Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq118 118 2e-21
seq90 118 2e-21
seq353 113 1e-19
seq14 113 1e-19
seq126 109 1e-18
seq13 107 4e-18
seq26 95.1 3e-14
seq178 86.0 1e-11
>seq118
Length=6029945
Score = 118 bits (130), Expect = 2e-21
Identities = 155/208 (75%), Gaps = 10/208 (5%)
Strand=Plus/Plus
Query 194941 AGAGTGGACTCTTTTTGAATATTGTAAT--CGGCAAGAGTTCTCCCATCTTCGAGCTGCT 194998
|| ||||||||||| || |||||| ||| | | |||||| | |||||||| |||||||
Sbjct 3917703 AGGGTGGACTCTTTCTGGATATTGCAATATCAGAAAGAGTGCAGCCATCTTCCAGCTGCT 3917762
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGT-CTTGAATTTTT 195057
| ||||| ||||| || | | ||||| ||||||||||||||||| | |||| || ||
Sbjct 3917763 TGCCTGCAAAGATGAGCCTCTACTGGTCAGGAGGAATGCCTTCTTTATCCTTG--TTCTT 3917820
Query 195058 TG-CTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114
| ||| || ||||||||||||| | || | |||| || | ||| | ||||| ||
Sbjct 3917821 AGCCTTCACATTCTCAATGGTGTCACTGAGC--TCCATCTCCAAGGTGATAGTCTTGCCA 3917878
Query 195115 GTCAAAGTTTTTACGAACACTTGCATTT 195142
|||| || || || || | |||||||
Sbjct 3917879 GTCAGGGTCTTCACAAAGATCTGCATTT 3917906
>seq90
Length=7592057
Score = 118 bits (130), Expect = 2e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| |||||||| || || || |||||||| || | || || | ||||||||| ||||||
Sbjct 464122 TGCAGAGTGGATTCCTTCTGGATATTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGC 464063
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || || ||||| || | || |||||||| || ||||| || |||||||| || ||
Sbjct 464062 TTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTG 464003
Query 195058 TGCTTGACGTTCTCAATGGTGTC 195080
|||||| ||||||||||||||
Sbjct 464002 GCCTTGACATTCTCAATGGTGTC 463980
>seq353
Length=1223491
Score = 113 bits (124), Expect = 1e-19
Identities = 100/125 (80%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || ||||||||||| || |||||||| || | |||||| | ||||||||
Sbjct 241199 ACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCAGAAAGAGTACGGCCATCTTCC 241258
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| ||||| ||||| || | || ||||| || |||||||||||||| || ||
Sbjct 241259 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGG 241318
Query 195052 ATTTT 195056
|| ||
Sbjct 241319 ATCTT 241323
>seq14
Length=21378024
Score = 113 bits (124), Expect = 1e-19
Identities = 150/207 (72%), Gaps = 6/207 (3%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || ||||||||||| || || |||||||| | ||||| | ||||| || |||||
Sbjct 6329934 GTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCCTCCAGCTG 6329875
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|| || || || || || || || || || || || ||||| || ||||||||||||||
Sbjct 6329874 TTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGAATTTT 6329815
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113
||||| ||||| |||||||| ||| || || || ||||| | ||||| ||
Sbjct 6329814 GGCTTTGACATTCTCGATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTCTTGCC 6329758
Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140
|||| || || || || | |||||
Sbjct 6329757 CGTCAGGGTCTTCACAAAGATCTGCAT 6329731
>seq126
Length=5838822
Score = 109 bits (120), Expect = 1e-18
Identities = 149/207 (72%), Gaps = 6/207 (3%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || ||||||||||| || || ||||||| | ||||| ||||| || |||||
Sbjct 680941 GTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAGAGAGTGTGGCCATCCTCCAGCTG 680882
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|| ||||| || || || || || || || || || ||||| || ||||||||||||||
Sbjct 680881 TTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGAATTTT 680822
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113
||||| ||||| |||||||| ||| || || || ||||| | ||||| ||
Sbjct 680821 GGCTTTGACATTCTCGATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATGGTCTTGCC 680765
Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140
|||| || || || || | |||||
Sbjct 680764 CGTCATGGTCTTCACAAAGATCTGCAT 680738
>seq13
Length=21495731
Score = 107 bits (118), Expect = 4e-18
Identities = 141/194 (73%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 194941 AGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTA 195000
|||||||||||||| || || |||||||| | ||||| | |||| || ||||| |||
Sbjct 9191901 AGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTCTAGCTGTTTA 9191842
Query 195001 CCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGC 195060
||||| || || || | || || || || || ||||| || | |||||||| ||||
Sbjct 9191841 CCTGCAAATATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGTCTTGAAATTTTGCT 9191782
Query 195061 TTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||||| ||||| |||||||| ||| || || || ||||| | ||||| ||| ||
Sbjct 9191781 TTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTATC 9191725
Query 195118 AAAGTTTTTACGAA 195131
| || || || ||
Sbjct 9191724 AGGGTCTTCACAAA 9191711
>seq26
Length=15501076
Score = 95.1 bits (104), Expect = 3e-14
Identities = 152/218 (70%), Gaps = 3/218 (1%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|| |||| || || |||| |||||||| || ||||| ||||| || | ||| |
Sbjct 10001825 AGCCTCAGCACCAGATGAAAGGTGGACTCCTTCTGAATGTTGTAGTCAGACTCAGTACGT 10001884
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
| |||||| || |||||| | || ||||| |||| ||| || | |||||||| |||||
Sbjct 10001885 CAATCTTCCAGTTGCTTATCAGCAAAGATTAGTCTTTGATGATTAGGAGGAATTCCTTCC 10001944
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|| || || || || ||| || || || || || || | ||| || || | |||
Sbjct 10001945 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCTGG---TTCAACCTCCATTGTA 10002001
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||||| |||| | ||||||||||| | |||||
Sbjct 10002002 ATAGTCTTCTCTGTAAGGGTTTTTACGAAAATCTGCAT 10002039
>seq178
Length=4226165
Score = 86.0 bits (94), Expect = 1e-11
Identities = 145/209 (69%), Gaps = 16/209 (8%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || ||||||| | ||||||||||| | ||||| | ||||| ||
Sbjct 1706332 ACCAGGTGCAGTATGAACTCTTT--GGATATTGTAATCTGAGAGAGTGCAGCCATCCTCC 1706389
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||| || || || || || || | ||| || |||||||| ||||||||
Sbjct 1706390 AGCTGTTTGCCCGCAAATATCAGACATTGCTG----------ATGCCTTCCTTGTCTTGC 1706439
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
||||| ||||| |||||| ||||||| || ||| || | ||||| | |||||
Sbjct 1706440 ATTTTGGCTTTGACATTCTCAGTGGTGTC---AC-TTCGACCTTGAGGGTGATGGTCTTG 1706495
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||| ||||| || || | |||||
Sbjct 1706496 CCCATCATGGTTTTCACAAAGATCTGCAT 1706524
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109304151246461
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |