Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq14 120 3e-22
seq13 107 2e-18
seq126 102 8e-17
>seq14
Length=21378024
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||||| || | || |||||||| || || ||||||||
Sbjct 6329957 CCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAG 6329898
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || |||||||| || || | |||| ||||||||||| || ||
Sbjct 6329897 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGG 6329838
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||| | ||| ||| || |||| | |||| |||||| | ||| ||
Sbjct 6329837 ATGCCCTCCTTGT-CTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAAC 6329779
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | || ||||| ||||| || || ||||| ||||||||
Sbjct 6329778 CTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731
>seq13
Length=21495731
Score = 107 bits (118), Expect = 2e-18
Identities = 152/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963
|||||| | || || |||||||| || || |||||||| | ||||| ||| ||
Sbjct 9191911 CACCAAGTATAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTC 9191852
Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023
||||||||| || || | |||| |||||||||| || || |||||||||| || | |
Sbjct 9191851 TAGCTGTTTACCTGCAAATATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGT-CTT 9191793
Query 127024 GATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082
|| || ||| |||| | |||| |||||| | |||||| |||| ||| | || |
Sbjct 9191792 GAAATTTTGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCT 9191733
Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| |||| || || ||||| ||||| ||
Sbjct 9191732 TGCCTATCAGGGTCTTCACAAAGATCTGAAT 9191702
>seq126
Length=5838822
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||||| || | || |||||||| || || |||||||
Sbjct 680964 CCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAG 680905
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||| | ||| || |||||||| || || | || | ||||||||||| || ||
Sbjct 680904 AGAGTGTGGCCATCCTCCAGCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGG 680845
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||| | ||| ||| || |||| | |||| |||||| | ||| ||
Sbjct 680844 ATGCCCTCCTTGT-CTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAAC 680786
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | || ||||| |||| || || ||||| ||||||||
Sbjct 680785 CTCGAGGGTGATGGTCTTGCCCGTCATGGTCTTCACAAAGATCTGCAT 680738
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475426604043920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |