Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq118 118 2e-21 seq90 118 2e-21 seq353 113 1e-19 seq14 113 1e-19 seq126 109 1e-18 seq13 107 4e-18 seq26 95.1 3e-14 seq178 86.0 1e-11 >seq118 Length=6029945 Score = 118 bits (130), Expect = 2e-21 Identities = 155/208 (75%), Gaps = 10/208 (5%) Strand=Plus/Plus Query 194941 AGAGTGGACTCTTTTTGAATATTGTAAT--CGGCAAGAGTTCTCCCATCTTCGAGCTGCT 194998 || ||||||||||| || |||||| ||| | | |||||| | |||||||| ||||||| Sbjct 3917703 AGGGTGGACTCTTTCTGGATATTGCAATATCAGAAAGAGTGCAGCCATCTTCCAGCTGCT 3917762 Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGT-CTTGAATTTTT 195057 | ||||| ||||| || | | ||||| ||||||||||||||||| | |||| || || Sbjct 3917763 TGCCTGCAAAGATGAGCCTCTACTGGTCAGGAGGAATGCCTTCTTTATCCTTG--TTCTT 3917820 Query 195058 TG-CTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 | ||| || ||||||||||||| | || | |||| || | ||| | ||||| || Sbjct 3917821 AGCCTTCACATTCTCAATGGTGTCACTGAGC--TCCATCTCCAAGGTGATAGTCTTGCCA 3917878 Query 195115 GTCAAAGTTTTTACGAACACTTGCATTT 195142 |||| || || || || | ||||||| Sbjct 3917879 GTCAGGGTCTTCACAAAGATCTGCATTT 3917906 >seq90 Length=7592057 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || |||||||| || || || |||||||| || | || || | ||||||||| |||||| Sbjct 464122 TGCAGAGTGGATTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGC 464063 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| || | || |||||||| || ||||| || |||||||| || || Sbjct 464062 TTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTG 464003 Query 195058 TGCTTGACGTTCTCAATGGTGTC 195080 |||||| |||||||||||||| Sbjct 464002 GCCTTGACATTCTCAATGGTGTC 463980 >seq353 Length=1223491 Score = 113 bits (124), Expect = 1e-19 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || |||||||| || | |||||| | |||||||| Sbjct 241199 ACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCAGAAAGAGTACGGCCATCTTCC 241258 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| || |||||||||||||| || || Sbjct 241259 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGG 241318 Query 195052 ATTTT 195056 || || Sbjct 241319 ATCTT 241323 >seq14 Length=21378024 Score = 113 bits (124), Expect = 1e-19 Identities = 150/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| || || |||||||| | ||||| | ||||| || ||||| Sbjct 6329934 GTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCCTCCAGCTG 6329875 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || || || || || || || || || ||||| || |||||||||||||| Sbjct 6329874 TTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGAATTTT 6329815 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||||| ||||| |||||||| ||| || || || ||||| | ||||| || Sbjct 6329814 GGCTTTGACATTCTCGATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTCTTGCC 6329758 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || || || | ||||| Sbjct 6329757 CGTCAGGGTCTTCACAAAGATCTGCAT 6329731 >seq126 Length=5838822 Score = 109 bits (120), Expect = 1e-18 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| || || ||||||| | ||||| ||||| || ||||| Sbjct 680941 GTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAGAGAGTGTGGCCATCCTCCAGCTG 680882 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||||| || || || || || || || || || ||||| || |||||||||||||| Sbjct 680881 TTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGAATTTT 680822 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||||| ||||| |||||||| ||| || || || ||||| | ||||| || Sbjct 680821 GGCTTTGACATTCTCGATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTCTTGCC 680765 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || || || | ||||| Sbjct 680764 CGTCATGGTCTTCACAAAGATCTGCAT 680738 >seq13 Length=21495731 Score = 107 bits (118), Expect = 4e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 194941 AGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTA 195000 |||||||||||||| || || |||||||| | ||||| | |||| || ||||| ||| Sbjct 9191901 AGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTCTAGCTGTTTA 9191842 Query 195001 CCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGC 195060 ||||| || || || | || || || || || ||||| || | |||||||| |||| Sbjct 9191841 CCTGCAAATATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGTCTTGAAATTTTGCT 9191782 Query 195061 TTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| ||||| |||||||| ||| || || || ||||| | ||||| ||| || Sbjct 9191781 TTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTATC 9191725 Query 195118 AAAGTTTTTACGAA 195131 | || || || || Sbjct 9191724 AGGGTCTTCACAAA 9191711 >seq26 Length=15501076 Score = 95.1 bits (104), Expect = 3e-14 Identities = 152/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 || |||| || || |||| |||||||| || ||||| ||||| || | ||| | Sbjct 10001825 AGCCTCAGCACCAGATGAAAGGTGGACTCCTTCTGAATGTTGTAGTCAGACTCAGTACGT 10001884 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 | |||||| || |||||| | || ||||| |||| ||| || | |||||||| ||||| Sbjct 10001885 CAATCTTCCAGTTGCTTATCAGCAAAGATTAGTCTTTGATGATTAGGAGGAATTCCTTCC 10001944 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || || || || | ||| || || | ||| Sbjct 10001945 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCTGG---TTCAACCTCCATTGTA 10002001 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| |||| | ||||||||||| | ||||| Sbjct 10002002 ATAGTCTTCTCTGTAAGGGTTTTTACGAAAATCTGCAT 10002039 >seq178 Length=4226165 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/209 (69%), Gaps = 16/209 (8%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||||| | ||||||||||| | ||||| | ||||| || Sbjct 1706332 ACCAGGTGCAGTATGAACTCTTT--GGATATTGTAATCTGAGAGAGTGCAGCCATCCTCC 1706389 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || || || || | ||| || |||||||| |||||||| Sbjct 1706390 AGCTGTTTGCCCGCAAATATCAGACATTGCTG----------ATGCCTTCCTTGTCTTGC 1706439 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||||| |||||| ||||||| || ||| || | ||||| | ||||| Sbjct 1706440 ATTTTGGCTTTGACATTCTCAGTGGTGTC---AC-TTCGACCTTGAGGGTGATGGTCTTG 1706495 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||| ||||| || || | ||||| Sbjct 1706496 CCCATCATGGTTTTCACAAAGATCTGCAT 1706524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109304151246461