Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq536 226 2e-54
seq299 140 3e-28
seq260 122 7e-23
seq2 102 7e-17
seq64 82.4 7e-11
>seq536
Length=337149
Score = 226 bits (250), Expect = 2e-54
Identities = 576/868 (66%), Gaps = 50/868 (6%)
Strand=Plus/Plus
Query 12841 ATTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTT 12900
||| ||||| || |||||| ||||| |||| |||| || ||||| ||||| |||||
Sbjct 201770 ATTCGACATCACTCCCATTTTCTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTT 201829
Query 12901 TCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT-----TCGAACAATAGTAT 12955
||||||| |||||||| |||||||| | || ||||||| | ||| | | |
Sbjct 201830 CCCTTCTAGTGAAATATTCTCCATAAAGTTAAATGGATTTTCTACTTTGAAAA----TCT 201885
Query 12956 TTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATT 13015
| || | ||| ||| || | | || || || ||||| || |||||||| |||||
Sbjct 201886 TGTTAAAGCCCAGCTTC-AGCATAAGCCTATCTGCCACAAATTCAATGTACTGCTTCATC 201944
Query 13016 AAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCT 13075
||| || ||||| || |||| || |||||| |||||||| | || | | |||
Sbjct 201945 AAAGTGCAATTCATCCCAATTAGCTTCTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCT 202004
Query 13076 ATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT--A 13133
|| | | || | ||||| | | ||| ||| | | |||| |||| | ||| |
Sbjct 202005 ATCTTGAAGGCATTGATAATTGTTTCTTTTACTCTCTGCTCTGATGGTT--TGTGAAGCA 202062
Query 13134 GATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCT 13193
| || || | ||||| || ||||| |||||||| || || |||||||| || || || |
Sbjct 202063 GGTGTTTGAGCATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTT 202122
Query 13194 CGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAA 13253
| || |||||||| || || ||||| || |||||||| || | |||
Sbjct 202123 CATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCA-------------- 202168
Query 13254 ACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATAC 13312
||||| || |||| || | || ||||| |||| |||| | ||| |||||
Sbjct 202169 --------GAAAAGAAGATTCTGTCCATAGCAGCAAAGGCTA-CAACACGTTCTCCATAG 202219
Query 13313 GTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTC 13372
||| | ||| | | ||| | | |||||| | ||||| | || || || |
Sbjct 202220 GTAGCCTCTTTGTCCCCAATCAAATGCAAGGCCCA--TGGCTTTCTTCTTCACACAAGGC 202277
Query 13373 ATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCT 13432
|| |||| | || || || | | | | |||| || |||| ||||||||| ||
Sbjct 202278 ATTGTTTCAGTGGCATTGAAGAGAAATTCCCTTTCTTTGAAGTCTTTAATATAAGTGTCA 202337
Query 13433 ATCAATAAG-CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAA 13491
|| || ||| ||||||||||| ||||| || |||||||| || |||||||| ||||| ||
Sbjct 202338 AT-AAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAA 202396
Query 13492 ACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAAC 13551
|| | || |||| | |||||||| | |||| || | || || || || ||
Sbjct 202397 ACTGCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATGGCTCCACCAAATTCTCCTTTAC 202456
Query 13552 TATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC---GTT 13608
||| | |||| || ||| | ||||| || ||||| || |||| || || | |
Sbjct 202457 TATGCTATCACCTGCCGCAGAGAAAGCCAGAATGTGGATATAAAATATTGTTCCTCAGGC 202516
Query 13609 TTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCA 13668
||| | ||| ||| | ||| || | || | | | ||||||||| | |||||
Sbjct 202517 TTC--AGGGCTT--CCCAGTGCTGAATGTCCCTGGA-AGAGCCACCTCCTCAGCTGTCCA 202571
Query 13669 AAAAGAAGCAACAGCCTTCTTATACATC 13696
||| ||||| |||| |||||| |||||
Sbjct 202572 AAAGGAAGCCTCAGCTTTCTTACACATC 202599
>seq299
Length=1791600
Score = 140 bits (154), Expect = 3e-28
