Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq536 297 2e-75
seq59 188 9e-43
seq131 187 3e-42
seq260 181 1e-40
seq58 167 3e-36
seq64 123 3e-23
seq30 122 1e-22
seq3 120 4e-22
seq2 107 2e-18
seq11673 86.0 8e-12
>seq536
Length=337149
Score = 297 bits (328), Expect = 2e-75
Identities = 617/914 (68%), Gaps = 40/914 (4%)
Strand=Plus/Plus
Query 32951 TGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTC 33007
|||| ||||||||||| |||| || | |||| ||||||| | || ||||| ||||
Sbjct 201724 TGTTCATTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTC 201783
Query 33008 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA 33067
||||||| || || || || || | || || || || |||||||| ||||| | ||| |
Sbjct 201784 CCATTTTCTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAGTGAAA 201843
Query 33068 TATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAA-TTCA 33126
|||| ||||| || | ||| ||||| || || |||| || ||||| |||| ||||
Sbjct 201844 TATTCTCCATAAAGTTAAATGGATTTTCTACTTTGAAAATCTTGTTAAAGCCCAGCTTCA 201903
Query 33127 GAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCT 33186
| | | | ||||| || || ||||| || || ||||||| |||||||| ||
Sbjct 201904 GCA-TAAGCCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCA 201962
Query 33187 ATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTT 33246
|| || || | || | || | || || || || || || || | |||| |
Sbjct 201963 ATTAGCTTCTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGCAT---TG 202019
Query 33247 ATAATAGAT-CTAACGGTTTCTTCACTC--GGTGGATGCAATAAATGTTTAAACATCAAA 33303
||||| | | || | ||| | || ||| || | | ||||| | |||||
Sbjct 202020 ATAATTGTTTCTTTTACTCTCTGCTCTGATGGTTTGTGAAGCAGGTGTTTGAGCATCAGG 202079
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
|| || || || ||||| | |||||| ||||| ||||| ||||| |||||||| |||||
Sbjct 202080 CAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 202139
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
|| ||||| || || || || || ||||| |||||||||
Sbjct 202140 CCAGGCATCAGTCCTCGTTTCTTGAGCCA----------------------GAAAAGAAG 202177
Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33480
|||| || | ||||||||||| | || | |||||||| | | | ||||
Sbjct 202178 ATTCTGTCCATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCA 202237
Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540
||| | | ||||| ||| ||||| || ||||||||||| ||||| |||||||
Sbjct 202238 ATCAAATGCAAGGCCCAT--GGCTTTCTTCTTCACACAAGGCATTGTTTCAGTGGCATTG 202295
Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600
|||||| | | |||| || ||||||| |||||| || || | |||||||||||||
Sbjct 202296 AAGAGAAATTCCCTTTCTTTGAAGTCTTTAATATAAGTGTCAATAAGAAGACTATACATT 202355
Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660
|| ||||| |||||||| ||||| || || || || ||||||| | || || |||||
Sbjct 202356 TCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATT 202415
Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720
|| |||||| | |||| | ||| ||||||| || || ||||| | |||| || |||
Sbjct 202416 TGAACTTCTTGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCACCTGCCGCA 202475
Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 33780
| || |||| | || ||||||||||| ||| || || | || | ||| |
Sbjct 202476 GAGAAAGCCAGAATGTG-GATATAAAATATTGTTCCTCAGGCTTCAGGGCTTCCCAGTGC 202534
Query 33781 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 33840
| || || | || | | | || || || |||||||||| || ||||| || || |||
Sbjct 202535 TGAATGTCCCTGGA-AGAGCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTA 202593
Query 33841 TACATGTTCCAGAT 33854
|||| | || |||
Sbjct 202594 CACATCTGCCGGAT 202607
>seq59
Length=10161055
Score = 188 bits (208), Expect = 9e-43
Identities = 372/548 (68%), Gaps = 12/548 (2%)
Strand=Plus/Minus
Query 33317 AGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGC 33376
|||| | |||||||||||| || || ||||| |||||||| ||||| || ||||| ||
Sbjct 9902958 AGTGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTT 9902899
Query 33377 CACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTC--TAC 33434
| || | ||||||||||| || || ||||| ||||||||||||||| || | ||
Sbjct 9902898 C-----TTATGAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATTTCTCCCGTAG 9902844
Query 33435 TGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTG 33491
|| || ||| | | || | | || || | | | |||| ||||
Sbjct 9902843 TG--GCCAAGACTACAACACGTTTTCTGTAGGTAGCTTCTTTGTCCCCAGTCCAACACAA 9902786
Query 33492 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 33551
|| || || || ||||| || || ||||||||| |||| |||||| | ||||| | |
Sbjct 9902785 GGCACAGTCTGCTTTCTTCTTCACCCAAGGCATCATTTCAATGGCACTGGAGAGAAATTC 9902726
Query 33552 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 33611
| || | || ||||| ||| | || || | |||| ||| ||||| ||||| ||
Sbjct 9902725 CCTGTCTTAGGAATTTTTAATGTAAATGTCAATAAGGAGACCATATATTTCAGAATGTAT 9902666
Query 33612 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGT 33671
|||||| || || | || || || ||||||| | || || |||| || || |||
Sbjct 9902665 GTTTTCCATAGCAACTTGGAAGCCACAGAAACAGCCGGCTTCTATAATTTGAACCTCTTG 9902606
Query 33672 ACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33731
| |||||| | | ||| ||||||| | |||| || |||| ||| |||| || || |
Sbjct 9902605 GCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCACGTGCTTCAAAGAAAGCTAG 9902546
Query 33732 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 33791
|||||| |||||||||| ||| || || | || | || | | | || ||
Sbjct 9902545 AACATGTGATATAAAATATCATTCCTCAGGCTTCAGGGCCTGCCGGTGCTGACTGTCCTT 9902486
Query 33792 AGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCA 33851
|| | ||| || || ||| ||||||| || || ||||| || || |||||||| | |||
Sbjct 9902485 GGAAAGATCCACCTCCTCCGCTGTCCAGAAGGACGCCTCGGCTTTCTTATACATTTGCCA 9902426
Query 33852 GATGTCAT 33859
|| ||||
Sbjct 9902425 AATATCAT 9902418
>seq131
Length=5549739
Score = 187 bits (206), Expect = 3e-42
Identities = 268/376 (71%), Gaps = 4/376 (1%)
Strand=Plus/Minus
Query 33389 GCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33448
|||| ||||| || | || || |||||||||||||||||||| | | |||||||| |
Sbjct 3233252 GCCAGAATATTGACACAAAAGAACCAGAAAAGAAGATTCCTTCCGCAGTGGCAAAGGCTA 3233193
Query 33449 TAA---GTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCT 33505
|| || | | || || | ||| ||||| | |||||||| || |
Sbjct 3233192 AAACATGTTCTTGTAGGTAGCCT-CTTTGTTCCCAATCCAACTCAAGGCCCAATCTGCTT 3233134
Query 33506 TCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTAT 33565
|| | || |||||||||||| |||| || ||||| ||||| | | |||| ||| ||
Sbjct 3233133 TCCTCTTCACACAAGGCATCCTTTCAATAGCATTGGAGAGAAATTCCCTTTCTTTAGAAT 3233074
Query 33566 CTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCA 33625
|||||| ||||| || || | ||||| ||||||| ||||| |||||||| |||| |
Sbjct 3233073 CTTTAATGTAAGTGTCAATAAGGAGACTCTACATTTTAGAATGCATGTTTTCTGTGGCAA 3233014
Query 33626 TCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCG 33685
||| || || |||||||| | | || ||||| || |||||| | |||| ||||
Sbjct 3233013 CCTGGAAGCCATAGAAACAGCCCACTTCTGTAATTTGAACTTCTTGGCTAAATTATTCCA 3232954
Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745
||||||||||||| |||| || ||||| |||||||| || |||| ||| | |||||
Sbjct 3232953 CCAAATTTTCATTTGCTATGCCATCACTTGCTGCAAAGAAAGCCAGGACAAGCAATATAA 3232894
Query 33746 AATATTTTTCGTCTGG 33761
||||| ||| || ||
Sbjct 3232893 AATATCGTTCCTCAGG 3232878
>seq260
Length=2306558
Score = 181 bits (200), Expect = 1e-40
Identities = 617/947 (65%), Gaps = 22/947 (2%)
Strand=Plus/Plus
Query 32948 TTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAA 33004
|| |||| |||| |||||| |||| || | ||||| ||| || | || |||||
Sbjct 2179926 TTCTGTTCATTTAGAAGTCAGCATCCAAGGTAAAATAATTCCCTGTTGGATTTGACATCT 2179985
Query 33005 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATG 33064
|||||| | || || ||||| || || || || || ||| | || |||||| |
Sbjct 2179986 CTCCCACCCTCTGATACTCACCTACTTTCTTCTCAAAGAAGTTAATCTTGTCTTCCATTA 2180045
Query 33065 ATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAA-T 33123
| ||||| ||||| || ||||| | ||| || | ||| || |||| |||| |
Sbjct 2180046 A-ATATTCTCCATAAAGTCAAATGAATTTTCTACTCTGAAAACCTTGCTAAAGCCCAGCT 2180104
Query 33124 TCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33183
||| | | || || | || |||||||| ||||| ||||||| || || ||
Sbjct 2180105 TCATCA-TAAACCTGTGTGCCACGAATTCAATATACTGCTTCATCAAAGTGCAGTTTATC 2180163
Query 33184 CCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCT 33243
|| | | || || || | |||| | | | || || ||||| | | || |||| |
Sbjct 2180164 CCAGTGAACTTCACAGGCAAAGCCTCCATGATGAACTCCTGTTCTAAGCTGACAGCAT-T 2180222
Query 33244 GTTATAATAGATCTA--ACGGTTT-CTTCACTCGGTGGATGCAATAAATGTTTAAACATC 33300
| || |||| ||| || | | || || | | | | || | | ||||| ||||||
Sbjct 2180223 GATA-AATATTTCTTTTACTCTCTGCTCCAATGGTTTG-TGTAGCAGGTGTTTGAACATC 2180280
Query 33301 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTG 33360
| || || | || | | | |||||| ||||| ||||| ||||| |||||| |
Sbjct 2180281 AGGCAAGCAGAGTCATAAAGTAAACCCTCATCTCTGCTAATAAGTTCACTGGAAAC--TT 2180338
Query 33361 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAG 33420
|| || ||||| | || | || || | | | ||||| || | || || || | |||
Sbjct 2180339 AGGCCAGGCATCAATCCCTGTTTCTTGAACTAGAATATTGATTCAAAAGAAACATAGAAG 2180398
Query 33421 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCA 33477
||| ||||||| || || ||||||| | || | |||| || | | | ||||
Sbjct 2180399 AAGTTTCCTTCCACAGCCACAAAGGCTACAACACATTCTCTGTAGGTAGCTTCTTTGTCC 2180458
Query 33478 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537
||||| | || ||| || || || |||||| ||||||| ||||| ||||||
Sbjct 2180459 CCAATCCAATGCAAGACCTAATTTGCTTTTTTCTTTACATAAGGCATTGTTTCAATGGCA 2180518
Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597
|| |||||| | | |||| || |||||| ||||| || || | |||||||||
Sbjct 2180519 TTGAAGAGAAATTCCCTTTCTTTGAAATCTTT----TAAGTGTCAATAAGGAGACTATAC 2180574
Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657
||||| |||| | |||||| |||| || || || | |||||||| | | || |||
Sbjct 2180575 ATTTCACAATGTAGTTTTTCA-TGGCAATTTGGAAGTCATAGAAACAGTGAACTTCTGTA 2180633
Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717
|| || ||||| | |||| ||| ||||||||||||| ||||| || ||||| |||
Sbjct 2180634 ATTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTACTATGCCATCACTTGCT 2180693
Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 33777
||||| || || | ||| ||||||||| ||| || | | | || | | |
Sbjct 2180694 GCAAAGAAATTCATAATATGAGACATAAAATATCATTCCTCAGATTTCAGGGCTTCCTAG 2180753
Query 33778 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837
| || || || || ||| | || || | |||| |||| || | || |||||
Sbjct 2180754 TGCAGAATGTCCTTGGAAATAGCCACCTCCCCATATGTCAAAAAGGAACCTTCAGCCTTC 2180813
Query 33838 TTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884
||| | || | ||| || |||| ||| ||| || || | |||||
Sbjct 2180814 TTAGAAATCTGCCAAATATCATGGTATCTGATAGGAAAGAAGACAAA 2180860
>seq58
Length=10378366
Score = 167 bits (184), Expect = 3e-36
Identities = 542/829 (65%), Gaps = 41/829 (5%)
Strand=Plus/Plus
Query 33004 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33063
||||| || || || || ||| | || | || || || || ||||| || ||||||| |
Sbjct 1968513 ACTCCAATCTTCTGATACTCAACTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGT 1968572
Query 33064 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 33123
|| ||||| ||||| | |||| ||||| || | |||| | || | |||| |
Sbjct 1968573 GAAATATTCTCCATAATGTCAAGTGGATTTTCTACTCTGAAAATCTCGATAGAGCCCAGT 1968632
Query 33124 T-CAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCAT 33182
| ||| | | | || || || || ||||| || | ||||||| || |||||
Sbjct 1968633 TTCAGCA-TAAGCCTGTCTGCTACAAATTCAATGCACTGCTTCATCAAAGAGCAGTTCAT 1968691
Query 33183 TCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATC 33242
|| || || || || || | ||| || || || || ||||| || || ||
Sbjct 1968692 CCCAATGAGCTTCACAGGCAAGGCCTTGGTGAGGAACTCCTGTTCTATCCTAACAAAAT- 1968750
Query 33243 TGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAA 33302
|| || | || | || | |||| | | | ||| || | || | ||| ||||| |
Sbjct 1968751 TGATA-ATTACTTTTATCCTCTTCTCC-CACAGTG--TGTAGCAAGTATTTGAACATTGA 1968806
Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362
|| || ||||| | || ||||| ||||| ||||| |||||||| |||||
Sbjct 1968807 GCAGGCAAAATCAC-----------TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAG 1968855
Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG--GAAGCGAATGATCCAGAAAAG 33420
|| ||||| || | | || ||||| || ||||| || || || || |||||||||
Sbjct 1968856 ACCAGGCATCAGCCGTCATTTCTTAAGTCAGAATATATTGATGCAAAAGAACCAGAAAAG 1968915
Query 33421 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT 33480
|||||| |||| || ||||||||| | | ||||||| || | | | |
Sbjct 1968916 AAGATTTCTTCCACATTAGCAAAGGCTACATCATGCTCTCCACAAATAGACTTTT----T 1968971
Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540
|||| || || |||| | ||||| || |||||||||||| |||| || ||||
Sbjct 1968972 ATCCTGATT----CCAAATCTGTTTTCTTCTTCACACAAGGCATCATTTCAGTGCCATTG 1969027
Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600
|||| | | | |||||| || || |||| | || | || | | ||| || |||
Sbjct 1969028 AAGATAAATTCTTTTTCTTTGGAATTTTTA----ATGTGACAATAAGGAAACTGTATATT 1969083
Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660
| ||||| || ||| | ||||| || || ||||| |||||||| || || |||||
Sbjct 1969084 ACAGAATGTATTTTTCCTATGGCAATTTGGAATCCATAGAAACAGTGGGCTTCTGTAATT 1969143
Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720
|| | |||| | |||| | | | |||| ||||||| | ||| || |||| ||||
Sbjct 1969144 TGAATTTCTTGGCTAAATTGCTTCACCAATTTTTCATGTATTATGCCATCAC---CTGCT 1969200
Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 33780
|||| |||| |||||| |||||||| | | || || | | || |||| |
Sbjct 1969201 AAAA--GCCAGAACATGTGCTATAAAATCTCTCTCCTCAAGCTTCAG-GGCTTCCCAAGG 1969257
Query 33781 TTGATATCTT--TAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 33827
|||| || || | | | ||||||||| | ||||||||||| || ||
Sbjct 1969258 TTGA-ATGTTCCTGAAAAGATCTACTTCCTTAACTGTCCAAAAGGAAGC 1969305
>seq64
Length=9676502
Score = 123 bits (136), Expect = 3e-23
Identities = 100/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| ||||| ||||| |||||||| ||||| || ||||| || || || || |
Sbjct 6351547 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 6351488
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| ||||| ||||| || || ||||||||||||||||| || || ||||||||||
Sbjct 6351487 TGAGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGG 6351428
Query 33446 C 33446
|
Sbjct 6351427 C 6351427
Score = 91.5 bits (100), Expect = 2e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624
||||||| ||||| || || | |||||||||||||| ||||| |||||||| |||||
Sbjct 6349677 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 6349618
Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684
|| || || || |||||||| | || || |||| || |||||| | |||||| |||
Sbjct 6349617 ATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAACTTGAACTTCTTGGCTAAATCGCTCC 6349558
Query 33685 GCC 33687
||
Sbjct 6349557 ACC 6349555
>seq30
Length=14751797
Score = 122 bits (134), Expect = 1e-22
Identities = 109/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396
|| ||||||||||| ||||| ||||| ||||| || ||||| ||||| || ||||| |
Sbjct 820281 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATG 820340
Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456
||||||||||| |||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 820341 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 820400
Query 62457 CTATTTCTAAGACCGTA 62473
|| ||||| | ||| ||
Sbjct 820401 CTGTTTCTTACACCATA 820417
Score = 118 bits (130), Expect = 1e-21
Identities = 118/153 (77%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271
|| ||| |||||||| |||||||| |||||||||||||| | || ||||| |||| ||
Sbjct 832087 CTCCACCCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCTCG 832146
Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331
|| ||||| |||||||| ||||| || | ||| |||||| | | || || |||||||
Sbjct 832147 CTGCTCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 832206
Query 63332 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63364
||||||| ||| || || | ||||||| ||
Sbjct 832207 AGGTTCCAGGTAAATAGCAAATGCTCCAGGACG 832239
>seq3
Length=41493964
Score = 120 bits (132), Expect = 4e-22
Identities = 151/207 (73%), Gaps = 3/207 (1%)
Strand=Plus/Plus
Query 31095 TTGTACTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 31154
||| |||||||| | ||||||||| | || |||| | | || ||||| ||||||| |||
Sbjct 8287232 TTGAACTTCTTCTATATCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCTATTCGATC 8287291
Query 31155 TCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCC 31214
|| | ||||| | |||| | ||| ||| ||||| | | || || || |||||
Sbjct 8287292 ACCTTTTTTTACTTCAAACTTCTCTTTACCAAAATTAAACAACACAACACCAATATTTCC 8287351
Query 31215 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACC 31271
||||||||||| ||||| ||||| |||||| ||| || | |||| | ||| ||
Sbjct 8287352 TCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTATTTTGCAGCCAGGCC 8287411
Query 31272 AGACCTAGGAGCTATTCTACCATAGCA 31298
||| | ||||||||||| ||||||||
Sbjct 8287412 AGAACGTGGAGCTATTCTTCCATAGCA 8287438
>seq2
Length=46620681
Score = 107 bits (118), Expect = 2e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387
|| ||||| || || ||||| |||||||| ||||| || ||||| || || | ||| ||
Sbjct 41377775 TCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCTTT 41377716
Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446
||||| ||||| | ||| || ||||| || ||||| |||||||| || |||||||||||
Sbjct 41377715 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 41377657
>seq11673
Length=1157
Score = 86.0 bits (94), Expect = 8e-12
Identities = 109/148 (74%), Gaps = 3/148 (2%)
Strand=Plus/Plus
Query 32948 TTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TC--TTGAGACATAA 33004
|| |||| ||||||||||| |||| || | |||| ||||||| || | ||||| |
Sbjct 211 TTCTGTTCATTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTCGGATTTGACATCA 270
Query 33005 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATG 33064
||||||| | || || || || || | || || || || ||||| || ||||| | ||
Sbjct 271 CTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTG 330
Query 33065 ATATATTTTCCATGAAATCAAACGGATT 33092
| ||||| ||||| || ||||| |||||
Sbjct 331 AAATATTCTCCATAAAGTCAAATGGATT 358
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622849996876280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |