Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq14 86.0 5e-12 seq126 82.4 6e-11 >seq14 Length=21378024 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| ||| || ||||||| || || ||| ||| ||||| ||||||||||||| Sbjct 6329957 CCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAG 6329898 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || | || |||| || ||||| ||||||||||| ||||||||||| || Sbjct 6329897 AGAGTGCGGC-CATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGG 6329839 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | || ||| ||||| |||||| Sbjct 6329838 GATGCCCTCCTTGTCTTGAATTTT 6329815 >seq126 Length=5838822 Score = 82.4 bits (90), Expect = 6e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| ||| || ||||||| || || ||| ||| ||||| ||| ||||||||| Sbjct 680964 CCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAG 680905 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | ||| || | || |||| || ||||| |||||||| || ||||||||||| || Sbjct 680904 AGAGTGTGGC-CATCCTCCAGCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGG 680846 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | || ||| ||||| |||||| Sbjct 680845 GATGCCCTCCTTGTCTTGAATTTT 680822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397001992291366