACTTGAACTTCTTGGCTAAATCGCTC 6349559 >seq30 Length=14751797 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| ||||| || ||||| ||||| || ||||| | Sbjct 820281 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATG 820340 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | || | Sbjct 820341 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 820400 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 820401 CTGTTTCTTACACCAT 820416 Score = 116 bits (128), Expect = 5e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 || |||||||| |||||||| |||||||||||||| | || ||||| |||| || ||| Sbjct 832091 ACCCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCTCGCTGC 832150 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 ||||| |||||||| ||||| || | ||| |||||| | | || || ||||||| ||| Sbjct 832151 TCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGT 832210 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 832211 TCCAGGTAAATAGC 832224 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 |||| || || ||||| || | | | ||||| ||||| || || || | ||||||| Sbjct 825649 CATAGGTTTCATATGGGCCATGCTCCTTTGCTAGGTCACAGCTGGCTTCCAGGGCTCCAT 825708 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||| ||||| || |||| |||||| | || || || || || ||||| |||| Sbjct 825709 AATAAATAGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGAT 825768 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | | || ||||| || ||||| | || ||||| ||||| || ||||| | || | Sbjct 825769 ATCTCATCAGGATAAAAGCATCTGCCAGACCCTGAACCCCAATTCCAATAGGGCGATGGC 825828 Query 71561 TCTTATTAGA 71570 ||||| || Sbjct 825829 GTTTATTTGA 825838 >seq3 Length=41493964 Score = 109 bits (120), Expect = 7e-19 Identities = 151/208 (73%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 39846 TTGTACTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 39905 ||| |||||||| | ||||||||| | || |||| | | || ||||| ||||||| ||| Sbjct 8287232 TTGAACTTCTTCTATATCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCTATTCGATC 8287291 Query 39906 TCCCGTATTTACATTGAAAGTACATTTT-CCATTATTAATAAGAATGACTCCTATGTTTC 39964 || | ||||| || ||| | | ||| ||| ||||| | | || || || |||| Sbjct 8287292 ACCTTTTTTTAC-TTCAAACTTCTCTTTACCAAAATTAAACAACACAACACCAATATTTC 8287350 Query 39965 CCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGAC 40021 | ||||||||||| ||||| ||||| |||||| ||| || |||| | ||| | Sbjct 8287351 CTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTATTTTGCAGCCAGGC 8287410 Query 40022 CAGACCTAGGAGCTATTCTACCATAGCA 40049 |||| | ||||||||||| |||||||| Sbjct 8287411 CAGAACGTGGAGCTATTCTTCCATAGCA 8287438 >seq11673 Length=1157 Score = 86.0 bits (94), Expect = 8e-12 Identities = 109/148 (74%), Gaps = 3/148 (2%) Strand=Plus/Plus Query 41709 TTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TC--TTGAGACATAA 41765 || |||| ||||||||||| |||| || | |||| ||| ||| || | ||||| | Sbjct 211 TTCTGTTCATTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTCGGATTTGACATCA 270 Query 41766 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATG 41825 ||||||| | || || || || || | || || || || |||||||| ||||| | || Sbjct 271 CTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTG 330 Query 41826 ATATATTTTCCATGAAATCAAACGGATT 41853 | ||||| ||||| || ||||| ||||| Sbjct 331 AAATATTCTCCATAAAGTCAAATGGATT 358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671034477117080