Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq14 105 6e-18
>seq14
Length=21378024
Score = 105 bits (116), Expect = 6e-18
Identities = 166/234 (71%), Gaps = 3/234 (1%)
Strand=Plus/Minus
Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061
|||| |||||| |||| || ||||| || || | ||| ||||| || || |||||||||
Sbjct 6329963 ATGATGCCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAA 6329904
Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121
|| | ||||| ||||| ||||| ||||| || | || | ||||||||| ||
Sbjct 6329903 TCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCA 6329844
Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGA 131180
|| ||||| || || ||||| ||| ||| || |||| | ||| | || || |||
Sbjct 6329843 GGTGGGATGCCCTCCTTGTC-TTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGG 6329785
Query 131181 CTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
||| | |||| ||| | ||| || || || || || || || || ||||||||
Sbjct 6329784 CTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471939148302720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |