Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_006146.1
Length=171096
Score E
Sequences producing significant alignments: (Bits) Value
seq89 122 1e-22
>seq89
Length=7633750
Score = 122 bits (134), Expect = 1e-22
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199
|||| |||||||| || || ||| |||| || ||||||||||||||||| | ||| || |
Sbjct 5836148 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTAGTGGAGGTGA 5836207
Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259
|||| ||||| || || || ||| | | ||| |||||||||||||| ||||| ||||
Sbjct 5836208 TGCCCCAGGCAGAGAACCACAGCCCAGATGTCAAGGAGCACGTGAACTCCCTGGGGGAGA 5836267
Query 10260 ATCTAAAGACCCTAAGGCTTCG 10281
| || |||||||| || || ||
Sbjct 5836268 AGCTGAAGACCCTCAGACTGCG 5836289
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418
|||| || || ||||| ||||||||||||||||||| |||||||| || || ||||| |
Sbjct 5838373 AGCTTCAAGAGAAAGGCATCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 5838432
Query 10419 TAGAAGCATACATGAC 10434
||||||| ||||||||
Sbjct 5838433 TAGAAGCCTACATGAC 5838448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547293788318080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |