Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq14 89.7 4e-13 >seq14 Length=21378024 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || || ||||| || ||||| ||| |||| ||| |||| Sbjct 6329731 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 6329790 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | || ||| |||||| || || || ||| |||| ||||||| Sbjct 6329791 GACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATCAG 6329850 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || || | |||||||||||| | || |||| | || | | ||||| ||| Sbjct 6329851 CAGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGATTACAAC 6329910 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || |||||||| || | || ||||| | | ||||||| || Sbjct 6329911 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGG 6329957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425279289625960