Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq203 86.0 3e-12
seq367 82.4 4e-11
seq127 82.4 4e-11
>seq203
Length=3504862
Score = 86.0 bits (94), Expect = 3e-12
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
|| ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||
Sbjct 2884754 AACTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAAC 2884813
Query 11512 CAACTGAGCTAATGGGCCG 11530
|||||||||||| |||||
Sbjct 2884814 CAACTGAGCTAACCGGCCG 2884832
Score = 86.0 bits (94), Expect = 3e-12
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| || |||||| | |||||||||| ||||||| ||||||||||||| ||
Sbjct 2896106 AAAAAAAGGAACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 2896047
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| |||||||||||||| ||||
Sbjct 2896046 GCTCTAACCAACTGAGCTAACCGGCC 2896021
Score = 84.2 bits (92), Expect = 1e-11
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 2244114 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2244055
Query 11528 CCG 11530
|||
Sbjct 2244054 CCG 2244052
Score = 84.2 bits (92), Expect = 1e-11
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 2837224 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2837283
Query 11528 CCG 11530
|||
Sbjct 2837284 CCG 2837286
Score = 82.4 bits (90), Expect = 4e-11
Identities = 65/79 (82%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
|| ||||||| | ||||| |||| ||||||| ||||||||||||| ||||||| ||
Sbjct 3081456 AACTTGGCCCGTACGGGGATCCAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAAC 3081397
Query 11512 CAACTGAGCTAATGGGCCG 11530
|||||||||||| |||||
Sbjct 3081396 CAACTGAGCTAACCGGCCG 3081378
>seq367
Length=1028980
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 488676 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 488617
Query 11528 CC 11529
||
Sbjct 488616 CC 488615
>seq127
Length=5758938
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1417086 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1417027
Query 11528 CC 11529
||
Sbjct 1417026 CC 1417025
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1456180 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1456239
Query 11528 CC 11529
||
Sbjct 1456240 CC 1456241
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261451417627708
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |