Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq14 156 4e-33
seq126 147 2e-30
seq13 138 9e-28
seq128 87.8 2e-12
seq90 87.8 2e-12
seq26 84.2 2e-11
seq215 82.4 6e-11
>seq14
Length=21378024
Score = 156 bits (172), Expect = 4e-33
Identities = 172/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
||||||| || ||||| || || | || || || || |||| || || || || |||
Sbjct 6329729 AGATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCA 6329788
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
|| ||| | || || ||||| |||||||||||||||||||| || ||||| ||||
Sbjct 6329789 GTGACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATC 6329848
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || ||||| |||||||| ||||||||| | |||||| |||||| |||| |||||||
Sbjct 6329849 AGCAGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGATTACA 6329908
Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|||| || ||||| |||||| | || || || | || |||| || ||
Sbjct 6329909 ACATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGG 6329957
>seq126
Length=5838822
Score = 147 bits (162), Expect = 2e-30
Identities = 170/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
||||||| || ||||| || || | || || || || |||| || || || || |||
Sbjct 680736 AGATGCAGATCTTTGTGAAGACCATGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCA 680795
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
|| ||| | || || ||||| |||||||||||||||||||| || ||||| ||||
Sbjct 680796 GTGACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATC 680855
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || ||||| |||||||| ||||||||| | |||||| || ||| |||| |||||||
Sbjct 680856 AGCAGCGTCTAATATTTGCAGGCAAACAGCTGGAGGATGGCCACACTCTCTCAGATTACA 680915
Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
||| || ||||| |||||| | || || || | || |||| || ||
Sbjct 680916 GCATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGG 680964
>seq13
Length=21495731
Score = 138 bits (152), Expect = 9e-28
Identities = 150/199 (75%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
|||| || || ||||| || || | | || || || |||| || || || || |||
Sbjct 9191700 AGATTCAGATCTTTGTGAAGACCCTGATAGGCAAGACCATCACCCTCGAGGTCGAGCCCA 9191759
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
|| ||| | || || ||||| |||| |||||||| ||||||| || ||||| ||||
Sbjct 9191760 GTGACACCATCGAGAATGTCAAAGCAAAATTTCAAGACCAGGAGGGCATCCCACCTGATC 9191819
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || | ||| |||||||| || |||||| |||||||| ||||||| |||| |||||||
Sbjct 9191820 AGCAGCATCTGATATTTGCAGGTAAACAGCTAGAGGATGACCGCACTCTCTCAGATTACA 9191879
Query 22397 ACATTCAAAAAGAATCCAC 22415
|||| || ||||| |||||
Sbjct 9191880 ACATCCAGAAAGAGTCCAC 9191898
>seq128
Length=5608787
Score = 87.8 bits (96), Expect = 2e-12
Identities = 72/88 (82%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380
|| || ||||| ||||| || ||||| |||||||| ||||||||| | |||||| ||||
Sbjct 2708367 GGCATCCCACCTGATCAGCAGCGTCTGATATTTGCAGGCAAACAGCTGGAGGATGGCCGC 2708308
Query 22381 ACCGTCTCCGATTACAACATTCAAAAAG 22408
|| |||| ||||||||||| || ||||
Sbjct 2708307 ACTCTCTCAGATTACAACATCCAGAAAG 2708280
>seq90
Length=7592057
Score = 87.8 bits (96), Expect = 2e-12
Identities = 129/183 (70%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 22264 GAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGT 22323
|| ||||| ||| || ||| | || || |||| || || ||||||||||||||
Sbjct 463965 GAGGTGGAGCCCAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGC 464024
Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACC 22383
|| || || || || || | || || |||||||| || ||| | || ||| ||||||
Sbjct 464025 ATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACC 464084
Query 22384 GTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGA 22443
| || || ||||| || || || |||||||| | ||||| || |||| ||| | ||
Sbjct 464085 CTGTCTGACTACAATATCCAGAAGGAATCCACTCTGCATTTGGTCCTGCGCTTGAGGGGG 464144
Query 22444 GGT 22446
|||
Sbjct 464145 GGT 464147
>seq26
Length=15501076
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/138 (75%), Gaps = 7/138 (5%)
Strand=Plus/Plus
Query 22292 ATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATAT 22351
|| ||||| |||||||||||||||||||| || ||| | || || || || || ||||
Sbjct 5947995 ATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCA-CAGACCAGCAGCGCCTGATAT 5948053
Query 22352 TTGCCGGCAAACAGTTAGAGGA--TCACCGCACCGTCTCCGATTACAACATTCAAAAAGA 22409
||| ||||||||| | ||||| | | |||| |||| ||||||||||| |||||
Sbjct 5948054 TTGTGGGCAAACAGCTGGAGGATTTGGCTGCACTCTCTCAGATTACAACAT----AAAGA 5948109
Query 22410 ATCCACCATACATTTAGT 22427
||| || | || || ||
Sbjct 5948110 GTCCTCCCTGCACTTGGT 5948127
>seq215
Length=3126962
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/208 (69%), Gaps = 5/208 (2%)
Strand=Plus/Plus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
||||||| || ||||| || ||| | || | ||| | || | ||| || || |||
Sbjct 2693080 AGATGCAGATCTTTGTGAAGACTCTGACAGTTAAGATCATCTTCCATGAGGTTGAGCCCA 2693139
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
|| | | | || || ||||| ||||||||||| ||||| | ||| || || |
Sbjct 2693140 GTGACAGCTTCGAGAATGTCAAAGCCAAAATTCAAGAGAAGGACAGCATTATGCCTGACC 2693199
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
|||| || ||||||| ||||||||| | |||||| |||| |||| ||||||
Sbjct 2693200 AACAGTGTGAGATATTTGTGGGCAAACAGCTGGAGGAT---GGCAC--TCTCACATTACA 2693254
Query 22397 ACATTCAAAAAGAATCCACCATACATTT 22424
|||| || ||||| |||||| | || ||
Sbjct 2693255 ACATCCAGAAAGAGTCCACCCTGCACTT 2693282
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419664144024895
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |