Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq642 91.5 1e-13 seq259 86.0 5e-12 >seq642 Length=209117 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | |||||||| || ||| | ||||||| ||||| || | | |||| Sbjct 47062 CCTCATGATGCACATGACATGTGTATCTCTGCTCTTCCCCAGCAGGCACCACCACAGCTG 47121 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| ||||||||||| || || || ||||| ||||| || ||| | | Sbjct 47122 CCCACTTCTGGAAAGTTCCATCCCCTGCAGGCCTGGTCTCCACAAGCTCCATGTTCTGAA 47181 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCC 523 || | | ||| | || | ||||| || ||||| || ||| ||| |||||||| Sbjct 47182 TCTGGTCCTCCCCATCCCTCTGCCAGGTCATGGTGATCTCCTTAGGGTAGAAGCC 47236 >seq259 Length=2316233 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | |||||||| || ||| | ||||| | | ||||| || | | |||| Sbjct 2040564 CCTCATGATGCACATGACATGTGTATCTCTGCTCCTCCTCAGCAGGCACCACCACAGCTG 2040505 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || || || ||||| ||||| || ||| | | Sbjct 2040504 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACAAGCTCCATGTTCTGAA 2040445 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 || | | ||| | || | ||||| || | ||| || ||| ||| |||||||| || Sbjct 2040444 TCTGGTCCTCCCCATCCTTCTGCCAGGTCAGGGTGATCTCCTTAGGGTAGAAGCCCAAGG 2040385 Query 529 CCCAACA 535 |||| || Sbjct 2040384 CCCAGCA 2040378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397686688108248