Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq394 96.9 3e-15 seq82 93.3 4e-14 >seq394 Length=841001 Score = 96.9 bits (106), Expect = 3e-15 Identities = 170/244 (70%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 20201 GCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATA 20260 ||||||||||| | || ||||| ||||| || || | | | || |||| ||| Sbjct 665366 GCATCTCCCAAAGAATGCATAAAGTCCCCTGGCTGCAGGTCCCTGATGTGCGCAACCATG 665425 Query 20261 TAAGTTAAG-AGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGA 20319 |||| |||| |||| ||||||| ||||| | ||||| | ||||| |||||| |||| || Sbjct 665426 TAAGGTAAGCAGGGCATAGCTGTCAATGCTGAAAGGTATGCCCAAGCCCATGACTCCTGA 665485 Query 20320 CCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTG 20379 ||| || |||| | ||||| ||||| | ||| || || || || || | | || Sbjct 665486 CCTATGGTACATCCAGCAGGACAGCTCCCATTCACCT-TGTAGAACTGGCAGAGGACATG 665544 Query 20380 ACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGG-GTTCCACGCACACATAATGATTC 20438 || || || ||| ||||| | || || || |||||| ||||||| || |||| Sbjct 665545 GCATGGAGGCAGCAGCATCAGAGGAAAATCTTTTGGAGTTCCAAACACACATGATAATTC 665604 Query 20439 TTCT 20442 |||| Sbjct 665605 TTCT 665608 >seq82 Length=8104705 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || |||| ||| || || | |||||||||||||| ||||| || || || |||| ||| Sbjct 34514 TGTGCAATCATGTAGGTAAGCAGGGAATAGCTGGCGATGTTGAAGGGCACGCCCAGGCCC 34573 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACC 20349 ||||| || |||||||| |||||||| ||||| ||||| || Sbjct 34574 ATGTCACCTGACCTCTGGTACAGCTGGCAGGACAGCTCCCC 34614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441303929291720