Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq14 95.1 1e-14 seq126 89.7 4e-13 >seq14 Length=21378024 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || ||||||| | | ||||| ||||| || ||||| || || || |||||||| | Sbjct 6329957 CCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAG 6329898 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | |||||||||||||| |||||| | || || | ||||||||| || Sbjct 6329897 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGG 6329838 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| |||||| ||| || | ||| || || | ||||| Sbjct 6329837 ATGCCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACC 6329778 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| ||| ||||| || || || | || || ||||| || ||||| Sbjct 6329777 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731 >seq126 Length=5838822 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || ||||||| | | ||||| ||||| || ||||| || || || ||||||| | Sbjct 680964 CCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAG 680905 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | | |||||||||||||| || ||| | || || | ||||||||| || Sbjct 680904 AGAGTGTGGCCATCCTCCAGCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGG 680845 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| |||||| ||| || | ||| || || | ||||| Sbjct 680844 ATGCCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACC 680785 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| ||| ||||| || || || | || || ||||| || ||||| Sbjct 680784 TCGAGGGTGATGGTCTTGCCCGTCATGGTCTTCACAAAGATCTGCAT 680738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414509728319302