Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq14 122 2e-22
seq73 95.1 3e-14
seq26 89.7 1e-12
seq93 87.8 4e-12
seq353 84.2 5e-11
seq6 84.2 5e-11
>seq14
Length=21378024
Score = 122 bits (134), Expect = 2e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | ||| || | || | ||| ||||| ||||| || || || | |
Sbjct 6329957 CCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAG 6329898
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | ||||| || || || ||||||||||| ||| | ||||
Sbjct 6329897 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGG 6329838
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || || || ||||| ||||| || || || || | || || | || ||
Sbjct 6329837 ATGCCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACC 6329778
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||| || ||||| ||||| || || ||||||||
Sbjct 6329777 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731
>seq73
Length=8706776
Score = 95.1 bits (104), Expect = 3e-14
Identities = 158/227 (70%), Gaps = 5/227 (2%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || || || || ||||||| ||| || || | || || |||||
Sbjct 2651768 CCACCACGAAGCCTCAGCACAAGATGAAGGGTGGACTCCTTCTCAATGTTGTAGTC---- 2651713
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || |||| ||||| | ||| || || || | ||||| | ||||| | ||
Sbjct 2651712 AAAGTACGTCTATCTTCCAGTTGCTTACCAGCAACGATCAATCTTGGTTGATCAGGAGGA 2651653
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| ||||||||||| || ||||| | |||||||||| || | ||| |||
Sbjct 2651652 ATTCCTTCGTTATCCTGGATCTTGGCTTTTATATTTTCTATAGTGTCCGAGGGTTCAACT 2651593
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| |||| | || |||||||| || || || || | ||| ||||||||
Sbjct 2651592 TTGAGC-TAATAGTCTTCCCCGTAAGGGTTTTTATGAAAATCTGCAT 2651547
>seq26
Length=15501076
Score = 89.7 bits (98), Expect = 1e-12
Identities = 151/218 (69%), Gaps = 3/218 (1%)
Strand=Plus/Plus
Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315
|| || || || ||||||| ||| || || || || || ||||| | || |||
Sbjct 10001825 AGCCTCAGCACCAGATGAAAGGTGGACTCCTTCTGAATGTTGTAGTCAGACTCAGTACGT 10001884
Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375
| ||||| | ||| || | || ||||| || | || ||| | || ||||||||
Sbjct 10001885 CAATCTTCCAGTTGCTTATCAGCAAAGATTAGTCTTTGATGATTAGGAGGAATTCCTTCC 10001944
Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435
||||||||||| || || || || |||||||||| ||| | ||| || || | ||
Sbjct 10001945 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATC---TGGTTCAACCTCCATTGTA 10002001
Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| |||||| | || || || || ||||| ||||||||
Sbjct 10002002 ATAGTCTTCTCTGTAAGGGTTTTTACGAAAATCTGCAT 10002039
>seq93
Length=7280091
Score = 87.8 bits (96), Expect = 4e-12
Identities = 102/135 (76%), Gaps = 6/135 (4%)
Strand=Plus/Minus
Query 288314 GTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG--GATTCC 288371
|||| ||||| | ||| || || || |||||||| | ||| ||| || || || |||
Sbjct 3503791 GTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTCTGCTGA---TCAGGAGGAATCC 3503735
Query 288372 TTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAG 288431
||| ||||||||||| || || || || |||||||||| || | | ||| || |||||
Sbjct 3503734 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGGGTC-CGAGGTTCAACCTCGAG 3503676
Query 288432 CGTGATCGTCTTCCC 288446
||| || ||||||||
Sbjct 3503675 CGTAATAGTCTTCCC 3503661
>seq353
Length=1223491
Score = 84.2 bits (92), Expect = 5e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| ||||||||||||||||| || || ||||| || || || | || || | || ||
Sbjct 241981 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 242040
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
|| || ||||| ||||| || ||||| ||||| || || ||||||||| ||
Sbjct 242041 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTTG 242091
>seq6
Length=30479472
Score = 84.2 bits (92), Expect = 5e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 288315 TCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTC 288374
||| ||||| | ||| || || || |||||||| | || ||| | || ||||||||
Sbjct 3763687 TCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTC 3763628
Query 288375 TTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGT 288434
||||||||||| || ||||| | |||||| ||| || | ||| | || |||||
Sbjct 3763627 CTTATCCTGGATCTTGGCTTTTGCATTTTCTGTAGTGTCCGAGGGTTCAGCCTCCAGCGT 3763568
Query 288435 GATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| |||||||| || || || || | ||| ||||||||
Sbjct 3763567 AACAGTCTTCCCTGTAAGGGTTTTTATGAAAATCTGCAT 3763529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179465727918474
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |