Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq14 86.0 5e-12
seq126 82.4 6e-11
>seq14
Length=21378024
Score = 86.0 bits (94), Expect = 5e-12
Identities = 107/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| |||| ||| || ||||||| || || ||| ||| ||||| |||||||||||||
Sbjct 6329957 CCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAG 6329898
Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
| | || || | || |||| || ||||| ||||||||||| ||||||||||| ||
Sbjct 6329897 AGAGTGCGGC-CATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGG 6329839
Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043
| || ||| ||||| ||||||
Sbjct 6329838 GATGCCCTCCTTGTCTTGAATTTT 6329815
>seq126
Length=5838822
Score = 82.4 bits (90), Expect = 6e-11
Identities = 106/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| |||| ||| || ||||||| || || ||| ||| ||||| ||| |||||||||
Sbjct 680964 CCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAG 680905
Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
| | ||| || | || |||| || ||||| |||||||| || ||||||||||| ||
Sbjct 680904 AGAGTGTGGC-CATCCTCCAGCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGG 680846
Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043
| || ||| ||||| ||||||
Sbjct 680845 GATGCCCTCCTTGTCTTGAATTTT 680822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397001992291366
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |