Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq89 114 1e-20 >seq89 Length=7633750 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230 || |||||||| |||| |||||||| ||||| ||||| | ||||| ||||| |||||| Sbjct 5836159 GGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTAGTGGAGGTGATGCCCCAGGCA 5836218 Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACA 127290 || || ||| | || || | || || ||||| || |||||||| || ||||||||||| Sbjct 5836219 GAGAACCACAGCCCAGATGTCAAGGAGCACGTGAACTCCCTGGGGGAGAAGCTGAAGACC 5836278 Query 127291 TTGAGACTTCGACTGCGTCGCTG 127313 | ||||| || || || ||||| Sbjct 5836279 CTCAGACTGCGGCTCCGGCGCTG 5836301 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 127379 AGCTTCAGGAAAGAGGCGTGTACAAGGCCATGAGTGAGTTTGACATATTCATCAACTACA 127438 ||||||| || | |||| | ||||| |||||||||||||||||||| ||||||||||||| Sbjct 5838373 AGCTTCAAGAGAAAGGCATCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 5838432 Query 127439 TCGAGACTTACATG 127452 | || | |||||| Sbjct 5838433 TAGAAGCCTACATG 5838446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429988973001896