Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq14 111 2e-19
seq90 98.7 1e-15
seq118 84.2 2e-11
>seq14
Length=21378024
Score = 111 bits (122), Expect = 2e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| |||| | || | ||||| |||| || ||| || ||||| ||||| || |
Sbjct 6329959 TGCCACCTCGCAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTG 6329900
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| |||||||| | || || ||||| ||||| || ||||||| |||||||| || | |
Sbjct 6329899 AGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTG 6329840
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | || ||||||||| || || |||| || | | ||||| || | || |
Sbjct 6329839 GGATGCCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAA 6329780
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| || | |||||||| ||||||||||| || || |||||||| |||||
Sbjct 6329779 CCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731
>seq90
Length=7592057
Score = 98.7 bits (108), Expect = 1e-15
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| || || || |||| |||| ||||| || ||||| |||||||||||||| ||
Sbjct 464146 CCCCCCCTCAAGCGCAGGACCAAATGCAGAGTGGATTCCTTCTGGATATTGTAGTCAGAC 464087
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| |||||| | || || |||||||| ||||| || |||| | ||||||||| | ||
Sbjct 464086 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 464027
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| || ||||||||| |||||| ||||| || | | ||||| || | |||||
Sbjct 464026 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 463967
Query 46547 TC 46548
||
Sbjct 463966 TC 463965
>seq118
Length=6029945
Score = 84.2 bits (92), Expect = 2e-11
Identities = 138/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGT--CGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCG 46459
||| || ||||||||| | | | || ||||||| | || || ||||||||||| ||
Sbjct 3917711 CTCTTTCTGGATATTGCAATATCAGAAAGAGTGCAGCCATCTTCCAGCTGCTTGCCTGCA 3917770
Query 46460 AATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGC 46519
|| || | | || |||||| | || | || || || ||| || |||| ||| |
Sbjct 3917771 AAGATGAGCCTCTACTGGTCAGGAGGAATGCCTTCTTTATCCTTGTTCTTAGCCTTCACA 3917830
Query 46520 GTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579
|| | | ||||| || |||| |||| ||||| || ||||| ||||| || ||
Sbjct 3917831 TTCTCAATGGTGTCACTGAGCTCCATCTCCAAGGTGATAGTCTTGCCAGTCAGGGTCTTC 3917890
Query 46580 ACAAAGATTTGCATTTTG 46597
|||||||| |||||||||
Sbjct 3917891 ACAAAGATCTGCATTTTG 3917908
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565150201613160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |