Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq126 116 3e-21
seq14 116 3e-21
seq13 93.3 4e-14
>seq126
Length=5838822
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| |||| || || | ||||||||||| || || || || || | | | |||||
Sbjct 680964 CCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAG 680905
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||||| | ||||||||||||||| || |||| |||| | |||||||| || ||
Sbjct 680904 AGAGTGTGGCCATCCTCCAGCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGG 680845
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || || ||||| | |||||| || ||||| ||| |||||| | | || ||
Sbjct 680844 ATGCCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACC 680785
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || || || | || |||||||||||||||||
Sbjct 680784 TCGAGGGTGATGGTCTTGCCCGTCATGGTCTTCACAAAGATCTGCAT 680738
>seq14
Length=21378024
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| |||| || || | ||||||||||| || || || || || | ||| |||||
Sbjct 6329957 CCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAG 6329898
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| |||| | ||||||||||||||| || |||| || | | |||||||| || ||
Sbjct 6329897 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGG 6329838
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || || ||||| | |||||| || ||||| ||| |||||| | | || ||
Sbjct 6329837 ATGCCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACC 6329778
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || || || || || |||||||||||||||||
Sbjct 6329777 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731
>seq13
Length=21495731
Score = 93.3 bits (102), Expect = 4e-14
Identities = 155/224 (69%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 94784 CCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATA 94843
||||||| | | |||||||| | ||| || || || || | ||| ||||| | |
Sbjct 9191925 CCTCTCAGGCAAAGCACCAAGTATAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGA 9191866
Query 94844 GTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATA 94903
||| | |||||| |||||||| || |||| || | |||||||| || || ||
Sbjct 9191865 GTGCGGTCATCCTCTAGCTGTTTACCTGCAAATATCAGATGCTGCTGATCAGGTGGGATG 9191806
Query 94904 CCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCA 94963
|| || | ||| | || |||||| ||||| ||| |||||| | | ||||| ||
Sbjct 9191805 CCCTCCTGGTCTTGAAATTTTGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCG 9191746
Query 94964 ATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| |||||||| || || | || || |||||||||||||| ||
Sbjct 9191745 AGGGTGATGGTCTTGCCTATCAGGGTCTTCACAAAGATCTGAAT 9191702
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448221249761880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |