Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq14 132 5e-26 seq126 114 1e-20 seq90 109 5e-19 seq59 104 2e-17 seq13 93.3 4e-14 >seq14 Length=21378024 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| ||||||||| |||| || ||| ||| Sbjct 6329731 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 6329790 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| ||||| | ||||| ||||| || || | || || Sbjct 6329791 GACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATCAG 6329850 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||||||||||||||||| || | ||||| ||| || |||||| Sbjct 6329851 CAGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGATTACAAC 6329910 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || | || ||||| |||||||| || || |||| ||| Sbjct 6329911 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGGC 6329958 >seq126 Length=5838822 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | |||||||| ||||||||| |||| || ||| ||| Sbjct 680738 ATGCAGATCTTTGTGAAGACCATGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 680797 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| ||||| | ||||| ||||| || || | || || Sbjct 680798 GACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATCAG 680857 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || |||||||||||||| || | | ||| ||| || |||| | Sbjct 680858 CAGCGTCTAATATTTGCAGGCAAACAGCTGGAGGATGGCCACACTCTCTCAGATTACAGC 680917 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || | || ||||| |||||||| || || |||| ||| Sbjct 680918 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGGC 680965 >seq90 Length=7592057 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || ||| | ||||| ||| |||| || | || || || Sbjct 464004 AAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGAAAG 464063 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | ||||||||| |||||||| ||||| |||||| | || |||||| Sbjct 464064 CAGCTGGAAGATGGGCGCACCCTGTCTGACTACAATATCCAGAAGGAATCCACTCTGCAT 464123 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||||| || || Sbjct 464124 TTGGTCCTGCGCTTGAGGGGGGG 464146 >seq59 Length=10161055 Score = 104 bits (114), Expect = 2e-17 Identities = 364/561 (65%), Gaps = 22/561 (4%) Strand=Plus/Minus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 ||||| ||| ||||| || | || || |||||||| ||| || ||||| ||| | Sbjct 9902978 ACATCGGGCA-GCAAATTCAGAGTGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAA 9902920 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | || | ||| ||||| || | || ||||||||||||| | || || ||| | Sbjct 9902919 ATGTGAGGCCAGGCATCAGTTC-----TTATGAGCCAAAATATTGATGCAAATGAGCCAG 9902865 Query 133007 AAAAGAAGA---CGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 ||||||||| | ||| |||| || | || | || | | | | || |||| Sbjct 9902864 AAAAGAAGATTTCTCCCGTAGTGGCCAAGA---CTACAACACGTTTTCTGTAGGTAGCTT 9902808 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 ||||| | |||| | || || || || || || | || || || |||||| ||| Sbjct 9902807 CTTTGTCCCCAGTCCAACACAAGGCACAGTCTGCTTTCTTCTTCACCCAAGGCATCATTT 9902748 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCT-TCCGAGGAACGC---ACGTAGGTGTCGATG 133179 | ||||| | | | || ||| || || ||||| | ||| |||| || Sbjct 9902747 CAATGGCACTGGAGA----GAAATTCCCTGTCTTAGGAATTTTTAATGTAAATGTCAATA 9902692 Query 133180 AGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCAC 133239 ||| ||| ||||| || |||| ||| ||||| || | ||| ||||| | || || Sbjct 9902691 AGGAGACCATATATTTCAGAATGTATGTTTTCCATAGCAACTTGGAAGCCACAGAAACAG 9902632 Query 133240 CGCGCCTCGACCACCTGCACTTCTTGAGCGAAA-CGCTCGACCAGATTTTCGTTGACGAT 133298 | || || | | || || ||||| || ||| |||| ||||||||||| | | || Sbjct 9902631 CCGGCTTCTATAATTTGAACCTCTTG-GCTAAATCGCTGCACCAGATTTTCACTTGCTAT 9902573 Query 133299 GCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT 133358 ||| || | || | || || || || || || || |||| | || | || Sbjct 9902572 GCCATCACGTGCTTCAAAGAAAGCTAGAACATGTGATATAAAATATCATTCCTCAGGCTT 9902513 Query 133359 CAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGA 133418 || | || || || | |||||||||| || ||||||||||| | ||||| || || Sbjct 9902512 CAGGGCCTGCCGGTGCTGACTGTCCTTGGAAAGATCCACCTCCTCCGCTGTCCAGAAGGA 9902453 Query 133419 CGCCTCGGCTTTTTTGTACAT 133439 |||||||||||| || ||||| Sbjct 9902452 CGCCTCGGCTTTCTTATACAT 9902432 >seq13 Length=21495731 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 || || || || || || || || | ||||| ||||||||| |||| |||||| ||| Sbjct 9191702 ATTCAGATCTTTGTGAAGACCCTGATAGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 9191761 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| |||| | | ||| | ||||| || || | || || Sbjct 9191762 GACACCATCGAGAATGTCAAAGCAAAATTTCAAGACCAGGAGGGCATCCCACCTGATCAG 9191821 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 |||| || || | || || |||||||| || || || ||||| ||| || |||||| Sbjct 9191822 CAGCATCTGATATTTGCAGGTAAACAGCTAGAGGATGACCGCACTCTCTCAGATTACAAC 9191881 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGG 38467 ||||| || || | || || | |||||||| | ||||||| Sbjct 9191882 ATCCAGAAAGAGTCCACTCTATACTTGGTGCTTTGCCTGAGAGG 9191925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500094754286720