Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq14 86.0 5e-12 seq73 82.4 6e-11 >seq14 Length=21378024 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | ||| || ||| || || ||||| || Sbjct 6329927 GTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCC 6329868 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || |||||||| || || || || ||||| || ||||| ||| || ||| Sbjct 6329867 GCAAATATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGAATTTTGGCTTTG 6329808 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 6329807 ACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTC 6329748 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 6329747 TTCACAAAGATCTGCAT 6329731 >seq73 Length=8706776 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/228 (68%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || |||| || | ||| | || || || || | ||||||||| || Sbjct 2651769 ACCACCACGAAGCCTCAGCACAAGATGAAGGGTGGACTCCTTCTCAATGTTGTAGTC--- 2651713 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | |||||| |||||| ||||| |||||||| ||| | | |||| || ||||| Sbjct 2651712 -AAAGTACGTCTATCTTCCAGTTGCTTACCAGCAACGATCAATCTTGGTTGATCAGGAGG 2651654 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| ||||| | ||| | ||||| | || ||| || Sbjct 2651653 AATTCCTTCGTTATCCTGGATCTTGGCTTTTATATTTTCTATAGTGTCCGAGGGTTCAAC 2651594 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | | | | | || || || || || ||||||| ||||||||||| Sbjct 2651593 TTTGA-GCTAATAGTCTTCCCCGTAAGGGTTTTTATGAAAATCTGCAT 2651547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420070482196596