Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq331 262 6e-65 seq203 237 2e-57 seq13 156 6e-33 seq19 140 5e-28 >seq331 Length=1449978 Score = 262 bits (290), Expect = 6e-65 Identities = 438/631 (69%), Gaps = 4/631 (1%) Strand=Plus/Plus Query 9415 TTTCTACCACCACTAATCCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCT 9474 ||||| |||||| || | || ||||| || || || || | ||||| || |||| Sbjct 1418382 TTTCTGCCACCAAAAACACTGCCAGCAATTTGCCTGGTAAATTACTCAACGAACTGGGTA 1418441 Query 9475 ATTCCGTGCTTGATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCG 9534 | ||| || || | | |||||||||||||| | || |||| || |||| | | Sbjct 1418442 AGTCCATGTTTCAGTAATATGGAATTGTTGTATATAAACTGTTGATAGTTGTACTCCTGG 1418501 Query 9535 TCGCCTATGCGAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCG 9594 || || |||| ||||||| || | ||||||| | || || || || ||||| Sbjct 1418502 TCATGAATTTGAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAAAGTGTGTTAAACTCA 1418561 Query 9595 GCCGCTATTCGGTTCTGGTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGA 9652 | | || |||| |||||||| || | ||| ||| || | ||| |||||||| Sbjct 1418562 GAAGAAATATGGTTTTGGTACTGGAATTGTTGGTT--GAAAAGCAGCTCTGGGTCAAACT 1418619 Query 9653 TTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGG 9712 | || | |||||| || || | | ||||| ||||| | | || | ||| ||||||| Sbjct 1418620 TCAGTTTGAAGTGATAGCCATTCAAGTGCTGAACATAGTCTTCAATCACAATTTTAATGG 1418679 Query 9713 TTTCCCCGGTAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGT 9772 | ||||| | | ||||| | | || || |||||| ||| ||| |||| || || | Sbjct 1418680 TCTCCCCTATTAATATTAGTCTGCTTGTCTGGAACAACCACTCATCATCCCACTCTGGAT 1418739 Query 9773 GTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACA 9832 |||| ||||| ||||||||||| || | || ||||| ||||| || || || |||| Sbjct 1418740 GTTCCTGTTTAAGAACATCGCACACTCGATTATGTTCCTGTAGCCAGATTGTTGCATACA 1418799 Query 9833 TCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGG 9892 |||| | ||| ||||||| |||||| || | | |||||||||||| | || | || | Sbjct 1418800 TCATCAGACCAGGCACTAGACCAAAGACCTTCTGCCCCACTGCAAACTGAAGGTGTTCAG 1418859 Query 9893 GCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTT 9952 | || | || | || | ||| | |||||| || |||||||| |||| ||||||| | Sbjct 1418860 GGACGTGAGGAGGGTAGATCATCTCCACCTGAGTGTCTTTGACTATGGGAGGATACACCT 1418919 Query 9953 CACCGTCAATAACCTGATACTTCATCTTCCCATCCTTGAACAGACGCAGCTTATGCTGCT 10012 | || ||||| |||||||| || | || | ||||||||| || ||||||||||| || Sbjct 1418920 CTCCATCAATCACCTGATATTTTAGTTTTCTATCCTTGAAGAGGCGCAGCTTATGTTGTC 1418979 Query 10013 TCTCCAACGTTTCGCCGTAGATGTGACTGAG 10043 | |||| ||||| || || | ||||| || Sbjct 1418980 TATCCAGAGTTTCACCATAAACATGACTTAG 1419010 Score = 127 bits (140), Expect = 3e-24 Identities = 200/285 (70%), Gaps = 1/285 (0%) Strand=Plus/Plus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| |||||||| || || |||||||||||||| | || || || | ||| Sbjct 1417969 AAGGGACAGCCCTTCACGTTACGGCAGATGAGGGACTGAATAGAGGCAGTGTTAATGATC 1418028 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | || ||| | || || || || ||||| |||||||| || || || || || Sbjct 1418029 TTAAAGCCTTCTTCTCCTCCAAAAGTGCTTGGTTTCCAATAGTGAGGAGAACACATAGGA 1418088 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || ||| || | ||| ||||| || || || |||| || | ||| ||||| ||| Sbjct 1418089 TTACCCAAAAGTC-TTTAAAGGAGAATGGTGCGCCCATTTCCACCATGGTCTCATTAAAG 1418147 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 || ||| | ||||| || ||||| || | |||| ||| || | || | || || | | Sbjct 1418148 ATAGCATCAGGACGAGGCTTTTCCACCAGGAAGGCAGGATAAAACTCCAAGGCATCAATG 1418207 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | |||||||||||||||||| || || || |||||||| ||| Sbjct 1418208 TCACAATAGAGGGCTTCCAACTCTGCCGCCATTTCCTTCTCTCCT 1418252 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 10390 CCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATAA 10449 |||||||| || | || || ||||||||| | || ||||| || | ||| ||||| Sbjct 1419198 CCTTTCACACCCATGGGTGTTGGGCAGTCATCTGCCACAGGAGGAAGGGCTCTGGTATAG 1419257 Query 10450 TAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGGG 10509 ||||| || ||||| || ||||||||| | ||||||||||| | | ||||| || Sbjct 1419258 TAGGAGAGGTTCGAGAAGGCTTCCCAGTTTTTGTAGCCATAGTGCACATTGTAAGTTGGT 1419317 Query 10510 GGACTGTCAATCA 10522 ||||||||||||| Sbjct 1419318 GGACTGTCAATCA 1419330 >seq203 Length=3504862 Score = 237 bits (262), Expect = 2e-57 Identities = 520/773 (67%), Gaps = 22/773 (3%) Strand=Plus/Plus Query 9283 CCTGTTAATTCTTCGAACGAT--TCGTAGGGCTTGAGCCGGAAGCGCTTTCGGTACTCGT 9340 ||||| | |||||| || ||| | ||||||||| || |||||| || |||||||| | Sbjct 2599190 CCTGTAAGTTCTTCAAATGATATTTGTAGGGCTTCAGGTTGAAGCGTTTGCGGTACTCAT 2599249 Query 9341 TCAGCGATTGGTACCGCATCTTTCGGCCGTGCTCTATGCCCTCCCGGGACACCCGTCTG- 9399 | | ||| |||| ||| |||| || ||| || | || || ||| || || Sbjct 2599250 TGAAAGATGGGTATTTCATATTTCTGCTGTGGTCAACTGAGGCCTTGGCCACT-GTTTGT 2599308 Query 9400 AGGGCGGGGGGTATGTTTCTACCACCACTAATCCGACCGGCAATCTGTCTAGTGAACGAT 9459 | || | || | || || |||||| || || || ||||| ||||| ||||| || Sbjct 2599309 ACTGCAGATGGCACATTCCTGCCACCAGAAACCCTGCCAGCAATTTGTCTGGTGAATGAC 2599368 Query 9460 TCAACTAATTGGGCTATTCCGTGCTTGATGAGGATGGAATTGTTGTAAACGAAGTGTTCG 9519 ||||| || |||| | ||| || | | || ||||| |||||||| | || |||| Sbjct 2599369 TCAAC-AACTGGGTAAGTCCATGTTCCAGGAATATGGAGTTGTTGTAGAGAAACTGTTGA 2599427 Query 9520 TAACCATACTTCGCGTCGCCTATGCGAAAATCATCAGGCAACAGAGAATGCCAGCGGTAG 9579 || |||| | ||| || |||| ||||||| || | || |||| | || Sbjct 2599428 TAGTTTTACTCCTGGTCATGAATTTGAAAGGTGTCAGGCAGAAGGGGATTCCAGTGTTA- 2599486 Query 9580 AGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAA--GGCGGTACCGAACAGTA 9637 | ||| | || || |||| |||||| | || | ||| ||| || | Sbjct 2599487 ---------AGCTCAGAAGCAATATGGTTTTGGTACCGGAATTGTTGGTT--GAAAAGCA 2599535 Query 9638 ACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACATACTGTGTGA 9697 ||| |||||||| | || | ||||| || || || | |||||||| || | | | Sbjct 2599536 GCTCTGGGTCAAACTTCAGTTTCAAGTGATAGCCACTCAAGTGCTGGACGTAGTCTTCAA 2599595 Query 9698 TTATAATGTTAATGGTTTCCCCGGTAATGATTAGACGAGTGGTTTGAAACAACTGCTCGT 9757 | | ||| | |||||| ||||| | | ||||| | | || || || |||||||| | Sbjct 2599596 TCACAATTTGAATGGTCTCCCCTATTAATATTAGTCTGCTCGTCTGGAAAAACTGCTCAT 2599655 Query 9758 CACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCC 9817 || |||| || || |||| ||||| || ||||| || || | ||| ||||| | |||| Sbjct 2599656 CATCCCACTCTGGAGGTTCCTGTTTAAGCACATCACACACTCGGTTATGTTCCCGTAGCC 2599715 Query 9818 ATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACTGCAA 9877 | || ||||| ||||| || ||| ||| ||| |||||| || || | |||||| |||| Sbjct 2599716 AGATTGTGGCATACAT---TAGACCAGGCTCTAGACCAAAGACCTCCTGCCCCACAGCAA 2599772 Query 9878 AGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGG 9937 | | || | || || | | || | || | ||| | |||||| || |||||||| Sbjct 2599773 ACGGAAGGTGTTCAGGGATGTGAGGGGGGTAGATCATCTCCACCTGAGTGTCTTTGACTA 2599832 Query 9938 TGGGGGGATACATTTCACCGTCAATAACCTGATACTTCATCTTCCCATCCTTGAACAGAC 9997 |||| ||||||| || || |||| |||||||| |||| || ||| ||||||| | | Sbjct 2599833 TGGGAGGATACACCTCTCCACCAATCACCTGATATTTCAGTTTTCCAGCCTTGAAGACGC 2599892 Query 9998 GCAGCTTATGCTGCTTCTCCAACGTTTCGCCGTAGATGTGACTGAGATCGACC 10050 |||||||||| || | |||| ||||| || || | ||||| || || ||| Sbjct 2599893 GCAGCTTATGTTGTCTATCCAGAGTTTCACCATAAACATGACTTAGGTCCACC 2599945 Score = 95.1 bits (104), Expect = 2e-14 Identities = 207/306 (68%), Gaps = 7/306 (2%) Strand=Plus/Plus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||| | | | || ||||| |||||||| || || |||||||||||||| | Sbjct 2598889 AACACTGAATGAGACGAAGGGACAGCCCTTCACGTTACGGCAGATGAGGGACTGAATCGA 2598948 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGT----CCCCGCCGAAGGTGCTGGGTTTCCAGT 8990 || || || | | | | || | || | || || || ||||| || ||||| | Sbjct 2598949 GGCAGTGTTGATGTTCTTAAAGGAGAAGTGGTTCTCCTCCAAAAGTGCTTGGCTTCCAAT 2599008 Query 8991 ACGCCGGGGAGCAGATGACGTTCGCC-ATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGC 9049 | || || || || | | || || | || ||||||| ||| || || | |||| Sbjct 2599009 AGTGAGGAGATCATAT-AGGATCACCCAAAAGTCCTTTCAGGGAGAATGGTGATCCCATT 2599067 Query 9050 TCGATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTG 9109 || | ||| ||||||| ||||||| | || ||| || ||||| || | || | ||| Sbjct 2599068 TCCACCATGGTCTCACCAAAGATGGGTCAGG-ACGAGGCTTTTCCACCAGGAGGGCAGGA 2599126 Query 9110 TAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTC 9169 |||| || | || || | || || ||||||||||||||||| || || || | |||| Sbjct 2599127 TAGAACTCCATGGCATCAATGTTACCTTAGAGGGCTTCCAACTCTGCGGCCATTTTCTTC 2599186 Query 9170 TCACCT 9175 || ||| Sbjct 2599187 TCTCCT 2599192 >seq13 Length=21495731 Score = 156 bits (172), Expect = 6e-33 Identities = 215/301 (71%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||| | | | || ||||| |||||||| || || |||||||||||||| | Sbjct 3827902 AACACTGAATGAGACGAAGGGACAGCCCTTCACGTTACGGCAGATGAGGGACTGAATAGA 3827843 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| | || || || || || || || ||||| || ||||| || Sbjct 3827842 GGCAGTGTTGATGATCTTAAAGCCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAATAGTG 3827783 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 || || || || || ||| || ||||||||||| || || || |||| || | Sbjct 3827782 AGGAGAACATATAGGATTACCCAAAAGTCCTTTCAAGGAGAATGGTGCGCCCATTTCCAC 3827723 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||| ||||||| ||||||||| | ||||| || ||||| || | || | ||| |||| Sbjct 3827722 CATGGTCTCACCAAAGATGGCATCAGGACGAGGCTTTTCCACCAGGAGGGCAGGATAGAA 3827663 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || || || || | ||| |||||||| ||||||||||| || || || |||||||| || Sbjct 3827662 CTCCACGGCATCAATGTCACCATAGAGAGCTTCCAACTCTGCGGCCATTTCCTTCTCTCC 3827603 Query 9175 T 9175 | Sbjct 3827602 T 3827602 Score = 100 bits (110), Expect = 4e-16 Identities = 195/286 (68%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| ||||| |||| || ||||| || |||| | ||| || | | | ||| Sbjct 3826768 CCAGCAATTTGTCTGCTGAATGACTCAACAAACTGGGTAAGTCCATGTTCCAGTAAAATG 3826709 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| | || |||| || |||| | ||| || |||| ||| Sbjct 3826708 GAGTTGTTGTAGATAAACTGTTGATAGTTGTACTCCTGGTCATGAATTTGAAAGGTGTCA 3826649 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | ||||||| | || || || || ||||| | || || ||||| |||||| Sbjct 3826648 GGCAGAAGGGGATGCCAGTGATAAAGTGTGTTAAACTCAGAAGCAATACGGTTTTGGTAC 3826589 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || || | ||| ||| || | ||| |||||||| | || | |||||| || || | Sbjct 3826588 TGGAATTGTTGGTT--GAAAAGCAGCTCTGGGTCAAACTTCAGTTTGAAGTGATAGCCAC 3826531 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | | ||||||||||| | | || | ||| |||||||| ||||| Sbjct 3826530 TCAAGTGCTGGACATAGTCTTCAATCACAATTTTAATGGTCTCCCC 3826485 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 10388 CACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTAT 10447 |||||||||| || | || || ||||||||| | || ||||| || | ||| |||| Sbjct 3824658 CACCTTTCACACCCATGGGTGTTGGGCAGTCATCTGCCACAGGAGGAAGGGCTCTGGTAT 3824599 Query 10448 AATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCG 10507 | ||||| || || || || ||||||||| | ||||||||||| | | ||||| | Sbjct 3824598 AGTAGGAGAGGTTAGAGAAGGCTTCCCAGTTTTTGTAGCCATAGTGCACATTGTAAGTTG 3824539 Query 10508 GGGGACTGTCAATCATCTCGGACCTGGCT 10536 | ||||||||||||| | || |||||| Sbjct 3824538 GTGGACTGTCAATCAAATGTGATCTGGCT 3824510 >seq19 Length=19581918 Score = 140 bits (154), Expect = 5e-28 Identities = 178/245 (73%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || |||| || ||||| || || ||||| |||||||||||||||||| Sbjct 10757979 GTGGCCGTGTTGACAATGTTGAAGCCTACCTCGCCACCGAATGTGCTGGGTTTCCAGTAC 10757920 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || ||||||||| ||| ||| || || || | |||||| |||||||| | ||| Sbjct 10757919 TCTGGAGAGCAGATGGGGTTTCCCAGAAGACCCTTAAGGGAAAAGGGAGCCCCAATCTCT 10757860 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAG 9112 || |||||||| || || |||| ||| | ||||| | | | || | |||| Sbjct 10757859 ATCATGCTCTCCCCAAAAATGGAGTTCGGAAGGCACTTTTCAAGCAGCAGCCCCGGGTAG 10757800 Query 9113 AGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCA 9172 | ||| | ||| |||| ||| || || || | |||||||| || || ||||||||||| Sbjct 10757799 AATTCCAAAGCATCGATGTCTCCGTACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCT 10757740 Query 9173 CCTAC 9177 ||||| Sbjct 10757739 CCTAC 10757735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723615071292200