Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq331 232 9e-56
seq13 141 1e-28
seq19 140 5e-28
seq203 95.1 2e-14
>seq331
Length=1449978
Score = 232 bits (256), Expect = 9e-56
Identities = 400/574 (70%), Gaps = 8/574 (1%)
Strand=Plus/Plus
Query 9330 GCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTCATGAGTAT 9389
|||||| ||||| | || || | || || | |||||||| || || ||| | |||
Sbjct 1418402 GCCAGCAATTTGCCTGGTAAATTACTCAACGAACTGGGTAAGTCCATGTTTCAGTAATAT 1418461
Query 9390 GGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTTTGTTTTATCAATCTCAAACGCA 9447
|||||||||||| | || ||| || ||| |||| | || ||| | ||| |
Sbjct 1418462 GGAATTGTTGTATATAAACTGTTGAT--AGTTGTACTCCTGGTCATGAATTTGAAAGGTG 1418519
Query 9448 TCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTTGG 9507
|| |||| || | |||||||||||| | |||||||||| ||| | ||| | ||||||
Sbjct 1418520 TCAGGCAGAAGGGGATGCCAGTGATAAAGTGTGTTAAACTCAGAAGAAATATGGTTTTGG 1418579
Query 9508 TACTGGAAC-GAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTGGTAGCC 9566
|||||||| | | ||| ||||| || || | |||| || | ||||| |||||
Sbjct 1418580 TACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAGTGATAGCC 1418638
Query 9567 GCTGAGCTGCTGAACATACTGCGTC-ACGATAATGTTGATTGTTTCCCCGATAATGATGA 9625
| | ||||||||||| | | || | | ||| || || || ||||| || | || |
Sbjct 1418639 ATTCAAGTGCTGAACATAGT-CTTCAATCACAATTTTAATGGTCTCCCCTATTAATATTA 1418697
Query 9626 GTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACAT 9685
||| | ||||| |||| || ||| ||| ||||||||||| |||| |||||||
Sbjct 1418698 GTCTGCTTGTCTGGAACAACCACTCATCATCCCACTCTGGATGTTCCTGTTTAAGAACAT 1418757
Query 9686 CGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCA 9745
||||||||| || |||||| |||||||| || || |||||||| ||||||||||| |
Sbjct 1418758 CGCACACTCGATTATGTTCCTGTAGCCAGATTGTTGCATACATCATCAGACCAGGCACTA 1418817
Query 9746 GGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGA 9805
| ||||| ||| || || || || | | | | ||| || || | ||||| ||||
Sbjct 1418818 GACCAAAGACCTTCTGCCCCACTGCAAACTGAAGGTGTTCAGGGACGTGAGGAGGGTAGA 1418877
Query 9806 TCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTGAT 9865
|||| | |||||| |||||||| ||| ||||||| || || ||||| | |||||
Sbjct 1418878 TCATCTCCACCTGAGTGTCTTTGACTATGGGAGGATACACCTCTCCATCAATCACCTGAT 1418937
Query 9866 ACTTATCTTTCGCGTCTCTGAAGAGACGCAACTT 9899
| || ||| || ||||||| |||| |||
Sbjct 1418938 ATTTTAGTTTTCTATCCTTGAAGAGGCGCAGCTT 1418971
Score = 109 bits (120), Expect = 8e-19
Identities = 197/287 (69%), Gaps = 1/287 (0%)
Strand=Plus/Plus
Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749
|| ||||| || || ||||| | |||| || ||||| |||| ||| | || | ||||
Sbjct 1417969 AAGGGACAGCCCTTCACGTTACGGCAGATGAGGGACTGAATAGAGGCAGTGTTAATGATC 1418028
Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809
||| || | ||||| || || ||||| |||||||| || || || || ||
Sbjct 1418029 TTAAAGCCTTCTTCTCCTCCAAAAGTGCTTGGTTTCCAATAGTGAGGAGAACACATAGGA 1418088
Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869
|| ||| || | ||| | ||| || || || |||| || | ||| ||||| |||
Sbjct 1418089 TTACCCAAAAGTC-TTTAAAGGAGAATGGTGCGCCCATTTCCACCATGGTCTCATTAAAG 1418147
Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929
|| || | ||||| ||||||||||||| ||| | | || ||||||| || || |||
Sbjct 1418148 ATAGCATCAGGACGAGGCTTTTCCACCAGGAAGGCAGGATAAAACTCCAAGGCATCAATG 1418207
Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976
|| | || ||||| | || || || |||||||| ||||||||
Sbjct 1418208 TCACAATAGAGGGCTTCCAACTCTGCCGCCATTTCCTTCTCTCCTGT 1418254
>seq13
Length=21495731
Score = 141 bits (156), Expect = 1e-28
Identities = 213/303 (70%), Gaps = 0/303 (0%)
Strand=Plus/Minus
Query 8673 GAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAG 8732
|||| | ||| | | | || ||||| || || ||||| | |||| || ||||| ||||
Sbjct 3827903 GAACACTGAATGAGACGAAGGGACAGCCCTTCACGTTACGGCAGATGAGGGACTGAATAG 3827844
Query 8733 TTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAAC 8792
||| | |||| |||| ||| ||||| ||||| || || ||||| || ||||| ||
Sbjct 3827843 AGGCAGTGTTGATGATCTTAAAGCCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAATAGT 3827784
Query 8793 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGA 8852
|| || || || || ||| || ||||| | ||| || || || |||| || |
Sbjct 3827783 GAGGAGAACATATAGGATTACCCAAAAGTCCTTTCAAGGAGAATGGTGCGCCCATTTCCA 3827724
Query 8853 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8912
||| ||||||| |||||||| | ||||| ||||||||||||| || | | || |
Sbjct 3827723 CCATGGTCTCACCAAAGATGGCATCAGGACGAGGCTTTTCCACCAGGAGGGCAGGATAGA 3827664
Query 8913 ACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTC 8972
||||||| || || ||||| || || || || | || || || |||||||| ||||
Sbjct 3827663 ACTCCACGGCATCAATGTCACCATAGAGAGCTTCCAACTCTGCGGCCATTTCCTTCTCTC 3827604
Query 8973 CTG 8975
|||
Sbjct 3827603 CTG 3827601
Score = 136 bits (150), Expect = 6e-27
Identities = 179/247 (72%), Gaps = 1/247 (0%)
Strand=Plus/Minus
Query 9617 TAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTT 9676
|||| || |||| || ||||| |||| | || ||| ||| ||||||||||| |||
Sbjct 3826194 TAAT-ATTAGTCTGGTCGTCTGGAACAACCGCTCATCATCCCACTCTGGATGTTCCTGTT 3826136
Query 9677 TCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGAC 9736
| || |||||||| |||| || ||||||| ||||| || || || |||||||| ||||
Sbjct 3826135 TAAGCACATCGCATACTCGATTATGTTCCCGTAGCCAAATTGTGGCATACATCATCAGAC 3826076
Query 9737 CAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGG 9796
||||||| || ||||| |||| || || ||||| | | | | ||| || || | |
Sbjct 3826075 CAGGCACTAGACCAAAGACCTCCTGCCCCACAGCAAACTGAAGGTGTTCAGGGACATGAG 3826016
Query 9797 GAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAA 9856
| || |||| ||| | ||| || |||||||| | ||| ||||||| || || ||||
Sbjct 3826015 GGGGGTAGAGCATCTCCACTTGAGTGTCTTTGACTGTGGGAGGATACACCTCTCCATCAA 3825956
Query 9857 TAATCTG 9863
| | |||
Sbjct 3825955 TCACCTG 3825949
Score = 93.3 bits (102), Expect = 6e-14
Identities = 183/266 (69%), Gaps = 6/266 (2%)
Strand=Plus/Minus
Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381
||||| | |||||| |||||| | |||| || || || | |||||||| || || |
Sbjct 3826777 CTTACCCTGCCAGCAATTTGTCTGCTGAATGACTCAACAAACTGGGTAAGTCCATGTTCC 3826718
Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTTTGTTTTATCAATCT 9439
| | ||||| |||||||| | || ||| || ||| |||| | || ||| |
Sbjct 3826717 AGTAAAATGGAGTTGTTGTAGATAAACTGTTGAT--AGTTGTACTCCTGGTCATGAATTT 3826660
Query 9440 CAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9499
||| | || |||| || | |||||||||||| | |||||||||| ||| ||||
Sbjct 3826659 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAAAGTGTGTTAAACTCAGAAGCAATAC 3826600
Query 9500 GATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAG 9558
| |||||||||||||| | | ||| ||||| || || | |||| || | |||
Sbjct 3826599 GGTTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAG 3826541
Query 9559 TGGTAGCCGCTGAGCTGCTGAACATA 9584
|| ||||| || | ||||| |||||
Sbjct 3826540 TGATAGCCACTCAAGTGCTGGACATA 3826515
>seq19
Length=19581918
Score = 140 bits (154), Expect = 5e-28
Identities = 164/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812
|| || || || || ||||| ||||||||||||||||| | || ||||||||| |||
Sbjct 10757958 AAGCCTACCTCGCCACCGAATGTGCTGGGTTTCCAGTACTCTGGAGAGCAGATGGGGTTT 10757899
Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872
||| || || || |||||||| |||||||| | ||| | |||||||| || || |||
Sbjct 10757898 CCCAGAAGACCCTTAAGGGAAAAGGGAGCCCCAATCTCTATCATGCTCTCCCCAAAAATG 10757839
Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932
| ||| ||| || |||||| | || | || | ||| || |||| ||| |||||||||
Sbjct 10757838 GAGTTCGGAAGGCACTTTTCAAGCAGCAGCCCCGGGTAGAATTCCAAAGCATCGATGTCT 10757779
Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974
||||| || || | || || || || ||||| ||||||
Sbjct 10757778 CCGTACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCT 10757737
>seq203
Length=3504862
Score = 95.1 bits (104), Expect = 2e-14
Identities = 209/309 (68%), Gaps = 7/309 (2%)
Strand=Plus/Plus
Query 8673 GAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAG 8732
|||| | ||| | | | || ||||| || || ||||| | |||| || ||||| || |
Sbjct 2598888 GAACACTGAATGAGACGAAGGGACAGCCCTTCACGTTACGGCAGATGAGGGACTGAATCG 2598947
Query 8733 TTGCACTCTTGACGATCCCAAACCCCACGT----CTCCGCCGAAGGTGCTGGGTTTCCAG 8788
||| | |||| | || ||| | || |||| || || ||||| || |||||
Sbjct 2598948 AGGCAGTGTTGATGTTCTTAAAGGAGAAGTGGTTCTCCTCCAAAAGTGCTTGGCTTCCAA 2599007
Query 8789 TAACCCGGGGAGCAGATGACGTTCGCC-ATGAGGCCTTTGAGGGAAAACGGAGCCCCCAG 8847
|| || || || || | | || || | || ||||| ||||| || || | ||||
Sbjct 2599008 TAGTGAGGAGATCATAT-AGGATCACCCAAAAGTCCTTTCAGGGAGAATGGTGATCCCAT 2599066
Query 8848 CTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGT 8907
|| | ||| ||||||| ||||||| || ||||| ||||||||||||| || | |
Sbjct 2599067 TTCCACCATGGTCTCACCAAAGATGG-GTCAGGACGAGGCTTTTCCACCAGGAGGGCAGG 2599125
Query 8908 GTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTT 8967
|| ||||||| || || |||| || || ||||| | || || || |||| |||
Sbjct 2599126 ATAGAACTCCATGGCATCAATGTTACCTTAGAGGGCTTCCAACTCTGCGGCCATTTTCTT 2599185
Query 8968 TTCTCCTGT 8976
||||||||
Sbjct 2599186 CTCTCCTGT 2599194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708414243561520
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