Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq331 232 9e-56 seq13 141 1e-28 seq19 140 5e-28 seq203 95.1 2e-14 >seq331 Length=1449978 Score = 232 bits (256), Expect = 9e-56 Identities = 400/574 (70%), Gaps = 8/574 (1%) Strand=Plus/Plus Query 9330 GCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTCATGAGTAT 9389 |||||| ||||| | || || | || || | |||||||| || || ||| | ||| Sbjct 1418402 GCCAGCAATTTGCCTGGTAAATTACTCAACGAACTGGGTAAGTCCATGTTTCAGTAATAT 1418461 Query 9390 GGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTTTGTTTTATCAATCTCAAACGCA 9447 |||||||||||| | || ||| || ||| |||| | || ||| | ||| | Sbjct 1418462 GGAATTGTTGTATATAAACTGTTGAT--AGTTGTACTCCTGGTCATGAATTTGAAAGGTG 1418519 Query 9448 TCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTTGG 9507 || |||| || | |||||||||||| | |||||||||| ||| | ||| | |||||| Sbjct 1418520 TCAGGCAGAAGGGGATGCCAGTGATAAAGTGTGTTAAACTCAGAAGAAATATGGTTTTGG 1418579 Query 9508 TACTGGAAC-GAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTGGTAGCC 9566 |||||||| | | ||| ||||| || || | |||| || | ||||| ||||| Sbjct 1418580 TACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAGTGATAGCC 1418638 Query 9567 GCTGAGCTGCTGAACATACTGCGTC-ACGATAATGTTGATTGTTTCCCCGATAATGATGA 9625 | | ||||||||||| | | || | | ||| || || || ||||| || | || | Sbjct 1418639 ATTCAAGTGCTGAACATAGT-CTTCAATCACAATTTTAATGGTCTCCCCTATTAATATTA 1418697 Query 9626 GTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACAT 9685 ||| | ||||| |||| || ||| ||| ||||||||||| |||| ||||||| Sbjct 1418698 GTCTGCTTGTCTGGAACAACCACTCATCATCCCACTCTGGATGTTCCTGTTTAAGAACAT 1418757 Query 9686 CGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCA 9745 ||||||||| || |||||| |||||||| || || |||||||| ||||||||||| | Sbjct 1418758 CGCACACTCGATTATGTTCCTGTAGCCAGATTGTTGCATACATCATCAGACCAGGCACTA 1418817 Query 9746 GGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGA 9805 | ||||| ||| || || || || | | | | ||| || || | ||||| |||| Sbjct 1418818 GACCAAAGACCTTCTGCCCCACTGCAAACTGAAGGTGTTCAGGGACGTGAGGAGGGTAGA 1418877 Query 9806 TCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTGAT 9865 |||| | |||||| |||||||| ||| ||||||| || || ||||| | ||||| Sbjct 1418878 TCATCTCCACCTGAGTGTCTTTGACTATGGGAGGATACACCTCTCCATCAATCACCTGAT 1418937 Query 9866 ACTTATCTTTCGCGTCTCTGAAGAGACGCAACTT 9899 | || ||| || ||||||| |||| ||| Sbjct 1418938 ATTTTAGTTTTCTATCCTTGAAGAGGCGCAGCTT 1418971 Score = 109 bits (120), Expect = 8e-19 Identities = 197/287 (69%), Gaps = 1/287 (0%) Strand=Plus/Plus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || ||||| || || ||||| | |||| || ||||| |||| ||| | || | |||| Sbjct 1417969 AAGGGACAGCCCTTCACGTTACGGCAGATGAGGGACTGAATAGAGGCAGTGTTAATGATC 1418028 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 ||| || | ||||| || || ||||| |||||||| || || || || || Sbjct 1418029 TTAAAGCCTTCTTCTCCTCCAAAAGTGCTTGGTTTCCAATAGTGAGGAGAACACATAGGA 1418088 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || ||| || | ||| | ||| || || || |||| || | ||| ||||| ||| Sbjct 1418089 TTACCCAAAAGTC-TTTAAAGGAGAATGGTGCGCCCATTTCCACCATGGTCTCATTAAAG 1418147 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 || || | ||||| ||||||||||||| ||| | | || ||||||| || || ||| Sbjct 1418148 ATAGCATCAGGACGAGGCTTTTCCACCAGGAAGGCAGGATAAAACTCCAAGGCATCAATG 1418207 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 || | || ||||| | || || || |||||||| |||||||| Sbjct 1418208 TCACAATAGAGGGCTTCCAACTCTGCCGCCATTTCCTTCTCTCCTGT 1418254 >seq13 Length=21495731 Score = 141 bits (156), Expect = 1e-28 Identities = 213/303 (70%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 8673 GAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAG 8732 |||| | ||| | | | || ||||| || || ||||| | |||| || ||||| |||| Sbjct 3827903 GAACACTGAATGAGACGAAGGGACAGCCCTTCACGTTACGGCAGATGAGGGACTGAATAG 3827844 Query 8733 TTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAAC 8792 ||| | |||| |||| ||| ||||| ||||| || || ||||| || ||||| || Sbjct 3827843 AGGCAGTGTTGATGATCTTAAAGCCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAATAGT 3827784 Query 8793 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGA 8852 || || || || || ||| || ||||| | ||| || || || |||| || | Sbjct 3827783 GAGGAGAACATATAGGATTACCCAAAAGTCCTTTCAAGGAGAATGGTGCGCCCATTTCCA 3827724 Query 8853 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8912 ||| ||||||| |||||||| | ||||| ||||||||||||| || | | || | Sbjct 3827723 CCATGGTCTCACCAAAGATGGCATCAGGACGAGGCTTTTCCACCAGGAGGGCAGGATAGA 3827664 Query 8913 ACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTC 8972 ||||||| || || ||||| || || || || | || || || |||||||| |||| Sbjct 3827663 ACTCCACGGCATCAATGTCACCATAGAGAGCTTCCAACTCTGCGGCCATTTCCTTCTCTC 3827604 Query 8973 CTG 8975 ||| Sbjct 3827603 CTG 3827601 Score = 136 bits (150), Expect = 6e-27 Identities = 179/247 (72%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 9617 TAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTT 9676 |||| || |||| || ||||| |||| | || ||| ||| ||||||||||| ||| Sbjct 3826194 TAAT-ATTAGTCTGGTCGTCTGGAACAACCGCTCATCATCCCACTCTGGATGTTCCTGTT 3826136 Query 9677 TCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGAC 9736 | || |||||||| |||| || ||||||| ||||| || || || |||||||| |||| Sbjct 3826135 TAAGCACATCGCATACTCGATTATGTTCCCGTAGCCAAATTGTGGCATACATCATCAGAC 3826076 Query 9737 CAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGG 9796 ||||||| || ||||| |||| || || ||||| | | | | ||| || || | | Sbjct 3826075 CAGGCACTAGACCAAAGACCTCCTGCCCCACAGCAAACTGAAGGTGTTCAGGGACATGAG 3826016 Query 9797 GAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAA 9856 | || |||| ||| | ||| || |||||||| | ||| ||||||| || || |||| Sbjct 3826015 GGGGGTAGAGCATCTCCACTTGAGTGTCTTTGACTGTGGGAGGATACACCTCTCCATCAA 3825956 Query 9857 TAATCTG 9863 | | ||| Sbjct 3825955 TCACCTG 3825949 Score = 93.3 bits (102), Expect = 6e-14 Identities = 183/266 (69%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| |||||| | |||| || || || | |||||||| || || | Sbjct 3826777 CTTACCCTGCCAGCAATTTGTCTGCTGAATGACTCAACAAACTGGGTAAGTCCATGTTCC 3826718 Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTTTGTTTTATCAATCT 9439 | | ||||| |||||||| | || ||| || ||| |||| | || ||| | Sbjct 3826717 AGTAAAATGGAGTTGTTGTAGATAAACTGTTGAT--AGTTGTACTCCTGGTCATGAATTT 3826660 Query 9440 CAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9499 ||| | || |||| || | |||||||||||| | |||||||||| ||| |||| Sbjct 3826659 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAAAGTGTGTTAAACTCAGAAGCAATAC 3826600 Query 9500 GATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAG 9558 | |||||||||||||| | | ||| ||||| || || | |||| || | ||| Sbjct 3826599 GGTTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAG 3826541 Query 9559 TGGTAGCCGCTGAGCTGCTGAACATA 9584 || ||||| || | ||||| ||||| Sbjct 3826540 TGATAGCCACTCAAGTGCTGGACATA 3826515 >seq19 Length=19581918 Score = 140 bits (154), Expect = 5e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || || || || || ||||| ||||||||||||||||| | || ||||||||| ||| Sbjct 10757958 AAGCCTACCTCGCCACCGAATGTGCTGGGTTTCCAGTACTCTGGAGAGCAGATGGGGTTT 10757899 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 ||| || || || |||||||| |||||||| | ||| | |||||||| || || ||| Sbjct 10757898 CCCAGAAGACCCTTAAGGGAAAAGGGAGCCCCAATCTCTATCATGCTCTCCCCAAAAATG 10757839 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||| ||| || |||||| | || | || | ||| || |||| ||| ||||||||| Sbjct 10757838 GAGTTCGGAAGGCACTTTTCAAGCAGCAGCCCCGGGTAGAATTCCAAAGCATCGATGTCT 10757779 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 ||||| || || | || || || || ||||| |||||| Sbjct 10757778 CCGTACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCT 10757737 >seq203 Length=3504862 Score = 95.1 bits (104), Expect = 2e-14 Identities = 209/309 (68%), Gaps = 7/309 (2%) Strand=Plus/Plus Query 8673 GAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAG 8732 |||| | ||| | | | || ||||| || || ||||| | |||| || ||||| || | Sbjct 2598888 GAACACTGAATGAGACGAAGGGACAGCCCTTCACGTTACGGCAGATGAGGGACTGAATCG 2598947 Query 8733 TTGCACTCTTGACGATCCCAAACCCCACGT----CTCCGCCGAAGGTGCTGGGTTTCCAG 8788 ||| | |||| | || ||| | || |||| || || ||||| || ||||| Sbjct 2598948 AGGCAGTGTTGATGTTCTTAAAGGAGAAGTGGTTCTCCTCCAAAAGTGCTTGGCTTCCAA 2599007 Query 8789 TAACCCGGGGAGCAGATGACGTTCGCC-ATGAGGCCTTTGAGGGAAAACGGAGCCCCCAG 8847 || || || || || | | || || | || ||||| ||||| || || | |||| Sbjct 2599008 TAGTGAGGAGATCATAT-AGGATCACCCAAAAGTCCTTTCAGGGAGAATGGTGATCCCAT 2599066 Query 8848 CTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGT 8907 || | ||| ||||||| ||||||| || ||||| ||||||||||||| || | | Sbjct 2599067 TTCCACCATGGTCTCACCAAAGATGG-GTCAGGACGAGGCTTTTCCACCAGGAGGGCAGG 2599125 Query 8908 GTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTT 8967 || ||||||| || || |||| || || ||||| | || || || |||| ||| Sbjct 2599126 ATAGAACTCCATGGCATCAATGTTACCTTAGAGGGCTTCCAACTCTGCGGCCATTTTCTT 2599185 Query 8968 TTCTCCTGT 8976 |||||||| Sbjct 2599186 CTCTCCTGT 2599194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708414243561520