Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq26 179 9e-40 seq455 159 8e-34 seq6 154 3e-32 seq30 150 4e-31 seq536 147 5e-30 seq118 138 3e-27 seq73 136 9e-27 seq3 131 4e-25 seq93 123 6e-23 seq353 109 1e-18 seq279 104 5e-17 seq15 93.3 1e-13 seq11673 89.7 1e-12 >seq26 Length=15501076 Score = 179 bits (198), Expect = 9e-40 Identities = 171/218 (78%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || ||||| || || || || |||||||| || |||||||| ||| | Sbjct 10001825 AGCCTCAGCACCAGATGAAAGGTGGACTCCTTCTGAATGTTGTAGTCAGACTCAGTACGT 10001884 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 | ||||| ||||| || ||||||| ||||| || || |||| |||||| |||||||| Sbjct 10001885 CAATCTTCCAGTTGCTTATCAGCAAAGATTAGTCTTTGATGATTAGGAGGAATTCCTTCC 10001944 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| ||||| || ||||||||||||| ||||| ||||| ||||| | |||| Sbjct 10001945 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATC---TGGTTCAACCTCCATTGTA 10002001 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| | ||||| |||||||| || |||||||| Sbjct 10002002 ATAGTCTTCTCTGTAAGGGTTTTTACGAAAATCTGCAT 10002039 >seq455 Length=570085 Score = 159 bits (176), Expect = 8e-34 Identities = 167/218 (77%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || ||||| | || || || |||| ||| || |||||||| | || | Sbjct 193676 AGCCTCAGAACAAGATGAAGGGTGGACTCCTTCTAAATGTTGTAGTCAGACAAGGTACGT 193617 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||||||||| || |||||||| || || || || ||||||||||| |||||||| Sbjct 193616 CCATCTTCTAGTTGCTTACCAGCAAAGATCAGACTTTGCTGATCAGGAGGAATTCCTTCC 193557 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||| ||| ||||| ||||||| |||||||| ||| |||||| |||| || ||| Sbjct 193556 TTATTCTGGATCTTGGCTTTTATATTTTCTATAGTA----AAGGTTCAACCTTGAGAGTA 193501 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || |||| | ||||| || |||||||| Sbjct 193500 ATAGTCTTCCCCATAAG-GGTTTTATGAAAATCTGCAT 193464 >seq6 Length=30479472 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || | ||||| || || || |||||||| | | |||||| | ||| | Sbjct 3763746 AGCCTCAGCATAAGATGAGGGGTGGACTCCTTCTGAATGCTGTGGTCAGACAAAGTACAT 3763687 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| ||||| || |||||||| || || || || ||||||||||| |||||||| Sbjct 3763686 CCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 3763627 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| ||||| |||||| |||||||| || || ||||| |||| || ||| Sbjct 3763626 TTATCCTGGATCTTGGCTTTTGCATTTTCTGTAGTGTCCGAGGGTTCAGCCTCCAGCGTA 3763567 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | |||||| || ||||| ||||||| || |||||||| Sbjct 3763566 ACAGTCTTCCCTGTAAGGGTTTTTATGAAAATCTGCAT 3763529 >seq30 Length=14751797 Score = 150 bits (166), Expect = 4e-31 Identities = 165/218 (76%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || | ||||| | ||||| || |||||||| || |||||||||| | | | Sbjct 13753786 AGCCTTAGCCCAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGATAAA-TACAC 13753728 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| | ||| || |||||||| ||||| || || |||| ||||| |||| ||| Sbjct 13753727 CCATCTTCCATTTGCTTACCAGCAAAGATTAGTCTTTGCTGATTGGGAGGAATTCTTTCC 13753668 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||| | ||||| |||||||||||||||| ||||| ||||| ||||| || | Sbjct 13753667 TTATCTTAGATCTTGGCTTTTACATTTTCTATAGTATCCAGTGGTTCAACCTCAAGCATG 13753608 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||| |||| ||||| | || |||||||| Sbjct 13753607 ATGGTCTTCCCAATAAGGGTTTTAATGAAAATCTGCAT 13753570 >seq536 Length=337149 Score = 147 bits (162), Expect = 5e-30 Identities = 516/802 (64%), Gaps = 39/802 (5%) Strand=Plus/Minus Query 268841 TTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTA 268900 |||||||| | ||||| || || | ||| | ||||| | || || || || ||| | Sbjct 202500 TTTATATCC-ACATTCTGGCTTTCTCTGCGGCAGGTGATAGCATAGTAAAGGAGAATTTG 202442 Query 268901 GTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAG 268960 || ||| || | ||||| || || ||| | |||||| | |||| || || ||||| Sbjct 202441 GTGGAGCCATTTAGCCAAGAAGTTCAAATTACAGAAGCCCGCAGTTTCTATGGCTTCCAA 202382 Query 268961 ATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGAT 269020 || || || ||||| || ||||| || ||||| ||||| | || || |||||||| | Sbjct 202381 ATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTTCTTATTGACACTTATATTAAA 202322 Query 269021 GATAACAACGAAAAGAAAAGACTATTTTCTTCTA-TGAGAACTATGGACTGTGTGAGaaa 269079 || ||| |||| | || || || | | | ||| ||| ||| ||||||| || Sbjct 202321 GACTTCAAAGAAAGGGAATTTCTCTTCAATGCCACTGA-AACAATGCCTTGTGTGAAGAA 202263 Query 269080 aaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGCGCCT---TACGGAGAAAGGTT 269136 ||| | |||||| || | | ||| || | | | || || |||||| | | Sbjct 202262 GAAAGCC--ATGGGCCTTGCATTTGATTGGGGACAAAGAGGCTACCTATGGAGAACGTGT 202205 Query 269137 AGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTG 269196 || || ||||| ||| | || | || |||||||| || || Sbjct 202204 TGTAGCCTTTGCTGCTATGGACAGAATCTTCTTTTCTGGCTC------------------ 202163 Query 269197 GTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGA 269256 |||||| |||| || ||||| || | || || || || ||| | || ||||| || Sbjct 202162 ----AAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGA 202107 Query 269257 CGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACC 269316 || ||||||||||| ||||| || || | | | | | ||| |||||||| Sbjct 202106 TGAGGGTTTACACTGTGACTTTGCCTGCCTGATGCTCAAACACCTGCTT---CACAAACC 202050 Query 269317 TTCTCAAGATAGAGTATACGAAA---TTATAGATTCAGCTGTTTCTGTAGAAACAGAATT 269373 || | | |||||| | |||| |||| || | || | |||| || || Sbjct 202049 ATCAGAGCAGAGAGTAAAAGAAACAATTATCAATGC--CT-TCAAGATAGATCAGGAGTT 201993 Query 269374 TCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATA 269433 || || ||||| | || | || || || |||||| ||| | ||||| | || Sbjct 201992 CCTCACAGAAGCCTTGCCTGAGAAGCTAATTGGGATGAATTGCACTTTGATGAAGCAGTA 201933 Query 269434 TATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAATATAACGT 269493 ||| | || || | ||||| | || || | || |||| || | | || || Sbjct 201932 CATTGAATTTGTGGCAGATAGGCTTATGCTGAAGCTGGGCTTTAACAAGATTTTCAAAGT 201873 Query 269494 TGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGA 269553 |||||||| |||| |||||||||||||| ||| ||||||| || |||| ||||| || Sbjct 201872 AGAAAATCCATTTAACTTTATGGAGAATATTTCACTAGAAGGGAAAACTAACTTCTTTGA 201813 Query 269554 GAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATTTT 269613 |||| | ||| | | |||||||||||||| || ||||| | | | ||| ||| ||| Sbjct 201812 GAAGGGAGTAGGCGAGTATCAGAAAATGGGAGTGATGTCGAATCCAACAGATAATTCTTT 201753 Query 269614 CACTACAGATGCAGAATTCTAA 269635 || ||||| || || ||| Sbjct 201752 TACCTTGGATGCTGACTTTTAA 201731 >seq118 Length=6029945 Score = 138 bits (152), Expect = 3e-27 Identities = 154/204 (75%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATT---ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTT 104419 || || |||||||| ||||| ||| ||||| ||||| | || ||||| || || || Sbjct 3917706 GTGGACTCTTTCTGGATATTGCAATA-TCAGAAAGAGTGCAGCCATCTTCCAGCTGCTTG 3917764 Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| || ||||||| || |||||||| || ||||||||||||| |||| || Sbjct 3917765 CCTGCAAAGATGAGCCTCTACTGGTCAGGAGGAATGCCTTCTTTATCCTTGTTCTTAGCC 3917824 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || | ||| || || | || | ||| | || |||||||| ||||| || Sbjct 3917825 TTCACATTCTCAATGGTGTCACTGAGCTCCATCTCCAAGGTGATAGTCTTGCCAGTCAGG 3917884 Query 104540 GTTTTTACAAATATCTGCATTTTG 104563 || || ||||| |||||||||||| Sbjct 3917885 GTCTTCACAAAGATCTGCATTTTG 3917908 >seq73 Length=8706776 Score = 136 bits (150), Expect = 9e-27 Identities = 163/218 (75%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || ||||| | || || || |||| ||| || |||||| | || ||| Sbjct 2651759 AGCCTCAGCACAAGATGAAGGGTGGACTCCTTCTCAATGTTGTAGTCAAAGTACGT-CTA 2651701 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| ||||| || ||||||| || | || ||||||||||||| |||||||| Sbjct 2651700 ---TCTTCCAGTTGCTTACCAGCAACGATCAATCTTGGTTGATCAGGAGGAATTCCTTCG 2651644 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| ||||| ||||||| |||||||| || || ||||| || | || || Sbjct 2651643 TTATCCTGGATCTTGGCTTTTATATTTTCTATAGTGTCCGAGGGTTCAACTTTGAG-CTA 2651585 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || ||||| ||||||| || |||||||| Sbjct 2651584 ATAGTCTTCCCCGTAAGGGTTTTTATGAAAATCTGCAT 2651547 >seq3 Length=41493964 Score = 131 bits (144), Expect = 4e-25 Identities = 194/275 (71%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 65729 TTCAAATATGATTTGAGCTACTCTATCGCCTTTACATATATTAAACTCCTCCTTACCGAA 65788 |||| | |||| || |||| || ||| ||||| || | ||||| ||| ||||| || Sbjct 8287265 TTCACAAATGAGCTGTGCTATTCGATCACCTTTTTTTACTTCAAACTTCTCTTTACCAAA 8287324 Query 65789 ATTAAATATTAATATTCCAACATTACCTCTATAGTCTGAATCTATAACACCAGCACCTAC 65848 |||||| | | | |||| ||| |||||||| ||| |||||| |||||||| ||||| Sbjct 8287325 ATTAAACAACACAACACCAATATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTAC 8287384 Query 65849 ATCTATAAAGTAATTATACGCTAATCCAGATCGGGGAGCTATTCTACCATAATATCCTCT 65908 |||||| ||||| || || | ||||| || ||||||||||| ||||| | || Sbjct 8287385 ATCTATGAAGTATTTTGCAGCCAGGCCAGAACGTGGAGCTATTCTTCCATAGCACCCAGA 8287444 Query 65909 AGGAACTGATATAATCAAATCAGTAAATACCAATTCTTTGTCCATGGGTTGTACGGTATA 65968 ||||| | ||| | || || || | |||| ||||| ||| |||| |||| Sbjct 8287445 AGGAAGAGCTATCTGAATGTCTGTTTTCACAAGGGCTTTCTCCATAGGTGGTACTATATA 8287504 Query 65969 ATCGTACGCGCTATATAGATCATATCCTGCAGCCC 66003 ||| || || || || || || || ||||| |||| Sbjct 8287505 ATCATAGGCACTGTACAGGTCGTAGCCTGCGGCCC 8287539 >seq93 Length=7280091 Score = 123 bits (136), Expect = 6e-23 Identities = 108/132 (82%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| ||||| || |||||||| || || ||||| ||||||||||| | |||||| Sbjct 3503789 CCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGG-AATCCTTCC 3503731 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| ||||| || ||||||||||||| | || | |||||| ||||| || ||| Sbjct 3503730 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGGGTC-CGAGGTTCAACCTCGAGCGTA 3503672 Query 104522 ATAGTCTTACCA 104533 |||||||| ||| Sbjct 3503671 ATAGTCTTCCCA 3503660 >seq353 Length=1223491 Score = 109 bits (120), Expect = 1e-18 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 104334 CCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATA 104393 |||||| || | ||| || || || | || || |||||||| ||||| |||||||| | Sbjct 241184 CCCCTC--AGACGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCAGAAA 241241 Query 104394 GAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTA 104453 |||| | || ||||| || || || || ||||| || |||||||| || ||||| || | Sbjct 241242 GAGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAA 241301 Query 104454 TTCCTTCTTTATCCTGAATCTT 104475 | |||||||||||||| ||||| Sbjct 241302 TGCCTTCTTTATCCTGGATCTT 241323 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || |||||||||||||| ||||| || || ||||| || | ||| || || || || ||| Sbjct 241981 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 242040 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || ||||| ||||| || || || ||||| |||||||||||| Sbjct 242041 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTTG 242091 >seq279 Length=2078848 Score = 104 bits (114), Expect = 5e-17 Identities = 123/164 (75%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425 || |||||||| || ||||||||||| ||| | | || ||||| || || || || ||| Sbjct 1038307 GACTCTTTCTGGATGTTATAGTCAGAAAGAATGCAGCCATCTTCCAGCTGCTTGCCTGCA 1038366 Query 104426 AAAATTAGCCTCTGTTGATCAG-GAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTAC 104484 || || |||||||| || |||| | | || ||||| |||||||| ||||| || || | Sbjct 1038367 AAGATGAGCCTCTGCTGGTCAGAGGGAAATACCTTC-TTATCCTGGATCTTGGCCTTCAT 1038425 Query 104485 ATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCT 104528 |||||| | ||| || || || ||||| || || | ||| ||| Sbjct 1038426 ATTTTCAATGGTGTCACTGGGCTCTACTTCCAGGATGATAATCT 1038469 >seq15 Length=20574203 Score = 93.3 bits (102), Expect = 1e-13 Identities = 103/136 (76%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| || |||| ||| | ||| || |||||||||| | ||| Sbjct 16569646 GTGGACTCCTTTTGAATGTTGTAGTGAGACAAAGTGAGACA-TCTTCTAGTTTCCTGCCA 16569588 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| |||||||| || |||| |||||| || |||| | ||||||| |||| | ||| Sbjct 16569587 GCAAAGATTAGCCTTTGCTGATGAGGAGGAATGCCTTTTATATCCTGGGTCTTGACCTTT 16569528 Query 104483 ACATTTTCTACGGTAT 104498 |||||||||| |||| Sbjct 16569527 ACATTTTCTATAGTAT 16569512 >seq11673 Length=1157 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 269489 AACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTC 269548 || || |||||||| ||| |||||||||||||| ||| ||||||| ||| |||| ||| Sbjct 367 AAAGTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTAGAAGGGAAGACTAACTTC 308 Query 269549 TTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTC 269592 || |||||| | ||| | | ||||||| ||||| || ||||| Sbjct 307 TTTGAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTC 264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151214247138964