Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq536 161 1e-34 seq299 116 4e-21 seq11673 96.9 4e-15 seq131 86.0 7e-12 seq2 86.0 7e-12 >seq536 Length=337149 Score = 161 bits (178), Expect = 1e-34 Identities = 520/811 (64%), Gaps = 29/811 (4%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || |||||||| |||||||| || | ||| ||||||| | || ||||| | |||| Sbjct 201726 TTCATTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTCCC 201785 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 ||||| ||||| || | |||| || || || || || || || ||||| | ||| ||| Sbjct 201786 ATTTTCTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAGTGAAATA 201845 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||||| | |||||||||||| ||| || || || ||| | ||||| | | | Sbjct 201846 TTCTCCATAAAGTTAAATGGATTTTCTACTTTGAAAATCTTGTTAAAGCCCAGCT-TCAG 201904 Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 |||| |||||||| |||||||| || || || ||| || |||||||| || || Sbjct 201905 CATAAGCCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAAT 201964 Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420 | || |||| | |||| ||| | || | ||||| || ||| | | ||| Sbjct 201965 TAGCTTCTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGCATTGATAAT 202024 Query 21421 TATATTTATTA-TCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATG 21479 | | | | ||| || | | | | || | | | ||||| | ||||| || | Sbjct 202025 TGTTTCTTTTACTCTCTGCTCTGAT-GGTTTGTGAAGCAGGTGTTTGAGCATCAGGCAGG 202083 Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539 |||| ||||| || ||||| ||||| || || || | |||||| |||||||| | || | Sbjct 202084 CAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAG 202143 Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGC 21599 |||| | ||||| || || | ||| |||||||| || | Sbjct 202144 GCATCAGTCCTCGTTTCTTGAGCCA----------------------GAAAAGAAGATTC 202181 Query 21600 CCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCC 21659 || | |||||||| || || | ||||| || || |||| ||||| ||| ||| Sbjct 202182 TGTCCATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCA 202241 Query 21660 ATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAA 21719 | | ||||| | || || | || | |||| ||||| ||| | || || || | Sbjct 202242 AATGCAAGGCCCA--TGGCTTTCTTCTTCACACAAGGCATTGTTTCAGTGGCATTGAAGA 202299 Query 21720 GATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAG 21779 || | |||| | | || | || |||||||||||||| Sbjct 202300 GAAATTCCCTTTCTTTGAAGTCTTTAATATAAGTGTCAATAAGAAGACTATACATTTCAG 202359 Query 21780 AATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAA 21839 ||||||| ||||| || || || || || || || |||| | || |||| | ||||| Sbjct 202360 AATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAA 202419 Query 21840 CCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAA 21899 | || |||| | | |||| || || |||||||| | ||||| || ||| | | Sbjct 202420 CTTCTTGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCACCTGCCGCAGAGA 202479 Query 21900 ATGCCAATATATTTTTTATAAAATATCGTTC 21930 | |||| || | |||||||||| |||| Sbjct 202480 AAGCCAGAAT-GTGGATATAAAATATTGTTC 202509 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 ||||| || | |||||| | | ||||| | | | | || |||| |||||| || | | Sbjct 248249 AGTTCCTCCTGGCTTTCAAACTGAGCAAGATTGGATGCTAAGGAAGCACAAAAAGTCTGG 248190 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| | ||||||||||| ||||| || || | ||||||||||||| Sbjct 248189 CTGAATGTCCAATTCCCTACGTCTTCAGAAAAATAAAAACACTTGTTTCCAAATCCAATC 248130 Query 130773 CATCCCTTTGGGCAAGTAACa 130793 || | | |||||| ||| || Sbjct 248129 CAATCTTCTGGGCAGGTAGCA 248109 >seq299 Length=1791600 Score = 116 bits (128), Expect = 4e-21 Identities = 318/478 (67%), Gaps = 8/478 (2%) Strand=Plus/Minus Query 21188 TGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCC 21247 ||||| || |||| |||| || || |||||||| || ||||| || || || |||| Sbjct 1083428 TGATACTCTGAAACTTTTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 1083369 Query 21248 ATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAA-CCCAGTTCTGATAA-TA 21305 ||||||||||| |||||||| | | ||| | || | | || || ||||| |||| || Sbjct 1083368 ATAAAATCAAAGGGATTTTCTGCCTGAAAAACCTT-TGAGAATCCAAGTTC-CATAAGTA 1083311 Query 21306 ATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATT 21365 |||| || |||| |||||| ||||| || | ||| || |||| ||||| | || | Sbjct 1083310 ATCTTTCAGCTATAAATTCAATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGC 1083251 Query 21366 TTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATAT 21425 || || | ||| ||| ||||| | || || ||| || | |||||| || | Sbjct 1083250 CAACTGGCAAGTCTTCTGTTAAAAACTCCTGCTCAATTTTGACAGCATTAACAATGATCT 1083191 Query 21426 TTATTATCCTAGATGTACT--AGGGGGATACAATAATTGTTTAAACATCAAACATGCAAA 21483 | | ||| | | || || || | ||| | | ||||| | || ||||| Sbjct 1083190 CCCTCACCCT-TTTCTTCTGAAGTCTTATTTACTAAGTACTGAAACACTAGGCAAGCAAA 1083132 Query 21484 ATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCAT 21543 ||| | | | ||||||| || | || | ||||| |||||||| | || || || Sbjct 1083131 GTCATAGAGAAGTTCTTCATCTCTGTTGATCAGCTCATTGGAAAATGTGAGTCCAGGGAT 1083072 Query 21544 TAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTC 21603 |||||||| |||||||| || || | ||||| | |||| | |||||||| || || Sbjct 1083071 GGGACCTCTCTTCTTTAACCAGAAAATAGTAGCAAA-GATCCTCAGAAGAAAATTCCTTC 1083013 Query 21604 AACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCAT 21661 || | | | || || | || ||| || | ||||| | | |||| | ||||||| Sbjct 1083012 CACAGAACTGATGGCCACCACTCTTTCCCCAAAAGTAGACTTTCTATCTACTATCCAT 1082955 >seq11673 Length=1157 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || |||||||| |||||||| || | ||| ||||||| |||||||| | |||| Sbjct 216 TTCATTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTCGGATTTGACATCACTCCC 275 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||| ||||| | ||| ||| Sbjct 276 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATA 335 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| |||||||||||||| Sbjct 336 TTCTCCATAAAGTCAAATGGATTTTC 361 >seq131 Length=5549739 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 ||| ||||||| |||||| || |||||| | || | ||| || || || ||||| | | Sbjct 3233048 ACTCTACATTTTAGAATGCATGTTTTCTGTGGCAACCTGGAAGCCATAGAAACAGCCCAC 3232989 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 |||| | |||||| || |||| || |||| ||||||||| |||| ||||| Sbjct 3232988 TTCTGTAATTTGAACTTCTTGGCTAAATTATTCCACCAAATTTTCATTTGCTATGCCATC 3232929 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTC 21930 ||| || ||||| || |||| | | ||||||||||||||| Sbjct 3232928 ACTTGCTGCAAAGAAAGCCAGGACAAGCAATATAAAATATCGTTC 3232884 >seq2 Length=46620681 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| || | ||| || |||||| ||| || ||||| | | Sbjct 41397925 TTTAAAAATCTGCATCCAAAGTGAAGACGTTATCTGTGGTTTCTGCCATAACGGCAAAAC 41397866 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| || ||||| || || || || Sbjct 41397865 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 41397806 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 41397805 CCATAAAATCAAAGGGATTTTC 41397784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531817803528920