Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq536 158 1e-33 seq260 147 2e-30 seq59 116 4e-21 seq64 109 6e-19 seq58 91.5 2e-13 >seq536 Length=337149 Score = 158 bits (174), Expect = 1e-33 Identities = 499/770 (65%), Gaps = 30/770 (4%) Strand=Plus/Plus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 ||||| || |||||||| |||||||| ||||||| |||||||| || | || Sbjct 201912 CTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATTAGCTTC 201971 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 |||| | || || || | ||| || | || || | ||| | | | ||||| Sbjct 201972 TCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGCATTGATAATTGTTTCT 202031 Query 93044 ATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103 ||||||| | || |||||| || | | | ||| ||| | ||| |||||||| Sbjct 202032 TTTACTCTCTGCTCTGATGGTTTGTGAAGCAGGTGTTTGAGCATCAGGCAGGCAAAGTCA 202091 Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGGTAACAG 93162 |||||||| || |||| || || || | ||||| ||||| | || || | ||| Sbjct 202092 CAGTGTAAACCCTCATCTC-TGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAG 202150 Query 93163 TCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCAC 93222 |||||||||||||||||| ||||| || || | |||| Sbjct 202151 TCCTCGTTTCTTGAGCCA----------------------GAAAAGAAGATTCTGTCCAT 202188 Query 93223 GGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAA 93282 || ||||| || |||| |||||| || | | || || | ||| | | || Sbjct 202189 AGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCAAATGCAA 202248 Query 93283 AGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 ||||| |||||| ||||| | |||||| | |||||| | || || || || | || Sbjct 202249 GGCCCAT--GGCTTTCTTCTTCACACAAGGCATTGTTTCAGTGGCATTGAAGAGAAATTC 202306 Query 93343 TCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGAC 93402 | || | | ||| || || || || || | ||| ||||||||||||||| | Sbjct 202307 CCTTTCTTTGAAGTCTTTAATATAAGTGTCAATAAGAAGACTATACATTTCAGAATGTAT 202366 Query 93403 ATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || ||||| ||||||||||| || ||||||| | ||||| || || || |||||||| Sbjct 202367 GTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAACTTCTTG 202426 Query 93463 AGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAA 93522 |||| ||| || | ||| || || ||||| | ||| ||| ||| | ||||||| Sbjct 202427 GCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCACCTGCCGCAGAGAAAGCCAG 202486 Query 93523 TATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATAGATCTT 93581 || || |||||||| || || ||| || || ||||| | | || | || Sbjct 202487 AATGTG-GATATAAAATATTGTTCCTCAGGCTTCAGGGCTTCCCAGTGCTGA-ATGTC-C 202543 Query 93582 TTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCC 93641 || |||| | || || || | |||||||| || || || ||||| || |||| | || Sbjct 202544 CTGGAAGAGCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACACATCTGCC 202603 Query 93642 ATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCT 93691 || | || | || || ||||| ||||| || || | ||| | ||| Sbjct 202604 GGATACCATGGTGTTCCATAGGAAAGATGACCAAGCGGTGGGGGCTCTCT 202653 >seq260 Length=2306558 Score = 147 bits (162), Expect = 2e-30 Identities = 432/658 (66%), Gaps = 11/658 (2%) Strand=Plus/Plus Query 93035 AAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC 93094 || |||||| ||||||| | |||||| |||| | | ||| |||| | ||| Sbjct 2180227 AATATTTCTTTTACTCTCTGCTCCAATGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAA 2180286 Query 93095 GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACC 93153 ||| |||| | ||||||| || |||| || || || | || || ||| ||| || Sbjct 2180287 GCAGAGTCATAAAGTAAACCCTCATCTC-TGCTAATAAGTTCACTG--GAAACTTAGGCC 2180343 Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTAT 93213 || | || ||| ||||||||| | | |||||||| ||||| | || | || || | Sbjct 2180344 AGGCATCAATCCCTGTTTCTTGAACTAGAATATTGATTCAAAAGAAACATAGAAGAAGTT 2180403 Query 93214 ACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGAT 93273 |||||||| || |||| || |||| || ||| | | || || | || Sbjct 2180404 TCCTTCCACAGCCACAAAGGCTACAACACATTCTCTGTAGGTAGCTTCTTTGTCCCCAAT 2180463 Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 ||| | || || ||| ||||||||||| | | |||| | |||||| || || || || Sbjct 2180464 CCAATGCAAGACCTAATTTGCTTTTTTCTTTACATAAGGCATTGTTTCAATGGCATTGAA 2180523 Query 93334 TAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTC 93393 || | || | || | ||||| | || || || || | ||| ||||||||| Sbjct 2180524 GAGAAATTCCCTTTCTTTGAAATCT----TTTAAGTGTCAATAAGGAGACTATACATTTC 2180579 Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453 | |||| | || || || ||||||||||| | |||||||| | |||| || || || Sbjct 2180580 ACAATGTAGTTTTTC-ATGGCAATTTGGAAGTCATAGAAACAGTGAACTTCTGTAATTTG 2180638 Query 93454 CACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513 ||||| || |||| ||| || | ||||||||| ||||| ||||| ||||||||| Sbjct 2180639 AACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAA 2180698 Query 93514 aaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGG 93572 ||| || ||||| ||||||| | || ||| ||| || ||| | | | | Sbjct 2180699 GAAATTCATAATATGAGACATAAAATATCATTCCTCAGATTTCAGGGCTTCCTAGTGCAG 2180758 Query 93573 ATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGT 93632 | | || || |||| | | || || | ||| |||| || |||| || || || Sbjct 2180759 A-ATGTCCTTGGAAATAGCCACCTCCCCATATGTCAAAAAGGAACCTTCAGCCTTCTTAG 2180817 Query 93633 ACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATC 93690 | || | ||| || || || ||| || ||||| | |||||| | | |||||| || Sbjct 2180818 AAATCTGCCAAATATCATGGTATCTGATAGGAAAGAAGACAAAGCAGTGAGGGTTCTC 2180875 >seq59 Length=10161055 Score = 116 bits (128), Expect = 4e-21 Identities = 405/624 (65%), Gaps = 11/624 (2%) Strand=Plus/Minus Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||| | ||||||| | || |||| | |||| | || | | |||| ||| ||| Sbjct 9903024 ATTTATTTTACTCTCTGCTCTGATGGTGTGTGTAGCAGGTATTCGGACATCGGGCA-GCA 9902966 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGG 93156 || || | |||||||| ||||||| || | || | |||||| ||||| | || || Sbjct 9902965 AATTCAGAGTGTAAACCCTCGTCTC-TGCTGATAAGTTCATTGGAAAATGTGAGGCCAGG 9902907 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | |||| || | ||||||||||||||| ||||| |||||||| || || | Sbjct 9902906 CATCAGTTCTTAT-----GAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATTTC 9902852 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 | || | || || | |||| ||||| | | || || | |||| Sbjct 9902851 TCCCGTAGTGGCCAAGACTACAACACGTTTTCTGTAGGTAGCTTCTTTGTCCCCAGTCCA 9902792 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 || || || || ||||| ||||| | ||||| | |||| || || | | || Sbjct 9902791 ACACAAGGCACAGTCTGCTTTCTTCTTCACCCAAGGCATCATTTCAATGGCACTGGAGAG 9902732 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | || | || | |||| | ||||| | || || | ||| ||| |||||||| Sbjct 9902731 AAATTCCCTGTCTTAGGAATTTTTAATGTAAATGTCAATAAGGAGACCATATATTTCAGA 9902672 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||| | || ||||| |||| |||||| || ||||||| | ||||| | || || || Sbjct 9902671 ATGTATGTTTTCCATAGCAACTTGGAAGCCACAGAAACAGCCGGCTTCTATAATTTGAAC 9902612 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 ||||| ||||| || || ||||||||| | |||| ||||| |||| |||| || Sbjct 9902611 CTCTTGGCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCACGTGCTTCAAAGAA 9902552 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATA 93575 ||| | | ||| |||||||| | || ||| || || | || | | || Sbjct 9902551 AGCTAGAACATGTGATATAAAATATCATTCCTCAGGCTTCAGGGCCTGCCGGTGCTGACT 9902492 Query 93576 GATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA 93635 | || || |||||||| || || || | ||||| || || || || ||||| || |||| Sbjct 9902491 G-TCCTTGGAAAGATCCACCTCCTCCGCTGTCCAGAAGGACGCCTCGGCTTTCTTATACA 9902433 Query 93636 TATCCCATATGTCTTGAT-ATTGA 93658 | | ||| || || || | ||||| Sbjct 9902432 TTTGCCAAATATCATGGTGATTGA 9902409 >seq64 Length=9676502 Score = 109 bits (120), Expect = 6e-19 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | || || | ||||||||||||||||||||| |||||||||||| Sbjct 6351527 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGAAGCA 6351468 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||||||||| || || || ||||| || ||||| || |||| |||||| Sbjct 6351467 AAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGGCTACAACACGTTC 6351415 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || || || | ||| ||||||||||||||| | || ||||| ||||||||| Sbjct 6349671 ATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 6349612 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477 || || |||||||| | ||||| || | || |||||||| ||||| ||| || Sbjct 6349611 AAGCCATAGAAACAGCGGGCTTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCAC 6349556 >seq58 Length=10378366 Score = 91.5 bits (100), Expect = 2e-13 Identities = 317/490 (65%), Gaps = 26/490 (5%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATAT--TGAAG 93191 |||||| ||||| | ||| || | ||| | || |||||| || || ||||| ||| | Sbjct 1968839 TCATTGGAAAATGTGAGACCAGGCATCAGCCGTCATTTCTTAAGTCAGAATATATTGATG 1968898 Query 93192 CAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAA 93251 ||||| ||||||||| || || ||||||| ||||| || ||| | | || || Sbjct 1968899 CAAAAGAACCAGAAAAGAAGATTTCTTCCACATTAGCAAAGGCTACATCATGCTCTCCAC 1968958 Query 93252 AATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAG 93311 || | | ||| | |||| || || |||| | ||| ||||| | ||||| Sbjct 1968959 AAATAG-------ACTTTTTATCCTGATT----CCAAATCTGTTTTCTTCTTCACACAAG 1969007 Query 93312 GTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTAT 93371 | | |||| | | || || | | ||| || | |||| | || |||| Sbjct 1969008 GCATCATTTCAGTGCCATTGAAGATAAATTCTTTTTCTTTGGAATTTT-TA---ATGTGA 1969063 Query 93372 CGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGA 93431 | || | | | || ||| ||||||| | || | || |||||||||||||| |||| Sbjct 1969064 CAATAAGGAAACTGTATATTACAGAATGTATTTTTCCTATGGCAATTTGGAATCCATAGA 1969123 Query 93432 AACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGA 93491 |||| ||||| || || || | |||||| |||| || || | ||||||| | Sbjct 1969124 AACAGTGGGCTTCTGTAATTTGAATTTCTTGGCTAAATTGCTTCACCAATTTTTCATGTA 1969183 Query 93492 CTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCAT 93551 ||| ||||| |||| |||||||| | ||| |||||||| | |||| ||| Sbjct 1969184 TTATGCCATCACCTGCT-----AAAAGCCAGAACATGTGCTATAAAATCTCTCTCCTCAA 1969238 Query 93552 CTTTAAGCTTATCCCAATCGGATAGATCTT--TTGAAAGATCGACTTCTTCGACAGTCCA 93609 || || |||||| || | || || | ||||||| ||||| | || ||||| Sbjct 1969239 GCTTCAGGGCTTCCCAA--GGTTGAATGTTCCTGAAAAGATCTACTTCCTTAACTGTCCA 1969296 Query 93610 AAACGATGCT 93619 ||| || ||| Sbjct 1969297 AAAGGAAGCT 1969306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556773908832920