Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq353 105 2e-17 seq455 102 2e-16 seq6 98.7 2e-15 seq90 95.1 3e-14 seq279 93.3 1e-13 seq118 91.5 3e-13 seq26 91.5 3e-13 seq14 87.8 4e-12 >seq353 Length=1223491 Score = 105 bits (116), Expect = 2e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || ||||| || |||| |||||||||| | ||| | |||||| Sbjct 241196 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCAGAAAGAGTACGGCCATCT 241255 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||||||||| || ||| |||||| ||| Sbjct 241256 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCC 241315 Query 199538 TGAATCTT 199545 || ||||| Sbjct 241316 TGGATCTT 241323 >seq455 Length=570085 Score = 102 bits (112), Expect = 2e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 |||| ||||| ||||| || || || |||||||| | | ||||||||||| ||| || | Sbjct 193678 GAAGCCTCAGAACAAGATGAAGGGTGGACTCCTTCTAAATGTTGTAGTCAGACAAGGTAC 193619 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 ||||||||| || ||||| || || ||||| |||| ||||| || ||| |||||||| Sbjct 193618 GTCCATCTTCTAGTTGCTTACCAGCAAAGATCAGACTTTGCTGATCAGGAGGAATTCCTT 193559 Query 199530 C 199530 | Sbjct 193558 C 193558 >seq6 Length=30479472 Score = 98.7 bits (108), Expect = 2e-15 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 |||| ||||| | ||| || | || |||||||| || | | ||| ||||| |||||| | Sbjct 3763748 GAAGCCTCAGCATAAGATGAGGGGTGGACTCCTTCTGAATGCTGTGGTCAGACAAAGTAC 3763689 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 |||||||||||| ||||| || || ||||| || | ||||| || ||| |||||||| Sbjct 3763688 ATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTT 3763629 Query 199530 CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589 | ||||| ||||| || | ||| ||||| | | ||| | |||| || Sbjct 3763628 CCTTATCCTGGATCTTGGCTTTTGCATTTTCTGTAGTGTCCGAGGGTTCAGCCTCCAGCG 3763569 Query 199590 TGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | | ||||| || || || ||||| | ||||| || Sbjct 3763568 TAACAGTCTTCCCTGTAAGGGTTTTTATGAAAATCTG 3763532 >seq90 Length=7592057 Score = 95.1 bits (104), Expect = 3e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| | || ||||| || ||||| |||| |||||||||| || || | ||||| Sbjct 464132 CAGGACCAAATGCAGAGTGGATTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCCATC 464073 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 |||||||||||||||||| ||||| || | ||||||||| || Sbjct 464072 TTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGG 464031 >seq279 Length=2078848 Score = 93.3 bits (102), Expect = 1e-13 Identities = 124/170 (73%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| | | ||||| || |||| ||| ||||||| | | | | |||||| Sbjct 1038289 AGGACCAGGTGCTGGGCTGACTCTTTCTGGATGTTATAGTCAGAAAGAATGCAGCCATCT 1038348 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCG-GAAAAATTCCTTCTCGCTC 199536 ||||||||||| || || |||||||| | ||||||||| | | |||| |||||| || Sbjct 1038349 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGAGGGAAATACCTTCT-TATC 1038407 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 ||| ||||| ||||| ||| | |||||| | | ||||| |||| Sbjct 1038408 CTGGATCTTGGCCTTCATATTTTCAATGGTGTCACTGGGCTCTACTTCCA 1038457 >seq118 Length=6029945 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/208 (70%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 199430 AGAGTCGACTCCTTTTGGACGTTGTAGT--CAGCCAAAGTCCTTCCATCTTCCAGCTGCT 199487 || || ||||| || |||| ||| | | ||| | ||| | |||||||||||||||| Sbjct 3917703 AGGGTGGACTCTTTCTGGATATTGCAATATCAGAAAGAGTGCAGCCATCTTCCAGCTGCT 3917762 Query 199488 TTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTT 199547 | || || |||||||| | || |||||| ||| ||| |||||| |||| |||| Sbjct 3917763 TGCCTGCAAAGATGAGCCTCTACTGGTCAGGAGGAATGCCTTCTTTATCCTTGTTCTTAG 3917822 Query 199548 GCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGA 199607 |||||| || | |||||| | || | ||||| ||||| ||||| || || | Sbjct 3917823 CCTTCACATTCTCAATGGTGTCACTGAGCTCCATCTCCAAGGTGATAGTCTTGCCAGTCA 3917882 Query 199608 GAGTTTTCACAAAAATTTGGTACATTTT 199635 | || |||||||| || || |||||| Sbjct 3917883 GGGTCTTCACAAAGATCTG---CATTTT 3917907 >seq26 Length=15501076 Score = 91.5 bits (100), Expect = 3e-13 Identities = 150/216 (69%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 ||| ||||| || || || | || |||||||| || | ||||||||||| | ||| | Sbjct 10001824 AAGCCTCAGCACCAGATGAAAGGTGGACTCCTTCTGAATGTTGTAGTCAGACTCAGTACG 10001883 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 || ||||||||| ||||| | || ||||| || | || || | ||| ||||||||| Sbjct 10001884 TCAATCTTCCAGTTGCTTATCAGCAAAGATTAGTCTTTGATGATTAGGAGGAATTCCTTC 10001943 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 ||||| ||||| ||| || ||| | || || || ||| || |||| || Sbjct 10001944 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATC---TGGTTCAACCTCCATTGT 10002000 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | || || ||||| || ||||| || Sbjct 10002001 AATAGTCTTCTCTGTAAGGGTTTTTACGAAAATCTG 10002036 >seq14 Length=21378024 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || ||||| || |||| |||||| || | | ||| | ||||| Sbjct 6329942 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCC 6329883 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || || || || || ||||||||||| || || || || || || Sbjct 6329882 TCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCT 6329823 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| ||| || || || |||| |||||| | | || || || | ||||| || Sbjct 6329822 TGAAT-TTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGT 6329764 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || |||||||| || || Sbjct 6329763 CTTGCCCGTCAGGGTCTTCACAAAGATCTG 6329734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178733045121361