Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq14 156 4e-33 seq126 147 2e-30 seq13 138 9e-28 seq128 87.8 2e-12 seq90 87.8 2e-12 seq26 84.2 2e-11 seq215 82.4 6e-11 >seq14 Length=21378024 Score = 156 bits (172), Expect = 4e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||| || || || || ||| Sbjct 6329729 AGATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCA 6329788 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || || ||||| |||||||||||||||||||| || ||||| |||| Sbjct 6329789 GTGACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATC 6329848 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| |||||||| ||||||||| | |||||| |||||| |||| ||||||| Sbjct 6329849 AGCAGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGATTACA 6329908 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||| || ||||| |||||| | || || || | || |||| || || Sbjct 6329909 ACATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGG 6329957 >seq126 Length=5838822 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||| || || || || ||| Sbjct 680736 AGATGCAGATCTTTGTGAAGACCATGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCA 680795 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || || ||||| |||||||||||||||||||| || ||||| |||| Sbjct 680796 GTGACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATC 680855 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| |||||||| ||||||||| | |||||| || ||| |||| ||||||| Sbjct 680856 AGCAGCGTCTAATATTTGCAGGCAAACAGCTGGAGGATGGCCACACTCTCTCAGATTACA 680915 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| || ||||| |||||| | || || || | || |||| || || Sbjct 680916 GCATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGG 680964 >seq13 Length=21495731 Score = 138 bits (152), Expect = 9e-28 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||| || || ||||| || || | | || || || |||| || || || || ||| Sbjct 9191700 AGATTCAGATCTTTGTGAAGACCCTGATAGGCAAGACCATCACCCTCGAGGTCGAGCCCA 9191759 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || || ||||| |||| |||||||| ||||||| || ||||| |||| Sbjct 9191760 GTGACACCATCGAGAATGTCAAAGCAAAATTTCAAGACCAGGAGGGCATCCCACCTGATC 9191819 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||| |||||||| || |||||| |||||||| ||||||| |||| ||||||| Sbjct 9191820 AGCAGCATCTGATATTTGCAGGTAAACAGCTAGAGGATGACCGCACTCTCTCAGATTACA 9191879 Query 22397 ACATTCAAAAAGAATCCAC 22415 |||| || ||||| ||||| Sbjct 9191880 ACATCCAGAAAGAGTCCAC 9191898 >seq128 Length=5608787 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 || || ||||| ||||| || ||||| |||||||| ||||||||| | |||||| |||| Sbjct 2708367 GGCATCCCACCTGATCAGCAGCGTCTGATATTTGCAGGCAAACAGCTGGAGGATGGCCGC 2708308 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAG 22408 || |||| ||||||||||| || |||| Sbjct 2708307 ACTCTCTCAGATTACAACATCCAGAAAG 2708280 >seq90 Length=7592057 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 22264 GAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGT 22323 || ||||| ||| || ||| | || || |||| || || |||||||||||||| Sbjct 463965 GAGGTGGAGCCCAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGC 464024 Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACC 22383 || || || || || || | || || |||||||| || ||| | || ||| |||||| Sbjct 464025 ATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACC 464084 Query 22384 GTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGA 22443 | || || ||||| || || || |||||||| | ||||| || |||| ||| | || Sbjct 464085 CTGTCTGACTACAATATCCAGAAGGAATCCACTCTGCATTTGGTCCTGCGCTTGAGGGGG 464144 Query 22444 GGT 22446 ||| Sbjct 464145 GGT 464147 >seq26 Length=15501076 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 7/138 (5%) Strand=Plus/Plus Query 22292 ATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATAT 22351 || ||||| |||||||||||||||||||| || ||| | || || || || || |||| Sbjct 5947995 ATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCA-CAGACCAGCAGCGCCTGATAT 5948053 Query 22352 TTGCCGGCAAACAGTTAGAGGA--TCACCGCACCGTCTCCGATTACAACATTCAAAAAGA 22409 ||| ||||||||| | ||||| | | |||| |||| ||||||||||| ||||| Sbjct 5948054 TTGTGGGCAAACAGCTGGAGGATTTGGCTGCACTCTCTCAGATTACAACAT----AAAGA 5948109 Query 22410 ATCCACCATACATTTAGT 22427 ||| || | || || || Sbjct 5948110 GTCCTCCCTGCACTTGGT 5948127 >seq215 Length=3126962 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/208 (69%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || ||| | || | ||| | || | ||| || || ||| Sbjct 2693080 AGATGCAGATCTTTGTGAAGACTCTGACAGTTAAGATCATCTTCCATGAGGTTGAGCCCA 2693139 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || | | | || || ||||| ||||||||||| ||||| | ||| || || | Sbjct 2693140 GTGACAGCTTCGAGAATGTCAAAGCCAAAATTCAAGAGAAGGACAGCATTATGCCTGACC 2693199 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 |||| || ||||||| ||||||||| | |||||| |||| |||| |||||| Sbjct 2693200 AACAGTGTGAGATATTTGTGGGCAAACAGCTGGAGGAT---GGCAC--TCTCACATTACA 2693254 Query 22397 ACATTCAAAAAGAATCCACCATACATTT 22424 |||| || ||||| |||||| | || || Sbjct 2693255 ACATCCAGAAAGAGTCCACCCTGCACTT 2693282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419664144024895