Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq536 158 1e-33
seq260 147 2e-30
seq59 116 4e-21
seq64 109 6e-19
seq58 91.5 2e-13
>seq536
Length=337149
Score = 158 bits (174), Expect = 1e-33
Identities = 499/770 (65%), Gaps = 30/770 (4%)
Strand=Plus/Plus
Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983
||||| || |||||||| |||||||| ||||||| |||||||| || | ||
Sbjct 201912 CTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATTAGCTTC 201971
Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043
|||| | || || || | ||| || | || || | ||| | | | |||||
Sbjct 201972 TCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGCATTGATAATTGTTTCT 202031
Query 93044 ATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103
||||||| | || |||||| || | | | ||| ||| | ||| ||||||||
Sbjct 202032 TTTACTCTCTGCTCTGATGGTTTGTGAAGCAGGTGTTTGAGCATCAGGCAGGCAAAGTCA 202091
Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGGTAACAG 93162
|||||||| || |||| || || || | ||||| ||||| | || || | |||
Sbjct 202092 CAGTGTAAACCCTCATCTC-TGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAG 202150
Query 93163 TCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCAC 93222
|||||||||||||||||| ||||| || || | ||||
Sbjct 202151 TCCTCGTTTCTTGAGCCA----------------------GAAAAGAAGATTCTGTCCAT 202188
Query 93223 GGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAA 93282
|| ||||| || |||| |||||| || | | || || | ||| | | ||
Sbjct 202189 AGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCAAATGCAA 202248
Query 93283 AGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342
||||| |||||| ||||| | |||||| | |||||| | || || || || | ||
Sbjct 202249 GGCCCAT--GGCTTTCTTCTTCACACAAGGCATTGTTTCAGTGGCATTGAAGAGAAATTC 202306
Query 93343 TCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGAC 93402
| || | | ||| || || || || || | ||| ||||||||||||||| |
Sbjct 202307 CCTTTCTTTGAAGTCTTTAATATAAGTGTCAATAAGAAGACTATACATTTCAGAATGTAT 202366
Query 93403 ATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462
|| ||||| ||||||||||| || ||||||| | ||||| || || || ||||||||
Sbjct 202367 GTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAACTTCTTG 202426
Query 93463 AGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAA 93522
|||| ||| || | ||| || || ||||| | ||| ||| ||| | |||||||
Sbjct 202427 GCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCACCTGCCGCAGAGAAAGCCAG 202486
Query 93523 TATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATAGATCTT 93581
|| || |||||||| || || ||| || || ||||| | | || | ||
Sbjct 202487 AATGTG-GATATAAAATATTGTTCCTCAGGCTTCAGGGCTTCCCAGTGCTGA-ATGTC-C 202543
Query 93582 TTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCC 93641
|| |||| | || || || | |||||||| || || || ||||| || |||| | ||
Sbjct 202544 CTGGAAGAGCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACACATCTGCC 202603
Query 93642 ATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCT 93691
|| | || | || || ||||| ||||| || || | ||| | |||
Sbjct 202604 GGATACCATGGTGTTCCATAGGAAAGATGACCAAGCGGTGGGGGCTCTCT 202653
>seq260
Length=2306558
Score = 147 bits (162), Expect = 2e-30
Identities = 432/658 (66%), Gaps = 11/658 (2%)
Strand=Plus/Plus
Query 93035 AAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC 93094
|| |||||| ||||||| | |||||| |||| | | ||| |||| | |||
Sbjct 2180227 AATATTTCTTTTACTCTCTGCTCCAATGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAA 2180286
Query 93095 GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACC 93153
||| |||| | ||||||| || |||| || || || | || || ||| ||| ||
Sbjct 2180287 GCAGAGTCATAAAGTAAACCCTCATCTC-TGCTAATAAGTTCACTG--GAAACTTAGGCC 2180343
Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTAT 93213
|| | || ||| ||||||||| | | |||||||| ||||| | || | || || |
Sbjct 2180344 AGGCATCAATCCCTGTTTCTTGAACTAGAATATTGATTCAAAAGAAACATAGAAGAAGTT 2180403
Query 93214 ACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGAT 93273
|||||||| || |||| || |||| || ||| | | || || | ||
Sbjct 2180404 TCCTTCCACAGCCACAAAGGCTACAACACATTCTCTGTAGGTAGCTTCTTTGTCCCCAAT 2180463
Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333
||| | || || ||| ||||||||||| | | |||| | |||||| || || || ||
Sbjct 2180464 CCAATGCAAGACCTAATTTGCTTTTTTCTTTACATAAGGCATTGTTTCAATGGCATTGAA 2180523
Query 93334 TAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTC 93393
|| | || | || | ||||| | || || || || | ||| |||||||||
Sbjct 2180524 GAGAAATTCCCTTTCTTTGAAATCT----TTTAAGTGTCAATAAGGAGACTATACATTTC 2180579
Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453
| |||| | || || || ||||||||||| | |||||||| | |||| || || ||
Sbjct 2180580 ACAATGTAGTTTTTC-ATGGCAATTTGGAAGTCATAGAAACAGTGAACTTCTGTAATTTG 2180638
Query 93454 CACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513
||||| || |||| ||| || | ||||||||| ||||| ||||| |||||||||
Sbjct 2180639 AACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAA 2180698
Query 93514 aaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGG 93572
||| || ||||| ||||||| | || ||| ||| || ||| | | | |
Sbjct 2180699 GAAATTCATAATATGAGACATAAAATATCATTCCTCAGATTTCAGGGCTTCCTAGTGCAG 2180758
Query 93573 ATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGT 93632
| | || || |||| | | || || | ||| |||| || |||| || || ||
Sbjct 2180759 A-ATGTCCTTGGAAATAGCCACCTCCCCATATGTCAAAAAGGAACCTTCAGCCTTCTTAG 2180817
Query 93633 ACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATC 93690
| || | ||| || || || ||| || ||||| | |||||| | | |||||| ||
Sbjct 2180818 AAATCTGCCAAATATCATGGTATCTGATAGGAAAGAAGACAAAGCAGTGAGGGTTCTC 2180875
>seq59
Length=10161055
Score = 116 bits (128), Expect = 4e-21
Identities = 405/624 (65%), Gaps = 11/624 (2%)
Strand=Plus/Minus
Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097
|||| | ||||||| | || |||| | |||| | || | | |||| ||| |||
Sbjct 9903024 ATTTATTTTACTCTCTGCTCTGATGGTGTGTGTAGCAGGTATTCGGACATCGGGCA-GCA 9902966
Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGG 93156
|| || | |||||||| ||||||| || | || | |||||| ||||| | || ||
Sbjct 9902965 AATTCAGAGTGTAAACCCTCGTCTC-TGCTGATAAGTTCATTGGAAAATGTGAGGCCAGG 9902907
Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216
| |||| || | ||||||||||||||| ||||| |||||||| || || |
Sbjct 9902906 CATCAGTTCTTAT-----GAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATTTC 9902852
Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276
| || | || || | |||| ||||| | | || || | ||||
Sbjct 9902851 TCCCGTAGTGGCCAAGACTACAACACGTTTTCTGTAGGTAGCTTCTTTGTCCCCAGTCCA 9902792
Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336
|| || || || ||||| ||||| | ||||| | |||| || || | | ||
Sbjct 9902791 ACACAAGGCACAGTCTGCTTTCTTCTTCACCCAAGGCATCATTTCAATGGCACTGGAGAG 9902732
Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396
| || | || | |||| | ||||| | || || | ||| ||| ||||||||
Sbjct 9902731 AAATTCCCTGTCTTAGGAATTTTTAATGTAAATGTCAATAAGGAGACCATATATTTCAGA 9902672
Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456
||| | || ||||| |||| |||||| || ||||||| | ||||| | || || ||
Sbjct 9902671 ATGTATGTTTTCCATAGCAACTTGGAAGCCACAGAAACAGCCGGCTTCTATAATTTGAAC 9902612
Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516
||||| ||||| || || ||||||||| | |||| ||||| |||| |||| ||
Sbjct 9902611 CTCTTGGCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCACGTGCTTCAAAGAA 9902552
Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATA 93575
||| | | ||| |||||||| | || ||| || || | || | | ||
Sbjct 9902551 AGCTAGAACATGTGATATAAAATATCATTCCTCAGGCTTCAGGGCCTGCCGGTGCTGACT 9902492
Query 93576 GATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA 93635
| || || |||||||| || || || | ||||| || || || || ||||| || ||||
Sbjct 9902491 G-TCCTTGGAAAGATCCACCTCCTCCGCTGTCCAGAAGGACGCCTCGGCTTTCTTATACA 9902433
Query 93636 TATCCCATATGTCTTGAT-ATTGA 93658
| | ||| || || || | |||||
Sbjct 9902432 TTTGCCAAATATCATGGTGATTGA 9902409
>seq64
Length=9676502
Score = 109 bits (120), Expect = 6e-19
Identities = 92/113 (81%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193
|||||| ||||| | || || | ||||||||||||||||||||| ||||||||||||
Sbjct 6351527 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGAAGCA 6351468
Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246
||| ||||||||| || || || ||||| || ||||| || |||| ||||||
Sbjct 6351467 AAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGGCTACAACACGTTC 6351415
Score = 84.2 bits (92), Expect = 2e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421
||||| || || || | ||| ||||||||||||||| | || ||||| |||||||||
Sbjct 6349671 ATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 6349612
Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477
|| || |||||||| | ||||| || | || |||||||| ||||| ||| ||
Sbjct 6349611 AAGCCATAGAAACAGCGGGCTTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCAC 6349556
>seq58
Length=10378366
Score = 91.5 bits (100), Expect = 2e-13
Identities = 317/490 (65%), Gaps = 26/490 (5%)
Strand=Plus/Plus
Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATAT--TGAAG 93191
|||||| ||||| | ||| || | ||| | || |||||| || || ||||| ||| |
Sbjct 1968839 TCATTGGAAAATGTGAGACCAGGCATCAGCCGTCATTTCTTAAGTCAGAATATATTGATG 1968898
Query 93192 CAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAA 93251
||||| ||||||||| || || ||||||| ||||| || ||| | | || ||
Sbjct 1968899 CAAAAGAACCAGAAAAGAAGATTTCTTCCACATTAGCAAAGGCTACATCATGCTCTCCAC 1968958
Query 93252 AATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAG 93311
|| | | ||| | |||| || || |||| | ||| ||||| | |||||
Sbjct 1968959 AAATAG-------ACTTTTTATCCTGATT----CCAAATCTGTTTTCTTCTTCACACAAG 1969007
Query 93312 GTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTAT 93371
| | |||| | | || || | | ||| || | |||| | || ||||
Sbjct 1969008 GCATCATTTCAGTGCCATTGAAGATAAATTCTTTTTCTTTGGAATTTT-TA---ATGTGA 1969063
Query 93372 CGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGA 93431
| || | | | || ||| ||||||| | || | || |||||||||||||| ||||
Sbjct 1969064 CAATAAGGAAACTGTATATTACAGAATGTATTTTTCCTATGGCAATTTGGAATCCATAGA 1969123
Query 93432 AACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGA 93491
|||| ||||| || || || | |||||| |||| || || | ||||||| |
Sbjct 1969124 AACAGTGGGCTTCTGTAATTTGAATTTCTTGGCTAAATTGCTTCACCAATTTTTCATGTA 1969183
Query 93492 CTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCAT 93551
||| ||||| |||| |||||||| | ||| |||||||| | |||| |||
Sbjct 1969184 TTATGCCATCACCTGCT-----AAAAGCCAGAACATGTGCTATAAAATCTCTCTCCTCAA 1969238
Query 93552 CTTTAAGCTTATCCCAATCGGATAGATCTT--TTGAAAGATCGACTTCTTCGACAGTCCA 93609
|| || |||||| || | || || | ||||||| ||||| | || |||||
Sbjct 1969239 GCTTCAGGGCTTCCCAA--GGTTGAATGTTCCTGAAAAGATCTACTTCCTTAACTGTCCA 1969296
Query 93610 AAACGATGCT 93619
||| || |||
Sbjct 1969297 AAAGGAAGCT 1969306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556773908832920
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