Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq536 264 2e-65
seq260 172 7e-38
seq131 172 7e-38
seq58 168 9e-37
seq59 161 1e-34
seq64 120 4e-22
seq30 120 4e-22
seq3 109 7e-19
seq11673 86.0 8e-12
>seq536
Length=337149
Score = 264 bits (292), Expect = 2e-65
Identities = 627/944 (66%), Gaps = 40/944 (4%)
Strand=Plus/Plus
Query 41712 TGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTC 41768
|||| ||||||||||| |||| || | |||| ||| ||| | || ||||| ||||
Sbjct 201724 TGTTCATTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTC 201783
Query 41769 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATA 41828
||||||| || || || || || | || || || || ||||| || ||||| | ||| |
Sbjct 201784 CCATTTTCTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAGTGAAA 201843
Query 41829 TATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAA-TTCA 41887
|||| ||||| || | ||| ||||| || || |||| || ||||| |||| ||||
Sbjct 201844 TATTCTCCATAAAGTTAAATGGATTTTCTACTTTGAAAATCTTGTTAAAGCCCAGCTTCA 201903
Query 41888 GAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCT 41947
| | | | |||||||| | ||||| || || ||||||| |||||||| ||
Sbjct 201904 GCA-TAAGCCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCA 201962
Query 41948 ATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTT 42007
|| || || | || | || | || || || || || || || || || | |
Sbjct 201963 ATTAGCTTCTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGCAT---TG 202019
Query 42008 ATAATAGATC---TTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAA 42064
||||| | | ||||| | | || ||| | | | ||||| | |||||
Sbjct 202020 ATAATTGTTTCTTTTACTCTCTGCTCTGATGGTTTGTGAAGCAGGTGTTTGAGCATCAGG 202079
Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124
|| || || || ||||| | |||||||||||| ||||| | ||| |||||||| |||||
Sbjct 202080 CAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 202139
Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184
|| ||||| || || || || || ||||| |||||||||
Sbjct 202140 CCAGGCATCAGTCCTCGTTTCTTGAGCCA----------------------GAAAAGAAG 202177
Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGT 42241
|||| || | || |||||||| | || | |||||||| | | | ||||
Sbjct 202178 ATTCTGTCCATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCA 202237
Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301
||| | | ||||| ||| ||||| || ||||||||||| ||||| |||||||
Sbjct 202238 ATCAAATGCAAGGCCCAT--GGCTTTCTTCTTCACACAAGGCATTGTTTCAGTGGCATTG 202295
Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361
|||||| | | |||| || ||||||| ||| || || || | |||||||||||||
Sbjct 202296 AAGAGAAATTCCCTTTCTTTGAAGTCTTTAATATAAGTGTCAATAAGAAGACTATACATT 202355
Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421
|| ||||| |||||||| ||||| || || || || ||||||| | ||| || ||||
Sbjct 202356 TCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATT 202415
Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481
|| |||||| | |||| | || | ||||| || || ||||| | |||| || |||
Sbjct 202416 TGAACTTCTTGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCACCTGCCGCA 202475
Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCA 42541
| || |||| | || ||||||||||| ||| || || | | | ||| |
Sbjct 202476 GAGAAAGCCAGAATGTG-GATATAAAATATTGTTCCTCAGGCTTCAGGGCTTCCCAGTGC 202534
Query 42542 TTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTA 42601
| || || | || | | | || || || | |||||||| || || || || || |||
Sbjct 202535 TGAATGTCCCTGGA-AGAGCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTA 202593
Query 42602 TACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645
|||| | || |||| |||| | || || || || || || ||
Sbjct 202594 CACATCTGCCGGATACCATGGTGTTCCATAGGAAAGATGACCAA 202637
