Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq353 105 2e-17
seq455 102 2e-16
seq6 98.7 2e-15
seq90 95.1 3e-14
seq279 93.3 1e-13
seq118 91.5 3e-13
seq26 91.5 3e-13
seq14 87.8 4e-12
>seq353
Length=1223491
Score = 105 bits (116), Expect = 2e-17
Identities = 100/128 (78%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| || || ||||| || |||| |||||||||| | ||| | ||||||
Sbjct 241196 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCAGAAAGAGTACGGCCATCT 241255
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || || |||||||| | ||||||||| || ||| |||||| |||
Sbjct 241256 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCC 241315
Query 199538 TGAATCTT 199545
|| |||||
Sbjct 241316 TGGATCTT 241323
>seq455
Length=570085
Score = 102 bits (112), Expect = 2e-16
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469
|||| ||||| ||||| || || || |||||||| | | ||||||||||| ||| || |
Sbjct 193678 GAAGCCTCAGAACAAGATGAAGGGTGGACTCCTTCTAAATGTTGTAGTCAGACAAGGTAC 193619
Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529
||||||||| || ||||| || || ||||| |||| ||||| || ||| ||||||||
Sbjct 193618 GTCCATCTTCTAGTTGCTTACCAGCAAAGATCAGACTTTGCTGATCAGGAGGAATTCCTT 193559
Query 199530 C 199530
|
Sbjct 193558 C 193558
>seq6
Length=30479472
Score = 98.7 bits (108), Expect = 2e-15
Identities = 152/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469
|||| ||||| | ||| || | || |||||||| || | | ||| ||||| |||||| |
Sbjct 3763748 GAAGCCTCAGCATAAGATGAGGGGTGGACTCCTTCTGAATGCTGTGGTCAGACAAAGTAC 3763689
Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529
|||||||||||| ||||| || || ||||| || | ||||| || ||| ||||||||
Sbjct 3763688 ATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTT 3763629
Query 199530 CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589
| ||||| ||||| || | ||| ||||| | | ||| | |||| ||
Sbjct 3763628 CCTTATCCTGGATCTTGGCTTTTGCATTTTCTGTAGTGTCCGAGGGTTCAGCCTCCAGCG 3763569
Query 199590 TGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
| | ||||| || || || ||||| | ||||| ||
Sbjct 3763568 TAACAGTCTTCCCTGTAAGGGTTTTTATGAAAATCTG 3763532
>seq90
Length=7592057
Score = 95.1 bits (104), Expect = 3e-14
Identities = 82/102 (80%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
|||||| | || ||||| || ||||| |||| |||||||||| || || | |||||
Sbjct 464132 CAGGACCAAATGCAGAGTGGATTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCCATC 464073
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518
|||||||||||||||||| ||||| || | ||||||||| ||
Sbjct 464072 TTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGG 464031
>seq279
Length=2078848
Score = 93.3 bits (102), Expect = 1e-13
Identities = 124/170 (73%), Gaps = 2/170 (1%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| | | ||||| || |||| ||| ||||||| | | | | ||||||
Sbjct 1038289 AGGACCAGGTGCTGGGCTGACTCTTTCTGGATGTTATAGTCAGAAAGAATGCAGCCATCT 1038348
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCG-GAAAAATTCCTTCTCGCTC 199536
||||||||||| || || |||||||| | ||||||||| | | |||| |||||| ||
Sbjct 1038349 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGAGGGAAATACCTTCT-TATC 1038407
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586
||| ||||| ||||| ||| | |||||| | | ||||| ||||
Sbjct 1038408 CTGGATCTTGGCCTTCATATTTTCAATGGTGTCACTGGGCTCTACTTCCA 1038457
>seq118
Length=6029945
Score = 91.5 bits (100), Expect = 3e-13
Identities = 146/208 (70%), Gaps = 5/208 (2%)
Strand=Plus/Plus
Query 199430 AGAGTCGACTCCTTTTGGACGTTGTAGT--CAGCCAAAGTCCTTCCATCTTCCAGCTGCT 199487
|| || ||||| || |||| ||| | | ||| | ||| | ||||||||||||||||
Sbjct 3917703 AGGGTGGACTCTTTCTGGATATTGCAATATCAGAAAGAGTGCAGCCATCTTCCAGCTGCT 3917762
Query 199488 TTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTT 199547
| || || |||||||| | || |||||| ||| ||| |||||| |||| ||||
Sbjct 3917763 TGCCTGCAAAGATGAGCCTCTACTGGTCAGGAGGAATGCCTTCTTTATCCTTGTTCTTAG 3917822
Query 199548 GCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGA 199607
|||||| || | |||||| | || | ||||| ||||| ||||| || || |
Sbjct 3917823 CCTTCACATTCTCAATGGTGTCACTGAGCTCCATCTCCAAGGTGATAGTCTTGCCAGTCA 3917882
Query 199608 GAGTTTTCACAAAAATTTGGTACATTTT 199635
| || |||||||| || || ||||||
Sbjct 3917883 GGGTCTTCACAAAGATCTG---CATTTT 3917907
>seq26
Length=15501076
Score = 91.5 bits (100), Expect = 3e-13
Identities = 150/216 (69%), Gaps = 3/216 (1%)
Strand=Plus/Plus
Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470
||| ||||| || || || | || |||||||| || | ||||||||||| | ||| |
Sbjct 10001824 AAGCCTCAGCACCAGATGAAAGGTGGACTCCTTCTGAATGTTGTAGTCAGACTCAGTACG 10001883
Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530
|| ||||||||| ||||| | || ||||| || | || || | ||| |||||||||
Sbjct 10001884 TCAATCTTCCAGTTGCTTATCAGCAAAGATTAGTCTTTGATGATTAGGAGGAATTCCTTC 10001943
Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590
||||| ||||| ||| || ||| | || || || ||| || |||| ||
Sbjct 10001944 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATC---TGGTTCAACCTCCATTGT 10002000
Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| ||||| | || || ||||| || ||||| ||
Sbjct 10002001 AATAGTCTTCTCTGTAAGGGTTTTTACGAAAATCTG 10002036
>seq14
Length=21378024
Score = 87.8 bits (96), Expect = 4e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| || || ||||| || |||| |||||| || | | ||| | |||||
Sbjct 6329942 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCC 6329883
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||||||| || || || || || ||||||||||| || || || || || ||
Sbjct 6329882 TCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCT 6329823
Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
||||| ||| || || || |||| |||||| | | || || || | ||||| ||
Sbjct 6329822 TGAAT-TTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 6329764
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| ||||| || || |||||||| || ||
Sbjct 6329763 CTTGCCCGTCAGGGTCTTCACAAAGATCTG 6329734
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178733045121361
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |