Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq14 170 4e-37
seq126 158 2e-33
seq13 143 5e-29
seq118 125 1e-23
seq90 123 5e-23
seq1607 105 1e-17
seq145 102 2e-16
seq353 100 5e-16
seq739 93.3 8e-14
seq26 91.5 3e-13
seq178 89.7 9e-13
seq215 87.8 3e-12
seq279 86.0 1e-11
seq25 86.0 1e-11
seq173 84.2 4e-11
seq128 84.2 4e-11
>seq14
Length=21378024
Score = 170 bits (188), Expect = 4e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | |||||||| || ||||||||||| |||||||| ||||| |||
Sbjct 6329957 CCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAG 6329898
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | ||| || || || ||||| || | || || || |||||
Sbjct 6329897 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGG 6329838
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||||||||| || || ||||| |||||||||||| | || ||
Sbjct 6329837 ATGCCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACC 6329778
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || ||||| |||||||| || || ||||||||
Sbjct 6329777 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731
>seq126
Length=5838822
Score = 158 bits (174), Expect = 2e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | |||||||| || ||||||||||| |||||| | ||||| |||
Sbjct 680964 CCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAG 680905
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || ||||| || | ||| || || || ||||| || | || || || |||||
Sbjct 680904 AGAGTGTGGCCATCCTCCAGCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGG 680845
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||||||||| || || ||||| |||||||||||| | || ||
Sbjct 680844 ATGCCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACC 680785
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || ||||| | |||||| || || ||||||||
Sbjct 680784 TCGAGGGTGATGGTCTTGCCCGTCATGGTCTTCACAAAGATCTGCAT 680738
>seq13
Length=21495731
Score = 143 bits (158), Expect = 5e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
||||||| ||| ||||||||||| |||||||| ||||| ||||| || | |||| |||
Sbjct 9191910 ACCAAGTATAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTCT 9191851
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| ||| || || || ||||| || || || || ||||| ||||| |||| |||||||
Sbjct 9191850 AGCTGTTTACCTGCAAATATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGTCTTGA 9191791
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
| ||||| ||||| |||||||||||| | || || || | ||||||||| ||
Sbjct 9191790 AATTTTGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTG 9191731
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| || || ||||| ||
Sbjct 9191730 CCTATCAGGGTCTTCACAAAGATCTGAAT 9191702
>seq118
Length=6029945
Score = 125 bits (138), Expect = 1e-23
Identities = 154/207 (74%), Gaps = 4/207 (2%)
Strand=Plus/Plus
Query 68262 AGCGTGGACTCTTTTTGGATGTTATAAT--CGGAGAGTGTCCTCCCATCTTCTAACTGCT 68319
|| ||||||||||| ||||| || ||| | || || || | |||||||| | |||||
Sbjct 3917703 AGGGTGGACTCTTTCTGGATATTGCAATATCAGAAAGAGTGCAGCCATCTTCCAGCTGCT 3917762
Query 68320 TCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTG 68379
| || || || ||||| || | ||||| || ||||||||||| || || | |||| |
Sbjct 3917763 TGCCTGCAAAGATGAGCCTCTACTGGTCAGGAGGAATGCCTTCTTTATCCTTGTTCTTAG 3917822
Query 68380 CCTTGACGGCCTCGATGGTGTCTGCTGA-TTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
|||| || ||| |||||||| |||| || | ||||||||||| || || || ||
Sbjct 3917823 CCTTCACATTCTCAATGGTGTC-ACTGAGCTCCATCTCCAAGGTGATAGTCTTGCCAGTC 3917881
Query 68439 AGGGTCTTGACGAATATCTGCATTATG 68465
|||||||| || || ||||||||| ||
Sbjct 3917882 AGGGTCTTCACAAAGATCTGCATTTTG 3917908
>seq90
Length=7592057
Score = 123 bits (136), Expect = 5e-23
Identities = 121/156 (78%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 68246 GCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCC 68305
||||| ||||| || || ||||| || || ||||| || || || || || || | |||
Sbjct 464135 GCGCAGGACCAAATGCAGAGTGGATTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCC 464076
Query 68306 ATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTT 68365
|||||| | |||||| ||||| || || || || || ||||| || || ||||| |||||
Sbjct 464075 ATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTT 464016
Query 68366 GTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTC 68401
|||||| ||||| |||||||| ||| ||||||||
Sbjct 464015 GTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTC 463980
>seq1607
Length=19272
Score = 105 bits (116), Expect = 1e-17
Identities = 160/227 (70%), Gaps = 3/227 (1%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| | | | ||| |||||||| || ||||| || || |||||| | || || |||
Sbjct 6405 CCTCCCCACAAGTGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGCTGTAGTCAGAG 6346
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||||| | || || || || || | || || |||| || ||
Sbjct 6345 AGGGTGCAAACATCTTCCAGAATTTTGCCAGCAAAGATCAACCTGTGCAGGTCAGGGGGG 6286
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||| ||||||| ||| |||||||||||||| ||| ||| ||| | || ||
Sbjct 6285 ATGTCTTCCTT---TTGGATCTTTGCCTTGACATTCTCAGTGGAGTCACTGGGCTCCACC 6229
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || ||||| |||||||| || || ||||||||
Sbjct 6228 TCTAGGGTGATGGTCTTACCCGTCAGGGTCTTCACCAAGATCTGCAT 6182
>seq145
Length=5050978
Score = 102 bits (112), Expect = 2e-16
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
||||||| || ||||| || || |||||||| || || |||| || |||||||||
Sbjct 972511 ACCAAGTACAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAAGGTGTGCCCATCTTCC 972570
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| ||| || || || || | || || || || ||||| ||| ||||||||| |||
Sbjct 972571 AGCTGTTTGCCAATAAAGATCAACCTCTGCTGCTCAGGTGGGATGTCTTCCTTGTATTGG 972630
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
|| ||||||||||| ||| |||||||| | || || |||| |||||| | ||
Sbjct 972631 ATATTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGATCTTG 972690
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||| ||| ||||||||
Sbjct 972691 CCTCCCAAGGTCTTTGTGAAGATCTGCAT 972719
>seq353
Length=1223491
Score = 100 bits (110), Expect = 5e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || ||||||||||| ||||| || || || || || || | ||||||||
Sbjct 241199 ACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCAGAAAGAGTACGGCCATCTTCC 241258
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| |||||| || || || ||||| || || ||||| || ||||||||||| || || ||
Sbjct 241259 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGG 241318
Query 68373 ATCTT 68377
|||||
Sbjct 241319 ATCTT 241323
>seq739
Length=148672
Score = 93.3 bits (102), Expect = 8e-14
Identities = 157/227 (69%), Gaps = 3/227 (1%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| | | ||||| |||||||| || ||||| || || |||||| | || || |||
Sbjct 36643 CCTCCTCACAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGCTGTAGTCAGAG 36584
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||| |||| | || || || | || | || || | | || ||
Sbjct 36583 AGGGTGCACCCCTCTTTCAGAATTTTGCCAGCATAGATCAACCTGTGCCGATTAGGGGGG 36524
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||| ||||||| ||| |||||||||||||| ||| ||||||| | || ||
Sbjct 36523 ATGTCTTCCTT---TTGGATCTTTGCCTTGACATTCTCAGTGGTGTCACTGGGCTCCACC 36467
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || || || |||||||| | || ||||||||
Sbjct 36466 TCTAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATCAAGATCTGCAT 36420
>seq26
Length=15501076
Score = 91.5 bits (100), Expect = 3e-13
Identities = 143/202 (71%), Gaps = 7/202 (3%)
Strand=Plus/Minus
Query 68242 GAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCC 68301
||||| | | |||||||| || | ||||||||| ||||| ||||| ||||| || |
Sbjct 5948138 GAAGGTGAAGCACCAAGTGCAGGGAGGACTCTTT----ATGTTGTAATCTGAGAGAGTGC 5948083
Query 68302 TCCCA--TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCC 68359
||| || || | ||| || || | ||||| || | || ||||| | ||| |||||
Sbjct 5948082 AGCCAAATCCTCCAGCTGTTTGCCCACAAATATCAGGCGCTGCTGGTCTG-TGGGATGCC 5948024
Query 68360 TTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAA 68419
|||||||||||||| || || ||||| ||| ||||||| | || || | |
Sbjct 5948023 CTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAGTGGTGTCATTGGGCTCGACCTTGAG 5947964
Query 68420 GGTGATGGTTTTTCCCGTGAGG 68441
|||||||| || ||||| |||
Sbjct 5947963 GGTGATGGCCTTGCCCGTCAGG 5947942
>seq178
Length=4226165
Score = 89.7 bits (98), Expect = 9e-13
Identities = 145/209 (69%), Gaps = 16/209 (8%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || || ||||||| |||| || ||||| ||||| || | ||||| ||
Sbjct 1706332 ACCAGGTGCAGTATGAACTCTTT--GGATATTGTAATCTGAGAGAGTGCAGCCATCCTCC 1706389
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| ||| || || || ||||| || | ||| || |||||||||||||||||
Sbjct 1706390 AGCTGTTTGCCCGCAAATATCAGACATTGCTG----------ATGCCTTCCTTGTCTTGC 1706439
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
|| || || ||||| ||| ||||||| ||| || | | ||||||||| ||
Sbjct 1706440 ATTTTGGCTTTGACATTCTCAGTGGTGTC----ACTTCGACCTTGAGGGTGATGGTCTTG 1706495
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||| | | ||| || || || ||||||||
Sbjct 1706496 CCCATCATGGTTTTCACAAAGATCTGCAT 1706524
>seq215
Length=3126962
Score = 87.8 bits (96), Expect = 3e-12
Identities = 143/206 (69%), Gaps = 5/206 (2%)
Strand=Plus/Minus
Query 68256 AAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAAC 68315
||||| || ||||||||||| |||||||| |||| ||||||| ||||| || | |
Sbjct 2693282 AAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATGTGAGAGTG-----CCATCCTCCAGC 2693228
Query 68316 TGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATC 68375
|| || || | ||||| | |||||||| || ||||| ||||| ||||||||
Sbjct 2693227 TGTTTGCCCACAAATATCTCACACTGTTGGTCAGGCATAATGCTGTCCTTCTCTTGAATT 2693168
Query 68376 TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCC 68435
|| || ||||| ||||| | |||| | || || || | |||| | || |
Sbjct 2693167 TTGGCTTTGACATTCTCGAAGCTGTCACTGGGCTCAACCTCATGGAAGATGATCTTAACT 2693108
Query 68436 GTGAGGGTCTTGACGAATATCTGCAT 68461
|| || ||||| || || ||||||||
Sbjct 2693107 GTCAGAGTCTTCACAAAGATCTGCAT 2693082
>seq279
Length=2078848
Score = 86.0 bits (94), Expect = 1e-11
Identities = 116/159 (73%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 68268 GACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCG 68327
|||||||| ||||||||||| || || || | | |||||||| | |||||| || ||
Sbjct 1038307 GACTCTTTCTGGATGTTATAGTCAGAAAGAATGCAGCCATCTTCCAGCTGCTTGCCTGCA 1038366
Query 68328 AATATGAGTCTTTGTTGGTC-GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386
|| ||||| || || ||||| | | | ||| |||| ||| || || ||||| ||||| |
Sbjct 1038367 AAGATGAGCCTCTGCTGGTCAGAGGGAAATACCTT-CTTATCCTGGATCTTGGCCTTCAT 1038425
Query 68387 GGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGAT 68425
|| |||||||| | |||||||||| | ||||
Sbjct 1038426 ATTTTCAATGGTGTCACTGGGCTCTACTTCCAGGATGAT 1038464
>seq25
Length=15668443
Score = 86.0 bits (94), Expect = 1e-11
Identities = 132/187 (71%), Gaps = 1/187 (1%)
Strand=Plus/Minus
Query 68273 TTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATAT 68332
||| |||||| | | ||| |||| || | |||||| | | ||| || || || |||||
Sbjct 2044001 TTTCTGGATGCTGTGATCTGAGAAAGTGCAGCCATCTCC-AGCTGTTTGCCTGCAAATAT 2043943
Query 68333 GAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTC 68392
|| | | |||||||| || ||| | |||||||||||||| | || | | | |||
Sbjct 2043942 CAGACGCCGCTGGTCGGGGGGGATGTCCTCCTTGTCTTGAATATGGGCTTGGCCATTCTC 2043883
Query 68393 GATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|| |||||| | || |||| | ||||||| | || |||| |||||||| || ||
Sbjct 2043882 GAAGGTGTCACTGGGCTCAACTTGGAGGGTGATGCTCTTGCCCGCCAGGGTCTTCACAAA 2043823
Query 68453 TATCTGC 68459
||||||
Sbjct 2043822 GATCTGC 2043816
>seq173
Length=4295205
Score = 84.2 bits (92), Expect = 4e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 68356 TGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTT 68415
|||||||||||||||| | |||||||||||| ||| |||||||| | || || |
Sbjct 530539 TGCCTTCCTTGTCTTGGACCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCT 530480
Query 68416 CCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464
||| |||||||| ||||| || | ||| || || || ||| |||||||
Sbjct 530479 CCACAGTGATGGTCTTTCCAGTTAAGGTTTTCACAAAGATCGGCATTAT 530431
>seq128
Length=5608787
Score = 84.2 bits (92), Expect = 4e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417
|| |||||||||||||| || || ||||| |||||||||||| | || || ||
Sbjct 2708593 CCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCG 2708652
Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| ||||||||| || ||||| |||||||| || || ||||||||
Sbjct 2708653 AGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2708696
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921478592344760
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