Identities = 286/422 (68%), Gaps = 6/422 (1%)
Strand=Plus/Minus
Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922
||||| || |||| |||| ||||| || |||||||| |||||||| ||||| ||||||
Sbjct 1083428 TGATACTCTGAAACTTTTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 1083369
Query 12923 ATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAAT 12982
|||||||| || ||||||| | | | ||| | || | ||| | | |||
Sbjct 1083368 ATAAAATCAAAGGGATTTTCTGCCTGAAAAACCTTTGAGAATCCAAGTTCCATAAGTAAT 1083309
Query 12983 CTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTT 13042
|| ||||| | ||| || || ||||| |||| ||| |||||||||| | || |
Sbjct 1083308 CTTTCAGCTATAAATTCAATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCCA 1083249
Query 13043 ACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCT 13102
|| |||| ||||||||||||| | | || || | || || | | || || ||
Sbjct 1083248 ACTGGCAAGTCTTCTGTTAAAAACTCCTGCTCAATTTTGACAGCATTAACAATGATCTCC 1083189
Query 13103 CTTATTACGTTCTCTAATGGAG---GATTTGATAGATGCTTAAACATCATACATGCAAAA 13159
|| | | || ||| || || |||| || | || ||||| | || |||||
Sbjct 1083188 CTCA--CCCTTTTCTTCTGAAGTCTTATTTACTAAGTACTGAAACACTAGGCAAGCAAAG 1083131
Query 13160 TCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATA 13219
||| || | | | |||||||||| | || ||||| || |||||||| || || || ||
Sbjct 1083130 TCATAGAGAAGTTCTTCATCTCTGTTGATCAGCTCATTGGAAAATGTGAGTCCAGGGATG 1083071
Query 13220 AGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCA 13279
| |||| || || | ||| || |||| |||||| || || | || || ||||||||
Sbjct 1083070 GGACCTCTCTTCTTTAACCAGAAAATAGTAGCAAA-GATCCTCAGAAGAAAATTCCTTCC 1083012
Query 13280 AC 13281
||
Sbjct 1083011 AC 1083010
Score = 96.9 bits (106), Expect = 3e-15
Identities = 208/304 (68%), Gaps = 9/304 (3%)
Strand=Plus/Minus
Query 13187 ATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATA 13246
|| ||||| || |||||||| || || || || | |||| || || | ||| || |||
Sbjct 1082836 ATAAGCTCATTGGAAAATGTAAGTCCAGGGATGGGACCTCTCTTCTTTAACCAGAAAATA 1082777
Query 13247 GCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTG--CTGCAAACGCTATCAACCTTT 13304
|||||||| || || || || || |||||||| || | ||| | || | || ||||
Sbjct 1082776 GCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGAACTG--ATGGCCACCACTCTTT 1082719
Query 13305 CACCATACGTACTATTTTTACTCT-CTATCCACTTTCTGGCCCAGTTTGCTTTTTGT-TT 13362
| ||| | ||| ||| || ||| ||||||| |||||||| |||||||| | ||
Sbjct 1082718 CCCCAAAAGTAGACTTTCTA-TCTACTATCCATCACAGGGCCCAGTCTGCTTTTTTTCTT 1082660
Query 13363 AACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAAT 13422
|||| | ||| ||| ||||| ||||||||| | | || ||| ||| ||
Sbjct 1082659 AACGTATGGCATTGTTTTAATTGCATTAAATAAAAATTCCCCTTTCTTGGAATCTCTGAT 1082600
Query 13423 ATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAA 13482
|||||||||| | || |||| || | ||| |||| ||| | || ||||| ||
Sbjct 1082599 TCAAGTATCTATTAGCAAACTAT--ATCTTTGAGTGAACATTCTTTATGAGAATTTGAAA 1082542
Query 13483 ACCA 13486
||||
Sbjct 1082541 ACCA 1082538
>seq260
Length=2306558
Score = 122 bits (134), Expect = 7e-23
Identities = 391/599 (65%), Gaps = 11/599 (2%)
Strand=Plus/Plus
Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039
|| |||| || || || || || ||||| ||||| ||| ||||| || || | ||
Sbjct 2180113 AACCTGTGTGCCACGAATTCAATATACTGCTTCATCAAAGTGCAGTTTATCCCAGTGAAC 2180172
Query 13040 TTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATG 13099
|| ||||||| ||| || | | || | | ||||| || || | ||||| |||
Sbjct 2180173 TTCACAGGCAAAGCCTCCATGATGAACTCCTGTTCTAAGCTGACAGCATTGATAAATATT 2180232
Query 13100 TCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAA 13159
||| ||| | | ||| ||||| | | || || || ||||||| || ||| |
Sbjct 2180233 TCTTTTACTCTCTGCTCCAATGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAAGCAGAG 2180292
Query 13160 TCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT- 13218
||| | | || || |||||||| || || || || | |||| | ||| || |||||
Sbjct 2180293 TCATAAAGTAAACCCTCATCTCTGCTAATAAGTTCACTGGAAACT--TAGGCCAGGCATC 2180350
Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278
|| |||| |||| || | | | ||||| | |||| ||| | | || || |||||||
Sbjct 2180351 AATCCCT-GTTTCTTGAACTAGAATATTGATTCAAAAGAAACATAGAAGAAGTTTCCTTC 2180409
Query 13279 AACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTTTTACTCTCTATCCACT 13337
|| || |||| |||| |||| | ||| | || ||| | ||| | | ||||| |
Sbjct 2180410 CACAGCCACAAAGGCTA-CAACACATTCTCTGTAGGTAGCTTCTTTGTCCCCAATCCAAT 2180468
Query 13338 TTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAAT 13397
| || | |||||||||| || || | ||| |||| || || || || | |
Sbjct 2180469 GCAAGACCTAATTTGCTTTTTTCTTTACATAAGGCATTGTTTCAATGGCATTGAAGAGAA 2180528
Query 13398 AAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAAT 13457
| | |||| || ||| | ||||| || || | | ||||||||||| |||
Sbjct 2180529 ATTCCCTTTCTTTGAAATCT----TTTAAGTGTCAATAAGGAGACTATACATTTCACAAT 2180584
Query 13458 GAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTT 13517
| | |||| ||| || |||||||| |||| ||||| | | |||| | |||||||
Sbjct 2180585 GTA-GTTTTTCATGGCAATTTGGAAGTCATAGAAACAGTGAACTTCTGTAATTTGAACTT 2180643
Query 13518 CGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaa 13576
| | |||| || | || ||||| || ||||| || ||||| || ||||| |||
Sbjct 2180644 CCTGGCTTAATCACTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAA 2180702
>seq2
Length=46620681
Score = 102 bits (112), Expect = 7e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232
|||||||||| || || || || || |||||||| || || ||||| || |||| || |
Sbjct 41377777 CTTCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCT 41377718
Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292
| | ||| |||||||||||||| || || || || || |||||||| || || ||||| |
Sbjct 41377717 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 41377658
Query 13293 CTATCAACCTTTCACC 13308
| | || ||||| ||
Sbjct 41377657 CCACCACTCTTTCCCC 41377642
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039
||||||||||| |||||||| || ||||||||||| ||| |||||||||| || || |
Sbjct 41384689 AATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACAGTTCATCCCAATGAGG 41384630
Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065
|| |||| ||||||||||||||
Sbjct 41384629 CCAACTGGCAAGGCTTCTGTTAAAAA 41384604
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922
||||| || ||||| ||| ||||| || |||||||| |||||||| ||||| ||||||
Sbjct 41397863 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 41397804
Query 12923 ATAAAATCGAAAGGATTTT 12941
|||||||| || |||||||
Sbjct 41397803 ATAAAATCAAAGGGATTTT 41397785
>seq64
Length=9676502
Score = 82.4 bits (90), Expect = 7e-11
Identities = 81/105 (77%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 13414 GTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGC 13473
|||| ||| ||||| || || | | ||||||||||| ||||| || |||||||| ||
Sbjct 6349678 GTCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 6349619
Query 13474 TATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518
|||||||| ||||| ||||| | || |||| || ||||||||
Sbjct 6349618 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAACTTGAACTTC 6349574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430916831819166
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |