Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq14 136 3e-27
seq126 127 1e-24
seq13 100 2e-16
seq90 93.3 3e-14
seq1607 82.4 5e-11
>seq14
Length=21378024
Score = 136 bits (150), Expect = 3e-27
Identities = 158/211 (75%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| |||||||| ||||| || || || || | || |||| |||
Sbjct 6329939 ACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCCTCC 6329880
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| || |||||||| || || ||||| || | || | ||||||||||| |
Sbjct 6329879 AGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGA 6329820
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
|| || |||||| || || || | |||| || |||||| |||| ||| ||||| |
Sbjct 6329819 ATTTTGGCTTTGAC--ATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCT 6329762
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| ||||| || ||||||||||||||||||||
Sbjct 6329761 TGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731
>seq126
Length=5838822
Score = 127 bits (140), Expect = 1e-24
Identities = 156/211 (74%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| |||||||| ||| | || || || || | | |||| |||
Sbjct 680946 ACCAAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAGAGAGTGTGGCCATCCTCC 680887
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| || ||||||||||| || ||||| || | || | ||||||||||| |
Sbjct 680886 AGCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGA 680827
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
|| || |||||| || || || | |||| || |||||| |||| ||| ||||| |
Sbjct 680826 ATTTTGGCTTTGAC--ATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCT 680769
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| ||||| | ||||||||||||||||||||
Sbjct 680768 TGCCCGTCATGGTCTTCACAAAGATCTGCAT 680738
>seq13
Length=21495731
Score = 100 bits (110), Expect = 2e-16
Identities = 150/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
||||||| | ||| |||||||| ||||| || || || || | || ||||| ||
Sbjct 9191910 ACCAAGTATAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTCT 9191851
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| || |||||||| || | ||||| || | || | ||||||| ||| |
Sbjct 9191850 AGCTGTTTACCTGCAAATATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGTCTTGA 9191791
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
| || |||||| || || || | |||| || ||| || |||| ||| ||||| |
Sbjct 9191790 AATTTTGCTTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCT 9191733
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || | || ||||||||||||||||| ||
Sbjct 9191732 TGCCTATCAGGGTCTTCACAAAGATCTGAAT 9191702
>seq90
Length=7592057
Score = 93.3 bits (102), Expect = 3e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| |||||||| | || ||||| || | ||| ||| ||||| || || ||||| ||
Sbjct 464146 CCCCCCCTCAAGCGCAGGACCAAATGCAGAGTGGATTCCTTCTGGATATTGTAGTCAGAC 464087
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
||| | || |||| |||||||| ||||||||||| || || | ||||||||| | ||
Sbjct 464086 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 464027
Query 34875 ACCCCCTCCTTGTC 34888
| |||||||||||
Sbjct 464026 ATGCCCTCCTTGTC 464013
>seq1607
Length=19272
Score = 82.4 bits (90), Expect = 5e-11
Identities = 157/229 (69%), Gaps = 7/229 (3%)
Strand=Plus/Minus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
||||||| ||| || |||||||| | ||| ||| ||||| ||| | ||||| ||
Sbjct 6405 CCTCCCCACAAGTGCAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGCTGTAGTCAGAG 6346
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
||| | | |||| ||||| ||| || ||||| || | | ||| |||| | ||
Sbjct 6345 AGGGTGCAAACATCTTCCAGAATTTTGCCAGCAAAGATCAACCTGTGCAGGTCAGGGGGG 6286
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTA--TCGATTCACCGGCCTCAA 34932
| | ||||| | | ||||| ||||| || || | || |||| || ||| |
Sbjct 6285 ATGTCTTCCTTTTGG---ATCTTTGCCTTGAC--ATTCTCAGTGGAGTCACTGGGCTCCA 6231
Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || | ||| ||||| || ||||| || |||||||| |||||||||||
Sbjct 6230 CCTCTAGGGTGATGGTCTTACCCGTCAGGGTCTTCACCAAGATCTGCAT 6182
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324584211360024
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |