Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq203 143 4e-30
seq119 136 6e-28
seq112 123 4e-24
>seq203
Length=3504862
Score = 143 bits (158), Expect = 4e-30
Identities = 198/277 (71%), Gaps = 0/277 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| | || || || |||||||| || ||||||||||| || ||
Sbjct 2055264 CGCCAAGCGCCACCGCAAAGTCCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 2055323
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || ||||| || |||||||| |||| || | |||| || ||||
Sbjct 2055324 CCGCCGCCTGGCCCGCCGTGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 2055383
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 2055384 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 2055443
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | |||||||| | || || || ||
Sbjct 2055444 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTATGCGCTCAAGCGCCAGGG 2055503
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAAT 16708
||| | | || || || || ||||| ||| ||||
Sbjct 2055504 CCGCACTCTCTACGGCTTCGGTGGTTAAGCTTTTAAT 2055540
Score = 127 bits (140), Expect = 3e-25
Identities = 174/243 (72%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 2080753 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 2080694
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || ||||| || |||||||| |||| || | |||| || ||||
Sbjct 2080693 CCGCCGCCTGGCCCGCCGTGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 2080634
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 2080633 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 2080574
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 2080573 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 2080514
Query 16672 CCG 16674
|||
Sbjct 2080513 CCG 2080511
Score = 127 bits (140), Expect = 3e-25
Identities = 174/243 (72%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 3139901 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 3139960
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || ||||| || |||||||| |||| || | |||| || ||||
Sbjct 3139961 CCGCCGCCTGGCCCGCCGTGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 3140020
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 3140021 CCGAGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 3140080
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 3140081 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 3140140
Query 16672 CCG 16674
|||
Sbjct 3140141 CCG 3140143
Score = 127 bits (140), Expect = 3e-25
Identities = 174/243 (72%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 3168382 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 3168323
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || ||||| || |||||||| |||| || | |||| || ||||
Sbjct 3168322 CCGCCGCCTGGCCCGCCGTGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 3168263
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 3168262 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 3168203
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 3168202 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 3168143
Query 16672 CCG 16674
|||
Sbjct 3168142 CCG 3168140
Score = 123 bits (136), Expect = 4e-24
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 1953124 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1953183
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 1953184 CCGCCGCCTGGCCCGCCGGGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 1953243
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 1953244 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 1953303
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 1953304 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 1953363
Query 16672 CCG 16674
|||
Sbjct 1953364 CCG 1953366
Score = 123 bits (136), Expect = 4e-24
Identities = 184/261 (70%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 2019341 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 2019282
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 2019281 CCGCCGCCTGGCCCGCCGGGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 2019222
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 2019221 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 2019162
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 2019161 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 2019102
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | | || || |||||
Sbjct 2019101 CCGCACCCTCTACGGCTTTGG 2019081
Score = 123 bits (136), Expect = 4e-24
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 2037740 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 2037799
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 2037800 CCGCCGCCTGGCCCGCCGGGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 2037859
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 2037860 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 2037919
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 2037920 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 2037979
Query 16672 CCG 16674
|||
Sbjct 2037980 CCG 2037982
Score = 123 bits (136), Expect = 4e-24
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 2803855 CGCCAAGCGCCACCGCAAGGTGCTGCGGGACAACATCCAGGGCATCACCAAGCCCGCCAT 2803914
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 2803915 CCGCCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 2803974
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 2803975 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 2804034
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 2804035 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 2804094
Query 16672 CCG 16674
|||
Sbjct 2804095 CCG 2804097
Score = 118 bits (130), Expect = 2e-22
Identities = 172/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 1881752 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1881811
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || || ||||| |||| || | |||| || ||||
Sbjct 1881812 CCGCCGCCTGGCCCGCCGGGGCGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 1881871
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 1881872 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 1881931
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 1881932 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 1881991
Query 16672 CCG 16674
|||
Sbjct 1881992 CCG 1881994
Score = 118 bits (130), Expect = 2e-22
Identities = 172/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 1888562 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1888503
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || || ||||| |||| || | |||| || ||||
Sbjct 1888502 CCGCCGCCTGGCCCGCCGGGGCGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 1888443
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 1888442 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 1888383
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 1888382 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 1888323
Query 16672 CCG 16674
|||
Sbjct 1888322 CCG 1888320
>seq119
Length=5986668
Score = 136 bits (150), Expect = 6e-28
Identities = 189/262 (72%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || || | | |||| ||||||||||||||||| || || ||||||||||
Sbjct 2702141 CGCCAAGCGCCACCGGA-AGGTCTTACGAGATAACATCCAAGGCATTACGAAGCCAGCTA 2702199
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
| || || ||||| |||||||| || |||||||| ||||||| || | || |||||||
Sbjct 2702200 TTCGCCGCCTGGCCCGTCGTGGGGGCGTCAAGCGCATCTCTGGGCTGATATACGAAGAGA 2702259
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | ||| | || | || | ||| ||| || | ||||| | || || |
Sbjct 2702260 CCCGAGGAGTTCTCAAAGTTTTTTTGGAGAACGTGATTCGCGATGCGGTGACTTACACGG 2702319
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
|||| || ||||| ||||| || || ||||||| | ||||| || ||||||| || |
Sbjct 2702320 AGCATGCCAAACGCAAGACAGTGACAGCCATGGACGTGGTCTACGCTCTGAAACGCCAGG 2702379
Query 16671 GCCGTAAGATTTATGGTTTTGG 16692
|||| | | || || |||||
Sbjct 2702380 GCCGCACTCTGTACGGCTTTGG 2702401
>seq112
Length=6271480
Score = 123 bits (136), Expect = 4e-24
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 173790 CGCCAAGCGCCACCGCAAGGTGCTGCGGGACAACATCCAGGGCATCACCAAGCCCGCCAT 173849
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 173850 CCGCCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 173909
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| |||| || || || ||| || ||
Sbjct 173910 CCGCGGCGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 173969
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 173970 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 174029
Query 16672 CCG 16674
|||
Sbjct 174030 CCG 174032
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79063786705719
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