Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq26 179 9e-40
seq455 159 8e-34
seq6 154 3e-32
seq30 150 4e-31
seq536 147 5e-30
seq118 138 3e-27
seq73 136 9e-27
seq3 131 4e-25
seq93 123 6e-23
seq353 109 1e-18
seq279 104 5e-17
seq15 93.3 1e-13
seq11673 89.7 1e-12
>seq26
Length=15501076
Score = 179 bits (198), Expect = 9e-40
Identities = 171/218 (78%), Gaps = 3/218 (1%)
Strand=Plus/Plus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
||||| || || ||||| || || || || |||||||| || |||||||| ||| |
Sbjct 10001825 AGCCTCAGCACCAGATGAAAGGTGGACTCCTTCTGAATGTTGTAGTCAGACTCAGTACGT 10001884
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
| ||||| ||||| || ||||||| ||||| || || |||| |||||| ||||||||
Sbjct 10001885 CAATCTTCCAGTTGCTTATCAGCAAAGATTAGTCTTTGATGATTAGGAGGAATTCCTTCC 10001944
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
|||||||| ||||| || ||||||||||||| ||||| ||||| ||||| | ||||
Sbjct 10001945 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATC---TGGTTCAACCTCCATTGTA 10002001
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||||||| | ||||| |||||||| || ||||||||
Sbjct 10002002 ATAGTCTTCTCTGTAAGGGTTTTTACGAAAATCTGCAT 10002039
>seq455
Length=570085
Score = 159 bits (176), Expect = 8e-34
Identities = 167/218 (77%), Gaps = 5/218 (2%)
Strand=Plus/Minus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
||||| || || ||||| | || || || |||| ||| || |||||||| | || |
Sbjct 193676 AGCCTCAGAACAAGATGAAGGGTGGACTCCTTCTAAATGTTGTAGTCAGACAAGGTACGT 193617
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| ||||||||||| || |||||||| || || || || ||||||||||| ||||||||
Sbjct 193616 CCATCTTCTAGTTGCTTACCAGCAAAGATCAGACTTTGCTGATCAGGAGGAATTCCTTCC 193557
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
|||| ||| ||||| ||||||| |||||||| ||| |||||| |||| || |||
Sbjct 193556 TTATTCTGGATCTTGGCTTTTATATTTTCTATAGTA----AAGGTTCAACCTTGAGAGTA 193501
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||||||| || |||| | ||||| || ||||||||
Sbjct 193500 ATAGTCTTCCCCATAAG-GGTTTTATGAAAATCTGCAT 193464
>seq6
Length=30479472
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
||||| || | ||||| || || || |||||||| | | |||||| | ||| |
Sbjct 3763746 AGCCTCAGCATAAGATGAGGGGTGGACTCCTTCTGAATGCTGTGGTCAGACAAAGTACAT 3763687
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| ||||| ||||| || |||||||| || || || || ||||||||||| ||||||||
Sbjct 3763686 CCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 3763627
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
|||||||| ||||| |||||| |||||||| || || ||||| |||| || |||
Sbjct 3763626 TTATCCTGGATCTTGGCTTTTGCATTTTCTGTAGTGTCCGAGGGTTCAGCCTCCAGCGTA 3763567
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| |||||| || ||||| ||||||| || ||||||||
Sbjct 3763566 ACAGTCTTCCCTGTAAGGGTTTTTATGAAAATCTGCAT 3763529
>seq30
Length=14751797
Score = 150 bits (166), Expect = 4e-31
Identities = 165/218 (76%), Gaps = 1/218 (0%)
Strand=Plus/Minus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
||||| || | ||||| | ||||| || |||||||| || |||||||||| | | |
Sbjct 13753786 AGCCTTAGCCCAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGATAAA-TACAC 13753728
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| ||||| | ||| || |||||||| ||||| || || |||| ||||| |||| |||
Sbjct 13753727 CCATCTTCCATTTGCTTACCAGCAAAGATTAGTCTTTGCTGATTGGGAGGAATTCTTTCC 13753668
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
||||| | ||||| |||||||||||||||| ||||| ||||| ||||| || |
Sbjct 13753667 TTATCTTAGATCTTGGCTTTTACATTTTCTATAGTATCCAGTGGTTCAACCTCAAGCATG 13753608
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| ||| |||| ||||| | || ||||||||
Sbjct 13753607 ATGGTCTTCCCAATAAGGGTTTTAATGAAAATCTGCAT 13753570
>seq536
Length=337149
Score = 147 bits (162), Expect = 5e-30
Identities = 516/802 (64%), Gaps = 39/802 (5%)
Strand=Plus/Minus
Query 268841 TTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTA 268900
|||||||| | ||||| || || | ||| | ||||| | || || || || ||| |
Sbjct 202500 TTTATATCC-ACATTCTGGCTTTCTCTGCGGCAGGTGATAGCATAGTAAAGGAGAATTTG 202442
Query 268901 GTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAG 268960
|| ||| || | ||||| || || ||| | |||||| | |||| || || |||||
Sbjct 202441 GTGGAGCCATTTAGCCAAGAAGTTCAAATTACAGAAGCCCGCAGTTTCTATGGCTTCCAA 202382
Query 268961 ATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGAT 269020
|| || || ||||| || ||||| || ||||| ||||| | || || |||||||| |
Sbjct 202381 ATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTTCTTATTGACACTTATATTAAA 202322
Query 269021 GATAACAACGAAAAGAAAAGACTATTTTCTTCTA-TGAGAACTATGGACTGTGTGAGaaa 269079
|| ||| |||| | || || || | | | ||| ||| ||| ||||||| ||
Sbjct 202321 GACTTCAAAGAAAGGGAATTTCTCTTCAATGCCACTGA-AACAATGCCTTGTGTGAAGAA 202263
Query 269080 aaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGCGCCT---TACGGAGAAAGGTT 269136
||| | |||||| || | | ||| || | | | || || |||||| | |
Sbjct 202262 GAAAGCC--ATGGGCCTTGCATTTGATTGGGGACAAAGAGGCTACCTATGGAGAACGTGT 202205
Query 269137 AGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTG 269196
|| || ||||| ||| | || | || |||||||| || ||
Sbjct 202204 TGTAGCCTTTGCTGCTATGGACAGAATCTTCTTTTCTGGCTC------------------ 202163
Query 269197 GTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGA 269256
|||||| |||| || ||||| || | || || || || ||| | || ||||| ||
Sbjct 202162 ----AAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGA 202107
Query 269257 CGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACC 269316
|| ||||||||||| ||||| || || | | | | | ||| ||||||||
Sbjct 202106 TGAGGGTTTACACTGTGACTTTGCCTGCCTGATGCTCAAACACCTGCTT---CACAAACC 202050
Query 269317 TTCTCAAGATAGAGTATACGAAA---TTATAGATTCAGCTGTTTCTGTAGAAACAGAATT 269373
|| | | |||||| | |||| |||| || | || | |||| || ||
Sbjct 202049 ATCAGAGCAGAGAGTAAAAGAAACAATTATCAATGC--CT-TCAAGATAGATCAGGAGTT 201993
Query 269374 TCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATA 269433
|| || ||||| | || | || || || |||||| ||| | ||||| | ||
Sbjct 201992 CCTCACAGAAGCCTTGCCTGAGAAGCTAATTGGGATGAATTGCACTTTGATGAAGCAGTA 201933
Query 269434 TATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAATATAACGT 269493
||| | || || | ||||| | || || | || |||| || | | || ||
Sbjct 201932 CATTGAATTTGTGGCAGATAGGCTTATGCTGAAGCTGGGCTTTAACAAGATTTTCAAAGT 201873
Query 269494 TGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGA 269553
|||||||| |||| |||||||||||||| ||| ||||||| || |||| ||||| ||
Sbjct 201872 AGAAAATCCATTTAACTTTATGGAGAATATTTCACTAGAAGGGAAAACTAACTTCTTTGA 201813
Query 269554 GAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATTTT 269613
|||| | ||| | | |||||||||||||| || ||||| | | | ||| ||| |||
Sbjct 201812 GAAGGGAGTAGGCGAGTATCAGAAAATGGGAGTGATGTCGAATCCAACAGATAATTCTTT 201753
Query 269614 CACTACAGATGCAGAATTCTAA 269635
|| ||||| || || |||
Sbjct 201752 TACCTTGGATGCTGACTTTTAA 201731
>seq118
Length=6029945
Score = 138 bits (152), Expect = 3e-27
Identities = 154/204 (75%), Gaps = 4/204 (2%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATT---ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTT 104419
|| || |||||||| ||||| ||| ||||| ||||| | || ||||| || || ||
Sbjct 3917706 GTGGACTCTTTCTGGATATTGCAATA-TCAGAAAGAGTGCAGCCATCTTCCAGCTGCTTG 3917764
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| ||||| || ||||||| || |||||||| || ||||||||||||| |||| ||
Sbjct 3917765 CCTGCAAAGATGAGCCTCTACTGGTCAGGAGGAATGCCTTCTTTATCCTTGTTCTTAGCC 3917824
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| ||||| || | ||| || || | || | ||| | || |||||||| ||||| ||
Sbjct 3917825 TTCACATTCTCAATGGTGTCACTGAGCTCCATCTCCAAGGTGATAGTCTTGCCAGTCAGG 3917884
Query 104540 GTTTTTACAAATATCTGCATTTTG 104563
|| || ||||| ||||||||||||
Sbjct 3917885 GTCTTCACAAAGATCTGCATTTTG 3917908
>seq73
Length=8706776
Score = 136 bits (150), Expect = 9e-27
Identities = 163/218 (75%), Gaps = 5/218 (2%)
Strand=Plus/Minus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
||||| || || ||||| | || || || |||| ||| || |||||| | || |||
Sbjct 2651759 AGCCTCAGCACAAGATGAAGGGTGGACTCCTTCTCAATGTTGTAGTCAAAGTACGT-CTA 2651701
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
||||| ||||| || ||||||| || | || ||||||||||||| ||||||||
Sbjct 2651700 ---TCTTCCAGTTGCTTACCAGCAACGATCAATCTTGGTTGATCAGGAGGAATTCCTTCG 2651644
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
|||||||| ||||| ||||||| |||||||| || || ||||| || | || ||
Sbjct 2651643 TTATCCTGGATCTTGGCTTTTATATTTTCTATAGTGTCCGAGGGTTCAACTTTGAG-CTA 2651585
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||||||| || ||||| ||||||| || ||||||||
Sbjct 2651584 ATAGTCTTCCCCGTAAGGGTTTTTATGAAAATCTGCAT 2651547
>seq3
Length=41493964
Score = 131 bits (144), Expect = 4e-25
Identities = 194/275 (71%), Gaps = 0/275 (0%)
Strand=Plus/Plus
Query 65729 TTCAAATATGATTTGAGCTACTCTATCGCCTTTACATATATTAAACTCCTCCTTACCGAA 65788
|||| | |||| || |||| || ||| ||||| || | ||||| ||| ||||| ||
Sbjct 8287265 TTCACAAATGAGCTGTGCTATTCGATCACCTTTTTTTACTTCAAACTTCTCTTTACCAAA 8287324
Query 65789 ATTAAATATTAATATTCCAACATTACCTCTATAGTCTGAATCTATAACACCAGCACCTAC 65848
|||||| | | | |||| ||| |||||||| ||| |||||| |||||||| |||||
Sbjct 8287325 ATTAAACAACACAACACCAATATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTAC 8287384
Query 65849 ATCTATAAAGTAATTATACGCTAATCCAGATCGGGGAGCTATTCTACCATAATATCCTCT 65908
|||||| ||||| || || | ||||| || ||||||||||| ||||| | ||
Sbjct 8287385 ATCTATGAAGTATTTTGCAGCCAGGCCAGAACGTGGAGCTATTCTTCCATAGCACCCAGA 8287444
Query 65909 AGGAACTGATATAATCAAATCAGTAAATACCAATTCTTTGTCCATGGGTTGTACGGTATA 65968
||||| | ||| | || || || | |||| ||||| ||| |||| ||||
Sbjct 8287445 AGGAAGAGCTATCTGAATGTCTGTTTTCACAAGGGCTTTCTCCATAGGTGGTACTATATA 8287504
Query 65969 ATCGTACGCGCTATATAGATCATATCCTGCAGCCC 66003
||| || || || || || || || ||||| ||||
Sbjct 8287505 ATCATAGGCACTGTACAGGTCGTAGCCTGCGGCCC 8287539
>seq93
Length=7280091
Score = 123 bits (136), Expect = 6e-23
Identities = 108/132 (82%), Gaps = 2/132 (2%)
Strand=Plus/Minus
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| ||||| ||||| || |||||||| || || ||||| ||||||||||| | ||||||
Sbjct 3503789 CCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGG-AATCCTTCC 3503731
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
|||||||| ||||| || ||||||||||||| | || | |||||| ||||| || |||
Sbjct 3503730 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGGGTC-CGAGGTTCAACCTCGAGCGTA 3503672
Query 104522 ATAGTCTTACCA 104533
|||||||| |||
Sbjct 3503671 ATAGTCTTCCCA 3503660
>seq353
Length=1223491
Score = 109 bits (120), Expect = 1e-18
Identities = 110/142 (77%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 104334 CCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATA 104393
|||||| || | ||| || || || | || || |||||||| ||||| |||||||| |
Sbjct 241184 CCCCTC--AGACGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCAGAAA 241241
Query 104394 GAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTA 104453
|||| | || ||||| || || || || ||||| || |||||||| || ||||| || |
Sbjct 241242 GAGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAA 241301
Query 104454 TTCCTTCTTTATCCTGAATCTT 104475
| |||||||||||||| |||||
Sbjct 241302 TGCCTTCTTTATCCTGGATCTT 241323
Score = 96.9 bits (106), Expect = 8e-15
Identities = 88/111 (79%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|| |||||||||||||| ||||| || || ||||| || | ||| || || || || |||
Sbjct 241981 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 242040
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| || || || ||||| ||||| || || || ||||| ||||||||||||
Sbjct 242041 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTTG 242091
>seq279
Length=2078848
Score = 104 bits (114), Expect = 5e-17
Identities = 123/164 (75%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425
|| |||||||| || ||||||||||| ||| | | || ||||| || || || || |||
Sbjct 1038307 GACTCTTTCTGGATGTTATAGTCAGAAAGAATGCAGCCATCTTCCAGCTGCTTGCCTGCA 1038366
Query 104426 AAAATTAGCCTCTGTTGATCAG-GAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTAC 104484
|| || |||||||| || |||| | | || ||||| |||||||| ||||| || || |
Sbjct 1038367 AAGATGAGCCTCTGCTGGTCAGAGGGAAATACCTTC-TTATCCTGGATCTTGGCCTTCAT 1038425
Query 104485 ATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCT 104528
|||||| | ||| || || || ||||| || || | ||| |||
Sbjct 1038426 ATTTTCAATGGTGTCACTGGGCTCTACTTCCAGGATGATAATCT 1038469
>seq15
Length=20574203
Score = 93.3 bits (102), Expect = 1e-13
Identities = 103/136 (76%), Gaps = 1/136 (1%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || || ||||| || |||| ||| | ||| || |||||||||| | |||
Sbjct 16569646 GTGGACTCCTTTTGAATGTTGTAGTGAGACAAAGTGAGACA-TCTTCTAGTTTCCTGCCA 16569588
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| |||||||| || |||| |||||| || |||| | ||||||| |||| | |||
Sbjct 16569587 GCAAAGATTAGCCTTTGCTGATGAGGAGGAATGCCTTTTATATCCTGGGTCTTGACCTTT 16569528
Query 104483 ACATTTTCTACGGTAT 104498
|||||||||| ||||
Sbjct 16569527 ACATTTTCTATAGTAT 16569512
>seq11673
Length=1157
Score = 89.7 bits (98), Expect = 1e-12
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 269489 AACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTC 269548
|| || |||||||| ||| |||||||||||||| ||| ||||||| ||| |||| |||
Sbjct 367 AAAGTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTAGAAGGGAAGACTAACTTC 308
Query 269549 TTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTC 269592
|| |||||| | ||| | | ||||||| ||||| || |||||
Sbjct 307 TTTGAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTC 264
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151214247138964
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