>seq260
Length=2306558
Score = 172 bits (190), Expect = 7e-38
Identities = 605/928 (65%), Gaps = 24/928 (3%)
Strand=Plus/Plus
Query 41709 TTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAA 41765
|| |||| |||| |||||| |||| || | ||||| ||| || | || |||||
Sbjct 2179926 TTCTGTTCATTTAGAAGTCAGCATCCAAGGTAAAATAATTCCCTGTTGGATTTGACATCT 2179985
Query 41766 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATG 41825
|||||| | || || ||||| || || || || || ||| |||| |||||| |
Sbjct 2179986 CTCCCACCCTCTGATACTCACCTACTTTCTTCTCAAAGAAGTTAATCTTGTCTTCCATTA 2180045
Query 41826 ATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAA-T 41884
| ||||| ||||| || ||||| | ||| || | ||| || |||| |||| |
Sbjct 2180046 A-ATATTCTCCATAAAGTCAAATGAATTTTCTACTCTGAAAACCTTGCTAAAGCCCAGCT 2180104
Query 41885 TCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATT 41944
||| | | || || | ||| | |||||| ||||| ||||||| || || ||
Sbjct 2180105 TCATCA-TAAACCTGTGTGCCACGAATTCAATATACTGCTTCATCAAAGTGCAGTTTATC 2180163
Query 41945 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 42004
|| | | || || || | |||| | | | || || ||||| | ||| || | |
Sbjct 2180164 CCAGTGAACTTCACAGGCAAAGCCTCCATGATGAACTCCTGTTCTAAGCTGACAGCAT-T 2180222
Query 42005 GTTATAATAGATCTT--ACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAACATC 42061
| || |||| |||| ||| | | || || | | | | | | | ||||| ||||||
Sbjct 2180223 GATA-AATATTTCTTTTACTCTCTGCTCCAATGGTTTG-TGTAGCAGGTGTTTGAACATC 2180280
Query 42062 AAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTG 42121
| || || | || | | | |||||||||||| ||||| | ||| |||||| |
Sbjct 2180281 AGGCAAGCAGAGTCATAAAGTAAACCCTCATCTCTGCTAATAAGTTCACTGGAAAC--TT 2180338
Query 42122 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAG 42181
|| || ||||| | || | || || | | | ||||| || |||| || || | |||
Sbjct 2180339 AGGCCAGGCATCAATCCCTGTTTCTTGAACTAGAATATTGATTCAAAAGAAACATAGAAG 2180398
Query 42182 AAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCA 42238
||| ||||||| || ||| ||||||| | || | |||| || | | | ||||
Sbjct 2180399 AAGTTTCCTTCCACAGCCACAAAGGCTACAACACATTCTCTGTAGGTAGCTTCTTTGTCC 2180458
Query 42239 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 42298
||||| | || ||| || || || |||||| ||||||| ||||| ||||||
Sbjct 2180459 CCAATCCAATGCAAGACCTAATTTGCTTTTTTCTTTACATAAGGCATTGTTTCAATGGCA 2180518
Query 42299 TTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATAC 42358
|| |||||| | | |||| || |||||| || || || || | |||||||||
Sbjct 2180519 TTGAAGAGAAATTCCCTTTCTTTGAAATCTTT----TAAGTGTCAATAAGGAGACTATAC 2180574
Query 42359 ATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTA 42418
||||| |||| | ||||| ||||| || || || | |||||||| | || |||
Sbjct 2180575 ATTTCACAATGTA-GTTTTTCATGGCAATTTGGAAGTCATAGAAACAGTGAACTTCTGTA 2180633
Query 42419 ACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCT 42478
| || ||||| | |||| || | |||||||| || ||||| || ||||| |||
Sbjct 2180634 ATTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTACTATGCCATCACTTGCT 2180693
Query 42479 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCC-A 42537
||||| || || | ||| ||||||||| ||| || | | || | |||| |
Sbjct 2180694 GCAAAGAAATTCATAATATGAGACATAAAATATCATTCCTCAGAT-TTCAGGGCTTCCTA 2180752
Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597
| || || || || ||| | || || | ||| |||| || |||| |||||
Sbjct 2180753 GTGCAGAATGTCCTTGGAAATAGCCACCTCCCCATATGTCAAAAAGGAACCTTCAGCCTT 2180812
Query 42598 TTTATACATATTCCAGATATCATGATAT 42625
||| | || | ||| |||||||| |||
Sbjct 2180813 CTTAGAAATCTGCCAAATATCATGGTAT 2180840
>seq131
Length=5549739
Score = 172 bits (190), Expect = 7e-38
Identities = 265/376 (70%), Gaps = 4/376 (1%)
Strand=Plus/Minus
Query 42150 GCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAA 42209
|||| ||||| ||| |||| || |||||||||||||||||||| | | |||||||| |
Sbjct 3233252 GCCAGAATATTGACACAAAAGAACCAGAAAAGAAGATTCCTTCCGCAGTGGCAAAGGCTA 3233193
Query 42210 TAA---GTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCT 42266
|| || | | || || | ||| ||||| | |||||||| || |
Sbjct 3233192 AAACATGTTCTTGTAGGTAGCCT-CTTTGTTCCCAATCCAACTCAAGGCCCAATCTGCTT 3233134
Query 42267 TCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTAT 42326
|| | || |||||||||||| |||| || ||||| ||||| | | |||| ||| ||
Sbjct 3233133 TCCTCTTCACACAAGGCATCCTTTCAATAGCATTGGAGAGAAATTCCCTTTCTTTAGAAT 3233074
Query 42327 CTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCA 42386
|||||| || || || || | ||||| ||||||| ||||| |||||||| |||| |
Sbjct 3233073 CTTTAATGTAAGTGTCAATAAGGAGACTCTACATTTTAGAATGCATGTTTTCTGTGGCAA 3233014
Query 42387 TCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAG 42446
||| || || |||||||| | | || |||| || |||||| | |||| |||
Sbjct 3233013 CCTGGAAGCCATAGAAACAGCCCACTTCTGTAATTTGAACTTCTTGGCTAAATTATTCCA 3232954
Query 42447 CTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 42506
| |||||||| || |||| || ||||| |||||||| || |||| ||| | |||||
Sbjct 3232953 CCAAATTTTCATTTGCTATGCCATCACTTGCTGCAAAGAAAGCCAGGACAAGCAATATAA 3232894
Query 42507 AATATTTTTCGTCCGG 42522
||||| ||| || ||
Sbjct 3232893 AATATCGTTCCTCAGG 3232878
>seq58
Length=10378366
Score = 168 bits (186), Expect = 9e-37
Identities = 297/425 (70%), Gaps = 21/425 (5%)
Strand=Plus/Plus
Query 42088 CTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTT 42147
||||||||| ||||| | ||| |||||||| ||||| || ||||| || | | || ||
Sbjct 1968820 CTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATCAGCCGTCATTTCTT 1968879
Query 42148 AAGCCAAAATATA--GACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAG 42205
||| || |||||| || ||||| || ||||||||||||||| |||| || ||||||
Sbjct 1968880 AAGTCAGAATATATTGATGCAAAAGAACCAGAAAAGAAGATTTCTTCCACATTAGCAAAG 1968939
Query 42206 GCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCC 42265
|| | | ||||||| || | ||| | ||||| || || |||| |
Sbjct 1968940 GCTACATCATGCTCTCCACAAATAG-ACTTTT---TATCCTGATT----CCAAATCTGTT 1968991
Query 42266 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTA 42325
||||| || |||||||||||| |||| || |||| |||| | | | |||||| || |
Sbjct 1968992 TTCTTCTTCACACAAGGCATCATTTCAGTGCCATTGAAGATAAATTCTTTTTCTTTGGAA 1969051
Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385
| |||| |||| | || | | ||| || ||| | ||||| || ||| | |||||
Sbjct 1969052 TTTTTA----ATGTGACAATAAGGAAACTGTATATTACAGAATGTATTTTTCCTATGGCA 1969107
Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCG-TTC 42444
|| || ||||| |||||||| ||| || |||| || | |||| | |||| | |||
Sbjct 1969108 ATTTGGAATCCATAGAAACAGTGGGCTTCTGTAATTTGAATTTCTTGGCTAAATTGCTTC 1969167
Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504
| | || ||||| | | ||| || |||| |||| |||| |||| |||||| |||
Sbjct 1969168 A-CCAATTTTTCATGTATTATGCCATCAC---CTGCTAAAA--GCCAGAACATGTGCTAT 1969221
Query 42505 AAAAT 42509
|||||
Sbjct 1969222 AAAAT 1969226
>seq59
Length=10161055
Score = 161 bits (178), Expect = 1e-34
Identities = 564/875 (64%), Gaps = 19/875 (2%)
Strand=Plus/Minus
Query 41760 ACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTT 41819
|||| |||||||| | || || || || || | || || ||||||||||| ||||
Sbjct 9903270 ACATCACTCCCATCCTCTGATACTCGCCTAC-----TATCAAAGAAATTAGTCTTCCCTT 9903216
Query 41820 CCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATC 41879
| |||| ||| |||| || |||| ||||| || | ||| || |||||
Sbjct 9903215 CTGATGAACCATTCCCCATAAAGACAAATGGATTTTCCACTCTGAAAACCTTCTTAAAGT 9903156
Query 41880 CCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAAT 41939
|||| || || | || ||||| | |||||| || | |||||| ||| |
Sbjct 9903155 CCAACTCTAGCATGAGCCTGTCTGCCACGAATTCAATGAACTGCTTCATCCAAGTACAGT 9903096
Query 41940 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 41999
|| | || || || || | || | ||| |||| || | || ||||| || ||| |
Sbjct 9903095 TCCTCCCAATGAGCTTCATGGGCAAGGCCTCAGTGAGGAGCTCCTGTTCCATCCTGACAG 9903036
Query 42000 CGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 42059
| | || || || ||||| | | || |||| | | | | || |||
Sbjct 9903035 CATTGACGATTATTTATTTTACTCTCTGCTCTGATGGTGTGTGTAGCAGGTATTCGGACA 9902976
Query 42060 TCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACG 42119
|| || || || || |||| | |||||| ||||| || || | ||| |||||||| |
Sbjct 9902975 TCGGGCA-GCAAATTCAGAGTGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAAATG 9902917
Query 42120 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAA 42179
|||| || ||||| || | || | ||||||||||| || |||||||| |||||||
Sbjct 9902916 TGAGGCCAGGCATCAGTTC-----TTATGAGCCAAAATATTGATGCAAATGAGCCAGAAA 9902862
Query 42180 AGAAGATTCCTTC--TACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACT 42234
|||||||| || | || || || ||| | | || | | || || | | | |
Sbjct 9902861 AGAAGATTTCTCCCGTAGTG--GCCAAGACTACAACACGTTTTCTGTAGGTAGCTTCTTT 9902804
Query 42235 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 42294
||| |||| || || || || ||||| || || ||||||||| |||| ||
Sbjct 9902803 GTCCCCAGTCCAACACAAGGCACAGTCTGCTTTCTTCTTCACCCAAGGCATCATTTCAAT 9902744
Query 42295 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACT 42354
|||| | ||||| | | | || | || ||||| || | || || | ||||
Sbjct 9902743 GGCACTGGAGAGAAATTCCCTGTCTTAGGAATTTTTAATGTAAATGTCAATAAGGAGACC 9902684
Query 42355 ATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414
||| ||||| ||||| |||||||| || || | || || || ||||||| | ||| ||
Sbjct 9902683 ATATATTTCAGAATGTATGTTTTCCATAGCAACTTGGAAGCCACAGAAACAGCCGGCTTC 9902624
Query 42415 GGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACT 42474
||| || || ||| | |||||| | | | |||||| | |||| || ||||
Sbjct 9902623 TATAATTTGAACCTCTTGGCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCACG 9902564
Query 42475 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATT 42534
||| |||| || || | |||||| |||||||||| ||| || || | | |
Sbjct 9902563 TGCTTCAAAGAAAGCTAGAACATGTGATATAAAATATCATTCCTCAGGCTTCAGGGCCTG 9902504
Query 42535 CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594
|| | | | || || || | ||| || || || | ||||| || || || || ||
Sbjct 9902503 CCGGTGCTGACTGTCCTTGGAAAGATCCACCTCCTCCGCTGTCCAGAAGGACGCCTCGGC 9902444
Query 42595 CTTTTTATACATATTCCAGATATCATGAT-ATTGA 42628
|| |||||||| | ||| |||||||| | |||||
Sbjct 9902443 TTTCTTATACATTTGCCAAATATCATGGTGATTGA 9902409
>seq64
Length=9676502
Score = 120 bits (132), Expect = 4e-22
Identities = 99/121 (82%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| ||||| | ||| |||||||| ||||| || ||||| || || || || |
Sbjct 6351547 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 6351488
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| ||||| || ||||| || ||||||||||||||||| || || || |||||||
Sbjct 6351487 TGAGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGG 6351428
Query 42207 C 42207
|
Sbjct 6351427 C 6351427
Score = 93.3 bits (102), Expect = 6e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385
||||||| || || || || | |||||||||||||| ||||| |||||||| |||||
Sbjct 6349677 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 6349618
Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444
|| || || || |||||||| | ||| || ||||| || |||||| | |||||| ||
Sbjct 6349617 ATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAACTTGAACTTCTTGGCTAAATCGCTC 6349559
>seq30
Length=14751797
Score = 120 bits (132), Expect = 4e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202
|| ||||||||||| ||||| ||||| ||||| || ||||| ||||| || ||||| |
Sbjct 820281 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATG 820340
Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262
||||||||||| |||| || ||||||||||| ||||| ||||| || || | | || |
Sbjct 820341 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 820400
Query 71263 CTATTTCTAAGACCAT 71278
|| ||||| | |||||
Sbjct 820401 CTGTTTCTTACACCAT 820416
Score = 116 bits (128), Expect = 5e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
|| |||||||| |||||||| |||||||||||||| | || ||||| |||| || |||
Sbjct 832091 ACCCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCTCGCTGC 832150
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
||||| |||||||| ||||| || | ||| |||||| | | || || ||||||| |||
Sbjct 832151 TCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGT 832210
Query 72142 TCCAAGTATATGGC 72155
|||| ||| || ||
Sbjct 832211 TCCAGGTAAATAGC 832224
Score = 91.5 bits (100), Expect = 2e-13
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440
|||| || || ||||| || | | | ||||| ||||| || || || | |||||||
Sbjct 825649 CATAGGTTTCATATGGGCCATGCTCCTTTGCTAGGTCACAGCTGGCTTCCAGGGCTCCAT 825708
Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500
||||||| ||||| || |||| |||||| | || || || || || ||||| ||||
Sbjct 825709 AATAAATAGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGAT 825768
Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560
| | | || ||||| || ||||| | || ||||| ||||| || ||||| | || |
Sbjct 825769 ATCTCATCAGGATAAAAGCATCTGCCAGACCCTGAACCCCAATTCCAATAGGGCGATGGC 825828
Query 71561 TCTTATTAGA 71570
||||| ||
Sbjct 825829 GTTTATTTGA 825838
>seq3
Length=41493964
Score = 109 bits (120), Expect = 7e-19
Identities = 151/208 (73%), Gaps = 5/208 (2%)
Strand=Plus/Plus
Query 39846 TTGTACTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 39905
||| |||||||| | ||||||||| | || |||| | | || ||||| ||||||| |||
Sbjct 8287232 TTGAACTTCTTCTATATCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCTATTCGATC 8287291
Query 39906 TCCCGTATTTACATTGAAAGTACATTTT-CCATTATTAATAAGAATGACTCCTATGTTTC 39964
|| | ||||| || ||| | | ||| ||| ||||| | | || || || ||||
Sbjct 8287292 ACCTTTTTTTAC-TTCAAACTTCTCTTTACCAAAATTAAACAACACAACACCAATATTTC 8287350
Query 39965 CCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGAC 40021
| ||||||||||| ||||| ||||| |||||| ||| || |||| | ||| |
Sbjct 8287351 CTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTATTTTGCAGCCAGGC 8287410
Query 40022 CAGACCTAGGAGCTATTCTACCATAGCA 40049
|||| | ||||||||||| ||||||||
Sbjct 8287411 CAGAACGTGGAGCTATTCTTCCATAGCA 8287438
>seq11673
Length=1157
Score = 86.0 bits (94), Expect = 8e-12
Identities = 109/148 (74%), Gaps = 3/148 (2%)
Strand=Plus/Plus
Query 41709 TTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TC--TTGAGACATAA 41765
|| |||| ||||||||||| |||| || | |||| ||| ||| || | ||||| |
Sbjct 211 TTCTGTTCATTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTCGGATTTGACATCA 270
Query 41766 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATG 41825
||||||| | || || || || || | || || || || |||||||| ||||| | ||
Sbjct 271 CTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTG 330
Query 41826 ATATATTTTCCATGAAATCAAACGGATT 41853
| ||||| ||||| || ||||| |||||
Sbjct 331 AAATATTCTCCATAAAGTCAAATGGATT 358
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671034477117080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |