Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq14 86.0 5e-12
seq73 82.4 6e-11
>seq14
Length=21378024
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || ||||| || ||||||||||| | ||| || ||| || || ||||| ||
Sbjct 6329927 GTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCC 6329868
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| | || |||||||| || || || || ||||| || ||||| ||| || |||
Sbjct 6329867 GCAAATATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGAATTTTGGCTTTG 6329808
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||| ||| || || || | ||| | || ||||| ||||| ||
Sbjct 6329807 ACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTC 6329748
Query 114366 TTTACAAAAATCTGCAT 114382
|| ||||| ||||||||
Sbjct 6329747 TTCACAAAGATCTGCAT 6329731
>seq73
Length=8706776
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/228 (68%), Gaps = 5/228 (2%)
Strand=Plus/Minus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| || |||| || | ||| | || || || || | ||||||||| ||
Sbjct 2651769 ACCACCACGAAGCCTCAGCACAAGATGAAGGGTGGACTCCTTCTCAATGTTGTAGTC--- 2651713
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
| |||||| |||||| ||||| |||||||| ||| | | |||| || |||||
Sbjct 2651712 -AAAGTACGTCTATCTTCCAGTTGCTTACCAGCAACGATCAATCTTGGTTGATCAGGAGG 2651654
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| || || ||||| ||||| | ||| | ||||| | || ||| ||
Sbjct 2651653 AATTCCTTCGTTATCCTGGATCTTGGCTTTTATATTTTCTATAGTGTCCGAGGGTTCAAC 2651594
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
| | | | | || || || || || ||||||| |||||||||||
Sbjct 2651593 TTTGA-GCTAATAGTCTTCCCCGTAAGGGTTTTTATGAAAATCTGCAT 2651547
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420070482196596
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |