Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq14 111 2e-19
seq118 91.5 1e-13
seq353 84.2 2e-11
seq13 84.2 2e-11
>seq14
Length=21378024
Score = 111 bits (122), Expect = 2e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || |||| | |||||| | || | || || ||||| || ||||||||||||| |
Sbjct 6329957 CCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAG 6329898
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| ||||| | || || ||||| ||||| ||| | || || |||||||| || || ||
Sbjct 6329897 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGG 6329838
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395
|| || || || ||||| | |||| ||||| ||| ||| | || |||| || || ||
Sbjct 6329837 ATGCCCTCCTTGTCTTG-AATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAAC 6329779
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | ||||||||| |||| || || || || || |||||
Sbjct 6329778 CTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731
>seq118
Length=6029945
Score = 91.5 bits (100), Expect = 1e-13
Identities = 117/159 (74%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT- 64347
||||| ||||||||||| ||| | ||||||| || |||||| |||||||| ||||||||
Sbjct 3917750 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTACTGGTCAGGAGGAATGCCTTCTTTA 3917809
Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407
| ||||| | || ||| ||| ||| | || |||| | |||| || | || |
Sbjct 3917810 TCCTTGT-TCTTAGCCTTCACATTCTCAATGGTGTCACTGAGCTCCATCTCCAAGGTGAT 3917868
Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|||||||| |||| || || || || || ||||||||
Sbjct 3917869 AGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 3917907
>seq353
Length=1223491
Score = 84.2 bits (92), Expect = 2e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || || || | || || ||||| || || ||||| || | | || || | ||
Sbjct 241195 AAGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCAGAAAGAGTACGGCCATC 241254
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| ||||||||||| ||| | ||||||| ||||||||| || ||||| |||||||| ||
Sbjct 241255 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATC 241314
Query 64351 TTGTATTTT 64359
|| || ||
Sbjct 241315 CTGGATCTT 241323
>seq13
Length=21495731
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || ||||| || ||||||||||||| || ||||| | || || ||||| || ||
Sbjct 9191898 GTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTCTAGCTGTTTACCT 9191839
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | || || ||||||| || || || || || || | ||||| | |||||||||
Sbjct 9191838 GCAAATATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGTCTTG-AAATTTTGCTTT 9191780
Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425
||| ||| | || |||| || || || || | || | ||||||||| ||| ||
Sbjct 9191779 GACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTATCAGGGT 9191720
Query 64426 TTTTACGAAAATTTGCAT 64443
|| || || || || ||
Sbjct 9191719 CTTCACAAAGATCTGAAT 9191702
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499566836674520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |