Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq394 96.9 3e-15
seq82 93.3 4e-14
>seq394
Length=841001
Score = 96.9 bits (106), Expect = 3e-15
Identities = 170/244 (70%), Gaps = 3/244 (1%)
Strand=Plus/Plus
Query 20201 GCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATA 20260
||||||||||| | || ||||| ||||| || || | | | || |||| |||
Sbjct 665366 GCATCTCCCAAAGAATGCATAAAGTCCCCTGGCTGCAGGTCCCTGATGTGCGCAACCATG 665425
Query 20261 TAAGTTAAG-AGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGA 20319
|||| |||| |||| ||||||| ||||| | ||||| | ||||| |||||| |||| ||
Sbjct 665426 TAAGGTAAGCAGGGCATAGCTGTCAATGCTGAAAGGTATGCCCAAGCCCATGACTCCTGA 665485
Query 20320 CCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTG 20379
||| || |||| | ||||| ||||| | ||| || || || || || | | ||
Sbjct 665486 CCTATGGTACATCCAGCAGGACAGCTCCCATTCACCT-TGTAGAACTGGCAGAGGACATG 665544
Query 20380 ACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGG-GTTCCACGCACACATAATGATTC 20438
|| || || ||| ||||| | || || || |||||| ||||||| || ||||
Sbjct 665545 GCATGGAGGCAGCAGCATCAGAGGAAAATCTTTTGGAGTTCCAAACACACATGATAATTC 665604
Query 20439 TTCT 20442
||||
Sbjct 665605 TTCT 665608
>seq82
Length=8104705
Score = 93.3 bits (102), Expect = 4e-14
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308
|| |||| ||| || || | |||||||||||||| ||||| || || || |||| |||
Sbjct 34514 TGTGCAATCATGTAGGTAAGCAGGGAATAGCTGGCGATGTTGAAGGGCACGCCCAGGCCC 34573
Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACC 20349
||||| || |||||||| |||||||| ||||| ||||| ||
Sbjct 34574 ATGTCACCTGACCTCTGGTACAGCTGGCAGGACAGCTCCCC 34614
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441303929291720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |