Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq14 122 2e-22 seq73 95.1 3e-14 seq26 89.7 1e-12 seq93 87.8 4e-12 seq353 84.2 5e-11 seq6 84.2 5e-11 >seq14 Length=21378024 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | || | ||| ||||| ||||| || || || | | Sbjct 6329957 CCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAG 6329898 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | ||||| || || || ||||||||||| ||| | |||| Sbjct 6329897 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGG 6329838 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || || ||||| ||||| || || || || | || || | || || Sbjct 6329837 ATGCCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACC 6329778 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 6329777 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731 >seq73 Length=8706776 Score = 95.1 bits (104), Expect = 3e-14 Identities = 158/227 (70%), Gaps = 5/227 (2%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || || || || ||||||| ||| || || | || || ||||| Sbjct 2651768 CCACCACGAAGCCTCAGCACAAGATGAAGGGTGGACTCCTTCTCAATGTTGTAGTC---- 2651713 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || |||| ||||| | ||| || || || | ||||| | ||||| | || Sbjct 2651712 AAAGTACGTCTATCTTCCAGTTGCTTACCAGCAACGATCAATCTTGGTTGATCAGGAGGA 2651653 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || ||||| | |||||||||| || | ||| ||| Sbjct 2651652 ATTCCTTCGTTATCCTGGATCTTGGCTTTTATATTTTCTATAGTGTCCGAGGGTTCAACT 2651593 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | |||| | || |||||||| || || || || | ||| |||||||| Sbjct 2651592 TTGAGC-TAATAGTCTTCCCCGTAAGGGTTTTTATGAAAATCTGCAT 2651547 >seq26 Length=15501076 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 || || || || ||||||| ||| || || || || || ||||| | || ||| Sbjct 10001825 AGCCTCAGCACCAGATGAAAGGTGGACTCCTTCTGAATGTTGTAGTCAGACTCAGTACGT 10001884 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 | ||||| | ||| || | || ||||| || | || ||| | || |||||||| Sbjct 10001885 CAATCTTCCAGTTGCTTATCAGCAAAGATTAGTCTTTGATGATTAGGAGGAATTCCTTCC 10001944 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 ||||||||||| || || || || |||||||||| ||| | ||| || || | || Sbjct 10001945 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATC---TGGTTCAACCTCCATTGTA 10002001 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||| | || || || || ||||| |||||||| Sbjct 10002002 ATAGTCTTCTCTGTAAGGGTTTTTACGAAAATCTGCAT 10002039 >seq93 Length=7280091 Score = 87.8 bits (96), Expect = 4e-12 Identities = 102/135 (76%), Gaps = 6/135 (4%) Strand=Plus/Minus Query 288314 GTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG--GATTCC 288371 |||| ||||| | ||| || || || |||||||| | ||| ||| || || || ||| Sbjct 3503791 GTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTCTGCTGA---TCAGGAGGAATCC 3503735 Query 288372 TTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAG 288431 ||| ||||||||||| || || || || |||||||||| || | | ||| || ||||| Sbjct 3503734 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGGGTC-CGAGGTTCAACCTCGAG 3503676 Query 288432 CGTGATCGTCTTCCC 288446 ||| || |||||||| Sbjct 3503675 CGTAATAGTCTTCCC 3503661 >seq353 Length=1223491 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||||||||| || || ||||| || || || | || || | || || Sbjct 241981 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 242040 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || ||||| ||||| || ||||| ||||| || || ||||||||| || Sbjct 242041 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTTG 242091 >seq6 Length=30479472 Score = 84.2 bits (92), Expect = 5e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 288315 TCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTC 288374 ||| ||||| | ||| || || || |||||||| | || ||| | || |||||||| Sbjct 3763687 TCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTC 3763628 Query 288375 TTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGT 288434 ||||||||||| || ||||| | |||||| ||| || | ||| | || ||||| Sbjct 3763627 CTTATCCTGGATCTTGGCTTTTGCATTTTCTGTAGTGTCCGAGGGTTCAGCCTCCAGCGT 3763568 Query 288435 GATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | |||||||| || || || || | ||| |||||||| Sbjct 3763567 AACAGTCTTCCCTGTAAGGGTTTTTATGAAAATCTGCAT 3763529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179465727918474