Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq73 84.2 3e-11
>seq73
Length=8706776
Score = 84.2 bits (92), Expect = 3e-11
Identities = 142/203 (70%), Gaps = 6/203 (3%)
Strand=Plus/Minus
Query 164502 AGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATT 164561
||| ||||||||| | ||||| ||| | ||| | || || || ||||| ||||| || |
Sbjct 2057465 AGGTTGTAAACATGTTAAAGGCATTCTGTTATACGGGCCCCCAGGTTGTGGTAAGACTCT 2057406
Query 164562 AATGGCTCGATGCATTGCTCAAGCTTTTAAATC---GCGACCCGTTAAAATTGTTAATGG 164618
|||||||| |||| |||| | || ||| | || || ||| | || |||||
Sbjct 2057405 CTTGGCTCGACAGATTGG-CAAGATGTTGAATGCAAGAGAGCCC--AAAGTGGTCAATGG 2057349
Query 164619 TCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCA 164678
|| ||| | | ||||||||||| || || ||||| ||||| || | || | |||
Sbjct 2057348 GCCAGAAATCCTCAACAAATATGTGGGAGAATCAGAGGCTAACATTCGCAAACTTTTTGC 2057289
Query 164679 GGAGGCTGAAGAAGAACAAAAGA 164701
|| |||||||| || |||| ||
Sbjct 2057288 TGATGCTGAAGAGGAGCAAAGGA 2057266
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595779021622800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |