Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq30 100 7e-16
seq64 91.5 4e-13
>seq30
Length=14751797
Score = 100 bits (110), Expect = 7e-16
Identities = 114/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170
|| ||| |||| |||| ||||||||| || || |||| |||||||| || || || |||
Sbjct 830463 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCGTACATG 830404
Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230
| ||||||||||| || || || ||| |||||||||| |||| || || || ||
Sbjct 830403 CTCTACAAAGATTCTTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACCATCAAGTGC 830344
Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263
|||||||| || || || || | || || |||
Sbjct 830343 AGCAACCTGTGCACAGAAATAGTGGAGTATACC 830311
>seq64
Length=9676502
Score = 91.5 bits (100), Expect = 4e-13
Identities = 100/133 (75%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548
|||||| || | || ||||||| || || || || ||||||||||| | ||| | ||
Sbjct 6351415 GAACGTGTTGTAGCCTTTGCTGCTGTGGAGGGAATCTTCTTTTCTGGTTCTTTTGCTTCA 6351474
Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608
|| || ||||| || ||||| | | | ||||| || || || ||||| ||||| | |||
Sbjct 6351475 ATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATT 6351534
Query 22609 AGCCGAGATGAGG 22621
||| |||||||||
Sbjct 6351535 AGCAGAGATGAGG 6351547
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303145143661706
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |