Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq536 161 1e-34
seq299 116 4e-21
seq11673 96.9 4e-15
seq131 86.0 7e-12
seq2 86.0 7e-12
>seq536
Length=337149
Score = 161 bits (178), Expect = 1e-34
Identities = 520/811 (64%), Gaps = 29/811 (4%)
Strand=Plus/Plus
Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181
|| |||||||| |||||||| || | ||| ||||||| | || ||||| | ||||
Sbjct 201726 TTCATTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTCCC 201785
Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241
||||| ||||| || | |||| || || || || || || || ||||| | ||| |||
Sbjct 201786 ATTTTCTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAGTGAAATA 201845
Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301
|||||||| | |||||||||||| ||| || || || ||| | ||||| | | |
Sbjct 201846 TTCTCCATAAAGTTAAATGGATTTTCTACTTTGAAAATCTTGTTAAAGCCCAGCT-TCAG 201904
Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360
|||| |||||||| |||||||| || || || ||| || |||||||| || ||
Sbjct 201905 CATAAGCCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAAT 201964
Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420
| || |||| | |||| ||| | || | ||||| || ||| | | |||
Sbjct 201965 TAGCTTCTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGCATTGATAAT 202024
Query 21421 TATATTTATTA-TCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATG 21479
| | | | ||| || | | | | || | | | ||||| | ||||| || |
Sbjct 202025 TGTTTCTTTTACTCTCTGCTCTGAT-GGTTTGTGAAGCAGGTGTTTGAGCATCAGGCAGG 202083
Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539
|||| ||||| || ||||| ||||| || || || | |||||| |||||||| | || |
Sbjct 202084 CAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAG 202143
Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGC 21599
|||| | ||||| || || | ||| |||||||| || |
Sbjct 202144 GCATCAGTCCTCGTTTCTTGAGCCA----------------------GAAAAGAAGATTC 202181
Query 21600 CCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCC 21659
|| | |||||||| || || | ||||| || || |||| ||||| ||| |||
Sbjct 202182 TGTCCATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCA 202241
Query 21660 ATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAA 21719
| | ||||| | || || | || | |||| ||||| ||| | || || || |
Sbjct 202242 AATGCAAGGCCCA--TGGCTTTCTTCTTCACACAAGGCATTGTTTCAGTGGCATTGAAGA 202299
Query 21720 GATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAG 21779
|| | |||| | | || | || ||||||||||||||
Sbjct 202300 GAAATTCCCTTTCTTTGAAGTCTTTAATATAAGTGTCAATAAGAAGACTATACATTTCAG 202359
Query 21780 AATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAA 21839
||||||| ||||| || || || || || || || |||| | || |||| | |||||
Sbjct 202360 AATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAA 202419
Query 21840 CCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAA 21899
| || |||| | | |||| || || |||||||| | ||||| || ||| | |
Sbjct 202420 CTTCTTGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCACCTGCCGCAGAGA 202479
Query 21900 ATGCCAATATATTTTTTATAAAATATCGTTC 21930
| |||| || | |||||||||| ||||
Sbjct 202480 AAGCCAGAAT-GTGGATATAAAATATTGTTC 202509
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712
||||| || | |||||| | | ||||| | | | | || |||| |||||| || | |
Sbjct 248249 AGTTCCTCCTGGCTTTCAAACTGAGCAAGATTGGATGCTAAGGAAGCACAAAAAGTCTGG 248190
Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772
| ||||||||||| | ||||||||||| ||||| || || | |||||||||||||
Sbjct 248189 CTGAATGTCCAATTCCCTACGTCTTCAGAAAAATAAAAACACTTGTTTCCAAATCCAATC 248130
Query 130773 CATCCCTTTGGGCAAGTAACa 130793
|| | | |||||| ||| ||
Sbjct 248129 CAATCTTCTGGGCAGGTAGCA 248109
>seq299
Length=1791600
Score = 116 bits (128), Expect = 4e-21
Identities = 318/478 (67%), Gaps = 8/478 (2%)
Strand=Plus/Minus
Query 21188 TGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCC 21247
||||| || |||| |||| || || |||||||| || ||||| || || || ||||
Sbjct 1083428 TGATACTCTGAAACTTTTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 1083369
Query 21248 ATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAA-CCCAGTTCTGATAA-TA 21305
||||||||||| |||||||| | | ||| | || | | || || ||||| |||| ||
Sbjct 1083368 ATAAAATCAAAGGGATTTTCTGCCTGAAAAACCTT-TGAGAATCCAAGTTC-CATAAGTA 1083311
Query 21306 ATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATT 21365
|||| || |||| |||||| ||||| || | ||| || |||| ||||| | || |
Sbjct 1083310 ATCTTTCAGCTATAAATTCAATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGC 1083251
Query 21366 TTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATAT 21425
|| || | ||| ||| ||||| | || || ||| || | |||||| || |
Sbjct 1083250 CAACTGGCAAGTCTTCTGTTAAAAACTCCTGCTCAATTTTGACAGCATTAACAATGATCT 1083191
Query 21426 TTATTATCCTAGATGTACT--AGGGGGATACAATAATTGTTTAAACATCAAACATGCAAA 21483
| | ||| | | || || || | ||| | | ||||| | || |||||
Sbjct 1083190 CCCTCACCCT-TTTCTTCTGAAGTCTTATTTACTAAGTACTGAAACACTAGGCAAGCAAA 1083132
Query 21484 ATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCAT 21543
||| | | | ||||||| || | || | ||||| |||||||| | || || ||
Sbjct 1083131 GTCATAGAGAAGTTCTTCATCTCTGTTGATCAGCTCATTGGAAAATGTGAGTCCAGGGAT 1083072
Query 21544 TAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTC 21603
|||||||| |||||||| || || | ||||| | |||| | |||||||| || ||
Sbjct 1083071 GGGACCTCTCTTCTTTAACCAGAAAATAGTAGCAAA-GATCCTCAGAAGAAAATTCCTTC 1083013
Query 21604 AACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCAT 21661
|| | | | || || | || ||| || | ||||| | | |||| | |||||||
Sbjct 1083012 CACAGAACTGATGGCCACCACTCTTTCCCCAAAAGTAGACTTTCTATCTACTATCCAT 1082955
>seq11673
Length=1157
Score = 96.9 bits (106), Expect = 4e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181
|| |||||||| |||||||| || | ||| ||||||| |||||||| | ||||
Sbjct 216 TTCATTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTCGGATTTGACATCACTCCC 275
Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241
|| | ||||| || | ||||| || || || || || ||||| ||||| | ||| |||
Sbjct 276 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATA 335
Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267
|||||||| ||||||||||||||
Sbjct 336 TTCTCCATAAAGTCAAATGGATTTTC 361
>seq131
Length=5549739
Score = 86.0 bits (94), Expect = 7e-12
Identities = 118/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825
||| ||||||| |||||| || |||||| | || | ||| || || || ||||| | |
Sbjct 3233048 ACTCTACATTTTAGAATGCATGTTTTCTGTGGCAACCTGGAAGCCATAGAAACAGCCCAC 3232989
Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885
|||| | |||||| || |||| || |||| ||||||||| |||| |||||
Sbjct 3232988 TTCTGTAATTTGAACTTCTTGGCTAAATTATTCCACCAAATTTTCATTTGCTATGCCATC 3232929
Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTC 21930
||| || ||||| || |||| | | |||||||||||||||
Sbjct 3232928 ACTTGCTGCAAAGAAAGCCAGGACAAGCAATATAAAATATCGTTC 3232884
>seq2
Length=46620681
Score = 86.0 bits (94), Expect = 7e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185
|||||||||| ||||| || | ||| || |||||| ||| || ||||| | |
Sbjct 41397925 TTTAAAAATCTGCATCCAAAGTGAAGACGTTATCTGTGGTTTCTGCCATAACGGCAAAAC 41397866
Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245
||||| || ||||| ||| || || |||||||| || ||||| || || || ||
Sbjct 41397865 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 41397806
Query 21246 CCATAAAATCAAATGGATTTTC 21267
||||||||||||| ||||||||
Sbjct 41397805 CCATAAAATCAAAGGGATTTTC 41397784
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531817803528920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |