Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq14 170 4e-37 seq126 158 2e-33 seq13 143 5e-29 seq118 125 1e-23 seq90 123 5e-23 seq1607 105 1e-17 seq145 102 2e-16 seq353 100 5e-16 seq739 93.3 8e-14 seq26 91.5 3e-13 seq178 89.7 9e-13 seq215 87.8 3e-12 seq279 86.0 1e-11 seq25 86.0 1e-11 seq173 84.2 4e-11 seq128 84.2 4e-11 >seq14 Length=21378024 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||||||| || ||||||||||| |||||||| ||||| ||| Sbjct 6329957 CCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAG 6329898 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||| || || || ||||| || | || || || ||||| Sbjct 6329897 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGG 6329838 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||||||||| || || ||||| |||||||||||| | || || Sbjct 6329837 ATGCCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACC 6329778 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || ||||| |||||||| || || |||||||| Sbjct 6329777 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731 >seq126 Length=5838822 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||||||| || ||||||||||| |||||| | ||||| ||| Sbjct 680964 CCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAG 680905 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || ||||| || | ||| || || || ||||| || | || || || ||||| Sbjct 680904 AGAGTGTGGCCATCCTCCAGCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGG 680845 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||||||||| || || ||||| |||||||||||| | || || Sbjct 680844 ATGCCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACC 680785 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || ||||| | |||||| || || |||||||| Sbjct 680784 TCGAGGGTGATGGTCTTGCCCGTCATGGTCTTCACAAAGATCTGCAT 680738 >seq13 Length=21495731 Score = 143 bits (158), Expect = 5e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||||| ||| ||||||||||| |||||||| ||||| ||||| || | |||| ||| Sbjct 9191910 ACCAAGTATAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTCT 9191851 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || ||||| || || || || ||||| ||||| |||| ||||||| Sbjct 9191850 AGCTGTTTACCTGCAAATATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGTCTTGA 9191791 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 | ||||| ||||| |||||||||||| | || || || | ||||||||| || Sbjct 9191790 AATTTTGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTG 9191731 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||| || Sbjct 9191730 CCTATCAGGGTCTTCACAAAGATCTGAAT 9191702 >seq118 Length=6029945 Score = 125 bits (138), Expect = 1e-23 Identities = 154/207 (74%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 68262 AGCGTGGACTCTTTTTGGATGTTATAAT--CGGAGAGTGTCCTCCCATCTTCTAACTGCT 68319 || ||||||||||| ||||| || ||| | || || || | |||||||| | ||||| Sbjct 3917703 AGGGTGGACTCTTTCTGGATATTGCAATATCAGAAAGAGTGCAGCCATCTTCCAGCTGCT 3917762 Query 68320 TCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTG 68379 | || || || ||||| || | ||||| || ||||||||||| || || | |||| | Sbjct 3917763 TGCCTGCAAAGATGAGCCTCTACTGGTCAGGAGGAATGCCTTCTTTATCCTTGTTCTTAG 3917822 Query 68380 CCTTGACGGCCTCGATGGTGTCTGCTGA-TTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 |||| || ||| |||||||| |||| || | ||||||||||| || || || || Sbjct 3917823 CCTTCACATTCTCAATGGTGTC-ACTGAGCTCCATCTCCAAGGTGATAGTCTTGCCAGTC 3917881 Query 68439 AGGGTCTTGACGAATATCTGCATTATG 68465 |||||||| || || ||||||||| || Sbjct 3917882 AGGGTCTTCACAAAGATCTGCATTTTG 3917908 >seq90 Length=7592057 Score = 123 bits (136), Expect = 5e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 68246 GCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCC 68305 ||||| ||||| || || ||||| || || ||||| || || || || || || | ||| Sbjct 464135 GCGCAGGACCAAATGCAGAGTGGATTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCC 464076 Query 68306 ATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTT 68365 |||||| | |||||| ||||| || || || || || ||||| || || ||||| ||||| Sbjct 464075 ATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTT 464016 Query 68366 GTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTC 68401 |||||| ||||| |||||||| ||| |||||||| Sbjct 464015 GTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTC 463980 >seq1607 Length=19272 Score = 105 bits (116), Expect = 1e-17 Identities = 160/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | | ||| |||||||| || ||||| || || |||||| | || || ||| Sbjct 6405 CCTCCCCACAAGTGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGCTGTAGTCAGAG 6346 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||| | || || || || || | || || |||| || || Sbjct 6345 AGGGTGCAAACATCTTCCAGAATTTTGCCAGCAAAGATCAACCTGTGCAGGTCAGGGGGG 6286 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||| ||||||| ||| |||||||||||||| ||| ||| ||| | || || Sbjct 6285 ATGTCTTCCTT---TTGGATCTTTGCCTTGACATTCTCAGTGGAGTCACTGGGCTCCACC 6229 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || ||||| |||||||| || || |||||||| Sbjct 6228 TCTAGGGTGATGGTCTTACCCGTCAGGGTCTTCACCAAGATCTGCAT 6182 >seq145 Length=5050978 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||||| || ||||| || || |||||||| || || |||| || ||||||||| Sbjct 972511 ACCAAGTACAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAAGGTGTGCCCATCTTCC 972570 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || || | || || || || ||||| ||| ||||||||| ||| Sbjct 972571 AGCTGTTTGCCAATAAAGATCAACCTCTGCTGCTCAGGTGGGATGTCTTCCTTGTATTGG 972630 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || ||||||||||| ||| |||||||| | || || |||| |||||| | || Sbjct 972631 ATATTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGATCTTG 972690 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| ||| |||||||| Sbjct 972691 CCTCCCAAGGTCTTTGTGAAGATCTGCAT 972719 >seq353 Length=1223491 Score = 100 bits (110), Expect = 5e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| ||||| || || || || || || | |||||||| Sbjct 241199 ACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCAGAAAGAGTACGGCCATCTTCC 241258 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || ||||| || || ||||| || ||||||||||| || || || Sbjct 241259 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGG 241318 Query 68373 ATCTT 68377 ||||| Sbjct 241319 ATCTT 241323 >seq739 Length=148672 Score = 93.3 bits (102), Expect = 8e-14 Identities = 157/227 (69%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | ||||| |||||||| || ||||| || || |||||| | || || ||| Sbjct 36643 CCTCCTCACAAGCGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGCTGTAGTCAGAG 36584 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||| |||| | || || || | || | || || | | || || Sbjct 36583 AGGGTGCACCCCTCTTTCAGAATTTTGCCAGCATAGATCAACCTGTGCCGATTAGGGGGG 36524 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||| ||||||| ||| |||||||||||||| ||| ||||||| | || || Sbjct 36523 ATGTCTTCCTT---TTGGATCTTTGCCTTGACATTCTCAGTGGTGTCACTGGGCTCCACC 36467 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || |||||||| | || |||||||| Sbjct 36466 TCTAGGGTGATGGTCTTGCCTGTCAGGGTCTTCATCAAGATCTGCAT 36420 >seq26 Length=15501076 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/202 (71%), Gaps = 7/202 (3%) Strand=Plus/Minus Query 68242 GAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCC 68301 ||||| | | |||||||| || | ||||||||| ||||| ||||| ||||| || | Sbjct 5948138 GAAGGTGAAGCACCAAGTGCAGGGAGGACTCTTT----ATGTTGTAATCTGAGAGAGTGC 5948083 Query 68302 TCCCA--TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCC 68359 ||| || || | ||| || || | ||||| || | || ||||| | ||| ||||| Sbjct 5948082 AGCCAAATCCTCCAGCTGTTTGCCCACAAATATCAGGCGCTGCTGGTCTG-TGGGATGCC 5948024 Query 68360 TTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAA 68419 |||||||||||||| || || ||||| ||| ||||||| | || || | | Sbjct 5948023 CTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAGTGGTGTCATTGGGCTCGACCTTGAG 5947964 Query 68420 GGTGATGGTTTTTCCCGTGAGG 68441 |||||||| || ||||| ||| Sbjct 5947963 GGTGATGGCCTTGCCCGTCAGG 5947942 >seq178 Length=4226165 Score = 89.7 bits (98), Expect = 9e-13 Identities = 145/209 (69%), Gaps = 16/209 (8%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || ||||||| |||| || ||||| ||||| || | ||||| || Sbjct 1706332 ACCAGGTGCAGTATGAACTCTTT--GGATATTGTAATCTGAGAGAGTGCAGCCATCCTCC 1706389 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || ||||| || | ||| || ||||||||||||||||| Sbjct 1706390 AGCTGTTTGCCCGCAAATATCAGACATTGCTG----------ATGCCTTCCTTGTCTTGC 1706439 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || || ||||| ||| ||||||| ||| || | | ||||||||| || Sbjct 1706440 ATTTTGGCTTTGACATTCTCAGTGGTGTC----ACTTCGACCTTGAGGGTGATGGTCTTG 1706495 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | | ||| || || || |||||||| Sbjct 1706496 CCCATCATGGTTTTCACAAAGATCTGCAT 1706524 >seq215 Length=3126962 Score = 87.8 bits (96), Expect = 3e-12 Identities = 143/206 (69%), Gaps = 5/206 (2%) Strand=Plus/Minus Query 68256 AAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAAC 68315 ||||| || ||||||||||| |||||||| |||| ||||||| ||||| || | | Sbjct 2693282 AAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATGTGAGAGTG-----CCATCCTCCAGC 2693228 Query 68316 TGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATC 68375 || || || | ||||| | |||||||| || ||||| ||||| |||||||| Sbjct 2693227 TGTTTGCCCACAAATATCTCACACTGTTGGTCAGGCATAATGCTGTCCTTCTCTTGAATT 2693168 Query 68376 TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCC 68435 || || ||||| ||||| | |||| | || || || | |||| | || | Sbjct 2693167 TTGGCTTTGACATTCTCGAAGCTGTCACTGGGCTCAACCTCATGGAAGATGATCTTAACT 2693108 Query 68436 GTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| || || |||||||| Sbjct 2693107 GTCAGAGTCTTCACAAAGATCTGCAT 2693082 >seq279 Length=2078848 Score = 86.0 bits (94), Expect = 1e-11 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 68268 GACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCG 68327 |||||||| ||||||||||| || || || | | |||||||| | |||||| || || Sbjct 1038307 GACTCTTTCTGGATGTTATAGTCAGAAAGAATGCAGCCATCTTCCAGCTGCTTGCCTGCA 1038366 Query 68328 AATATGAGTCTTTGTTGGTC-GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386 || ||||| || || ||||| | | | ||| |||| ||| || || ||||| ||||| | Sbjct 1038367 AAGATGAGCCTCTGCTGGTCAGAGGGAAATACCTT-CTTATCCTGGATCTTGGCCTTCAT 1038425 Query 68387 GGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGAT 68425 || |||||||| | |||||||||| | |||| Sbjct 1038426 ATTTTCAATGGTGTCACTGGGCTCTACTTCCAGGATGAT 1038464 >seq25 Length=15668443 Score = 86.0 bits (94), Expect = 1e-11 Identities = 132/187 (71%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 68273 TTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATAT 68332 ||| |||||| | | ||| |||| || | |||||| | | ||| || || || ||||| Sbjct 2044001 TTTCTGGATGCTGTGATCTGAGAAAGTGCAGCCATCTCC-AGCTGTTTGCCTGCAAATAT 2043943 Query 68333 GAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTC 68392 || | | |||||||| || ||| | |||||||||||||| | || | | | ||| Sbjct 2043942 CAGACGCCGCTGGTCGGGGGGGATGTCCTCCTTGTCTTGAATATGGGCTTGGCCATTCTC 2043883 Query 68393 GATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || |||||| | || |||| | ||||||| | || |||| |||||||| || || Sbjct 2043882 GAAGGTGTCACTGGGCTCAACTTGGAGGGTGATGCTCTTGCCCGCCAGGGTCTTCACAAA 2043823 Query 68453 TATCTGC 68459 |||||| Sbjct 2043822 GATCTGC 2043816 >seq173 Length=4295205 Score = 84.2 bits (92), Expect = 4e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 68356 TGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTT 68415 |||||||||||||||| | |||||||||||| ||| |||||||| | || || | Sbjct 530539 TGCCTTCCTTGTCTTGGACCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCT 530480 Query 68416 CCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 ||| |||||||| ||||| || | ||| || || || ||| ||||||| Sbjct 530479 CCACAGTGATGGTCTTTCCAGTTAAGGTTTTCACAAAGATCGGCATTAT 530431 >seq128 Length=5608787 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||||||||| || || ||||| |||||||||||| | || || || Sbjct 2708593 CCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCG 2708652 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || ||||| |||||||| || || |||||||| Sbjct 2708653 AGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2708696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921478592344760