Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq30 93.3 7e-14 >seq30 Length=14751797 Score = 93.3 bits (102), Expect = 7e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| || || | |||||| || ||||||| ||| || || || || | Sbjct 817609 CCTGCTTCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGTTCAGCAATAT 817668 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAA 204029 | ||||||| |||||||||||| || ||||||| | | ||||| ||||| |||| || Sbjct 817669 GTATGTTCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCTGCTGCCATTTTGAGAA 817728 Query 204030 TGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 || ||||| || || |||||||| ||||| Sbjct 817729 CAGTTTTCTGAGAGATTTCCCACACAGTCTT 817759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795031125970480