Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq536 311 1e-79 seq260 205 1e-47 seq59 192 7e-44 seq58 181 1e-40 seq299 152 6e-32 seq131 145 9e-30 seq64 120 3e-22 seq2 120 3e-22 seq11673 114 1e-20 seq30 107 2e-18 >seq536 Length=337149 Score = 311 bits (344), Expect = 1e-79 Identities = 638/940 (68%), Gaps = 40/940 (4%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 |||||| ||| ||||||| | ||||||||| ||| || || | ||| ||||||||| Sbjct 201731 TTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTG--TTGGATTCGACATCACTCCCATT 201788 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 || ||||| ||| | |||| || |||||||| |||||||| || |||| ||| ||| Sbjct 201789 TTCTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAGTGAAATATTC 201848 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| | ||||||||||| ||| || | || || || || || | | | | Sbjct 201849 TCCATAAAGTTAAATGGATTTTCTACTTTGAAAATCTTGTTAAAGCCCAGCTTCAGCATA 201908 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 || ||||| || ||||||| ||| || ||||||| | |||||||| || |||| Sbjct 201909 AGCCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATTAGC 201968 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 || |||| | || ||||| || || || || ||||| || | || | || ||||| Sbjct 201969 TTCTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGCAT-TG--ATAATT 202025 Query 18910 GATAC---AACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCA 18966 | | | ||||| | || || || || || ||||| | ||||| || ||| Sbjct 202026 GTTTCTTTTACTCTCTGCTCTGATGGTTTGTGAAGCAGGTGTTTGAGCATCAGGCAGGCA 202085 Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026 || ||||| |||| ||||| ||||| || || | |||||| |||||||| | |||||| Sbjct 202086 AAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGC 202145 Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCT 19086 |||||||||| ||| | ||| ||||||||||| || | Sbjct 202146 ATCAGTCCTCGTTTCT----------------------TGAGCCAGAAAAGAAGATTCTG 202183 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCAT 19146 || | || ||||| || || | | ||||||||| |||| || || | |||| | Sbjct 202184 TCCATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCAAA 202243 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 | || ||||| || ||||| || ||||| |||||||| || | | ||| || ||| Sbjct 202244 TGCAAGGCCCA--TGGCTTTCTTCTTCACACAAGGCATTGTTTCAGTGGCATTGAAGAGA 202301 Query 19207 TACATACGCTCATCTGTA-TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265 | | | | | || | ||||||| ||| | || || | | ||| |||||||| || Sbjct 202302 -AATTCCCTTTCTTTGAAGTCTTTAATATAAGTGTCAATAAGAAGACTATACATTTCAGA 202360 Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325 ||| || ||||| || || || || || || || |||| | |||||||| || || || Sbjct 202361 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAAC 202420 Query 19326 TTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAA 19385 ||| | |||| || |||||||| || || ||||| | ||||| || ||| | || Sbjct 202421 TTCTTGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCACCTGCCGCAGAGAA 202480 Query 19386 TGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAA 19444 || | | || | ||||||| || ||| || | | || | | || ||| | | || Sbjct 202481 AGCCAGAATGTGGAT-ATAAAATATTGTTCCTCAG-GCTTCAGGGCTTCCCAGTGCTGAA 202538 Query 19445 TATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACA 19504 | || | || | | | || || ||| |||||||||| |||||||| ||||| ||| ||| Sbjct 202539 TGTCCCTGGA-AGAGCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACACA 202597 Query 19505 TGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | | || ||| || | | || |||||||| || || || Sbjct 202598 TCTGCCGGATACCATGGTGTTCCATAGGAAAGATGACCAA 202637 >seq260 Length=2306558 Score = 205 bits (226), Expect = 1e-47 Identities = 627/945 (66%), Gaps = 32/945 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | |||| ||||| || || || || ||| |||||| Sbjct 2179936 TTAGAAGTCAGCATCCAAGGTAAAATAATTCCCTG--TTGGATTTGACATCTCTCCCACC 2179993 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| || | ||| | || |||||||| ||| | || | || | | | ||| Sbjct 2179994 CTCTGATACTCACCTACTTTCTTCTCAAAGAAGTTAATCTTGTCTTCCATTAA-ATATTC 2180052 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAA-TTC-TAATA 18787 |||||||| ||||||| ||||| ||| | | | || | || || | ||| | ||| Sbjct 2180053 TCCATAAAGTCAAATGAATTTTCTACTCTGAAAACCTTGCTAAAGCCCAGCTTCATCATA 2180112 Query 18788 GTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTA 18847 | || | || || |||| |||||| ||||||| | || || || || | | Sbjct 2180113 --AACCTGTGTGCCACGAATTCAATATACTGCTTCATCAAAGTGCAGTTTATCCCAGTGA 2180170 Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATA- 18906 | || ||||| | || || | | || || ||||||| | || || | ||||| | Sbjct 2180171 ACTTCACAGGCAAAGCCTCCATGATGAACTCCTGTTCTAAGCTGACAGCAT-TGATAAAT 2180229 Query 18907 ATAGATACAACTCTAT-CTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGC 18965 || | ||||| | || || | || || ||| || ||||| ||||||| || || Sbjct 2180230 ATTTCTTTTACTCTCTGCTCCAAT-GGTTTGTGTAGCAGGTGTTTGAACATCAGGCAAGC 2180288 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 | | ||| || ||| ||||| ||||| || || | |||| | |||| | || ||||| Sbjct 2180289 AGAGTCATAAAGTAAACCCTCATCTCTGCTAATAAGTTCACTGGAAACT--TAGGCCAGG 2180346 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085 ||||| ||| ||| || ||| ||||||| || |||| || || | ||||| | || Sbjct 2180347 CATCAATCCCTGTTTCTTGAACTAGAATATTGATTCAAAAGAAACATAGAAGAAGTTTCC 2180406 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCA 19145 ||| || || |||| || || | | ||||| || |||| || || | |||||| Sbjct 2180407 TTCCACAGCCACAAAGGCTACAACACATTCTCTGTAGGTAGCTTCTTTGTCCCCAATCCA 2180466 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 | || || ||| || || || |||||| | |||||||| || || | ||| || || Sbjct 2180467 ATGCAAGACCTAATTTGCTTTTTTCTTTACATAAGGCATTGTTTCAATGGCATTGAAGAG 2180526 Query 19206 ATACATACGCTCATCTGT---ATCTTTAACATATGCATCTATCAATAAACTGTACATTTC 19262 | | | | || ||| | |||||| || | || || | | ||| |||||||| Sbjct 2180527 AAA--TTCCCTT-TCTTTGAAATCTTT----TAAGTGTCAATAAGGAGACTATACATTTC 2180579 Query 19263 TGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTG 19322 |||| | ||||| || || || || || | || ||||| ||||||| || || Sbjct 2180580 ACAATGTAGTTTTTC-ATGGCAATTTGGAAGTCATAGAAACAGTGAACTTCTGTAATTTG 2180638 Query 19323 TACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAA 19382 ||||| | |||| || |||||||||||||| ||||| |||||||| |||||||| Sbjct 2180639 AACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAA 2180698 Query 19383 -AAATGC-TAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCC-AATC 19439 |||| | |||| ||| ||||||| | ||| || || || | | |||| | | Sbjct 2180699 GAAATTCATAAT--ATGAGACATAAAATATCATTCCTCAGA-TTTCAGGGCTTCCTAGTG 2180755 Query 19440 ATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTT 19499 ||| || || || | | | || || || |||| |||| ||| | || || || || Sbjct 2180756 CAGAATGTCCTTGGAAATAGCCACCTCCCCATATGTCAAAAAGGAACCTTCAGCCTTCTT 2180815 Query 19500 ATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | | || | ||| |||||| | ||| |||||||| | ||||| Sbjct 2180816 AGAAATCTGCCAAATATCATGGTATCTGATAGGAAAGAAGACAAA 2180860 >seq59 Length=10161055 Score = 192 bits (212), Expect = 7e-44 Identities = 613/938 (65%), Gaps = 32/938 (3%) Strand=Plus/Minus Query 18617 AATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCATTACTCCCATTTTTTGAT 18676 ||||| || |||| | ||| ||||||||| | | | ||| |||||||| | |||| Sbjct 9903308 AATCAGCACCCAAGGTAAAGGAATTCTCTGTGT-ATTCTACATCACTCCCATCCTCTGAT 9903250 Query 18677 ATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC--AT 18734 | ||| | ||| | ||||||||||||| || || ||| |||| |||||| || Sbjct 9903249 ACTCGCCTACTAT-----CAAAGAAATTAGTCTTCCCTTCTGATGAAC--CATTCCCCAT 9903197 Query 18735 AAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCT 18794 ||| |||||||||||| || | | | || || || | || |||| | || || Sbjct 9903196 AAAGACAAATGGATTTTCCACTCTGAAAACCTTCTTAAAGTCCAACTCTAGCATGAGCCT 9903137 Query 18795 ATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAAC 18854 || || || |||| ||| | |||||| | ||| ||| | || || | || | Sbjct 9903136 GTCTGCCACGAATTCAATGAACTGCTTCATCCAAGTACAGTTCCTCCCAATGAGCTTCAT 9903077 Query 18855 AGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAATAGATA 18913 || | || || || || | || ||||| || | || || | ||| || || || Sbjct 9903076 GGGCAAGGCCTCAGTGAGGAGCTCCTGTTCCATCCTGACAGCAT-TGACGATTATTTATT 9903018 Query 18914 CAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCAC 18973 ||||| | || || | || ||| || | || ||||| || ||||| ||| Sbjct 9903017 TTACTCTCTGCTCTGATGGTGTGTGTAGCAGGTATTCGGACATCGGGCA-GCAAATTCAG 9902959 Query 18974 AATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTC 19033 | |||| ||||||||||| || || | |||||| |||||||| | ||||||||||| Sbjct 9902958 AGTGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAG-- 9902901 Query 19034 CTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC--TAC 19091 || || | | ||| ||||| || |||||||| ||||||||||| || || | || Sbjct 9902900 ---TTCTTATGAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATTTCTCCCGTAG 9902844 Query 19092 TGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAG 19151 || || || | || | | || || || |||| || || | | |||| || Sbjct 9902843 TG--GCCAAGACTACAACACGTTTTCTGTAGGTAGCTTCTTTGTCCCCAGTCCAACACAA 9902786 Query 19152 TGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACAT 19211 || || || || ||||| || || || ||||| | || || | | | | ||| | Sbjct 9902785 GGCACAGTCTGCTTTCTTCTTCACCCAAGGCATCATTTCAATGGCACTGGAGAGAAATTC 9902726 Query 19212 ACGCTCATCTGTATCTTTAACATATGCATCTATCAATAA----ACTGTACATTTCTGAAT 19267 | || | | || |||| ||| | | ||||||| || || ||||| |||| Sbjct 9902725 CCTGTCTTAGGAATTTTTA----ATGTAAATGTCAATAAGGAGACCATATATTTCAGAAT 9902670 Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 | || ||||| ||||| | || || || | ||||| | |||||| | || || || | Sbjct 9902669 GTATGTTTTCCATAGCAACTTGGAAGCCACAGAAACAGCCGGCTTCTATAATTTGAACCT 9902610 Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 | | ||||| | |||| ||||||| | |||| ||||||| ||| |||| || | Sbjct 9902609 CTTGGCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCACGTGCTTCAAAGAAAG 9902550 Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATAT 19447 ||| |||||| ||||||| | ||| || | | | | | || | | | | | Sbjct 9902549 CTAGAACATGTGATATAAAATATCATTCCTCAGGCTTCAGGGCCTGCCGGTGCTGACTGT 9902490 Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507 | || || | ||| || || || ||||||| || || ||||| ||||| |||||||| | Sbjct 9902489 CCTTGGAAAGATCCACCTCCTCCGCTGTCCAGAAGGACGCCTCGGCTTTCTTATACATTT 9902430 Query 19508 TCCATATATCACGAT-ATTGTATAGGAAATATAACAAA 19544 ||| |||||| | | |||| | || ||| || |||| Sbjct 9902429 GCCAAATATCATGGTGATTG-ACAGCAAACATGGCAAA 9902393 >seq58 Length=10378366 Score = 181 bits (200), Expect = 1e-40 Identities = 571/874 (65%), Gaps = 52/874 (6%) Strand=Plus/Plus Query 18623 CATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATTTTTTGATATTC 18680 ||||||| | || |||||||||| || || | || ||||| || || ||||| || Sbjct 1968475 CATCCAAGGTAAGAGAATTCTCTG--TTGGATTCAACACCACTCCAATCTTCTGATACTC 1968532 Query 18681 GGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATC 18740 | ||||| || |||||||| ||||| || || || | ||| ||| ||||||| || Sbjct 1968533 AACTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATAATGTC 1968592 Query 18741 AAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGC 18800 || |||||||| ||| | | || | | | || | || | | || || || || Sbjct 1968593 AAGTGGATTTTCTACTCTGAAAATCTCGATAGAGCCCAGTTTCAGCATAAGCCTGTCTGC 1968652 Query 18801 TACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAG 18860 |||||||| ||| | ||||||| | || ||||| || || | || ||||| | Sbjct 1968653 TACAAATTCAATGCACTGCTTCATCAAAGAGCAGTTCATCCCAATGAGCTTCACAGGCAA 1968712 Query 18861 TGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCT 18920 || | || || || || |||||||| | || | ||||| | || | | | Sbjct 1968713 GGCCTTGGTGAGGAACTCCTGTTCTATCCTAACAAAAT-TGATA-ATTACTTTTATCC-- 1968768 Query 18921 ATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAG 18980 ||||| || || ||| | | ||| ||||| | || |||||||||| Sbjct 1968769 -TCTTCTCCCACAGTGTGTAGCAAGTATTTGAACATTGAGCAGGCAAAATCAC------- 1968820 Query 18981 TCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttt 19040 || ||||| || || | |||||| |||||||| | |||||||||||| | || ||| Sbjct 1968821 ----TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATCAGCCGTCATTT 1968876 Query 19041 ttttAACCAGAATATA--GAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCA 19098 || | ||||||||| || ||||| || ||||||||||| || |||| || ||| Sbjct 1968877 CTTAAGTCAGAATATATTGATGCAAAAGAACCAGAAAAGAAGATTTCTTCCACATTAGCA 1968936 Query 19099 AAAGCAACTAGTCTT--TCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCC 19156 || || || || | |||||| || ||| | |||| ||| |||| Sbjct 1968937 AAGGCTAC--ATCATGCTCTCCACAAATAGACTTTTTATCCTGATTCCA----------- 1968983 Query 19157 AATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATAC--G 19214 |||| | ||||| || ||||| ||||| | || | ||| | ||||| || | Sbjct 1968984 AATCTGTTTTCTTCTTCACACAAGGCATCATTTCAGTGCCATTGA--AGATAAATTCTTT 1969041 Query 19215 CTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATT 19274 || | | || |||| ||| | || | |||||||| ||| | ||||| || || Sbjct 1969042 TTCTTTGGAATTTTTA----ATGTGACAATAAGGAAACTGTATATTACAGAATGTATTTT 1969097 Query 19275 TTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACA 19334 | |||| || || || ||||| || ||||| |||||||| || || | ||| | Sbjct 1969098 TCCTATGGCAATTTGGAATCCATAGAAACAGTGGGCTTCTGTAATTTGAATTTCTTGGCT 1969157 Query 19335 AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATAC 19394 |||| | ||||| ||||||| | ||| ||||||| |||| |||| || | || Sbjct 1969158 AAATTGCTTCACCAATTTTTCATGTATTATGCCATCAC---CTGCTAAAA--GCCAGAAC 1969212 Query 19395 ATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATATCTTTAG 19453 |||| ||||||| | | || || || || | | || |||| | ||| | | Sbjct 1969213 ATGTGCTATAAAATCTCTCTCCTC-AAGCTTCAGGGCTTCCCAAGGTTGAATGTTCCTGA 1969271 Query 19454 ATAAATCTACTTCTTCAACTGTCCAAAAAGAAGC 19487 | | ||||||||| | |||||||||||| ||||| Sbjct 1969272 AAAGATCTACTTCCTTAACTGTCCAAAAGGAAGC 1969305 >seq299 Length=1791600 Score = 152 bits (168), Expect = 6e-32 Identities = 314/459 (68%), Gaps = 10/459 (2%) Strand=Plus/Minus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | |||| |||| ||||||||||| ||||| || ||||| || || |||| Sbjct 1083428 TGATACTCTGAAACTTTTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 1083369 Query 18733 ATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGT 18792 ||||||||||| ||||||| | | | | | | ||| |||||| | ||| | |||| | Sbjct 1083368 ATAAAATCAAAGGGATTTTCTGCCTGAAAAACCTTTGAGAATCCAAGTTCCATAAGTAAT 1083309 Query 18793 CTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTA 18852 || || |||| ||||| |||||| | |||||| | |||| ||||| | || | | Sbjct 1083308 CTTTCAGCTATAAATTCAATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCCA 1083249 Query 18853 ACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGAT 18912 || || | | ||||| | ||| || || || || || || || | | | | | | | Sbjct 1083248 ACTGGCAAGTCTTCTGTTAAAAACTCCTGCTCAATTTTGACAGCAT-TAACA-ATGATCT 1083191 Query 18913 ACAACTCTATCTTCATTAGGAG-GGTATAGAAGATGT--TTAAACATCAAACATGCAAAA 18969 | | | | ||| | | || ||| | | || | ||||| | || ||||| Sbjct 1083190 CCCTCACCCTTTTCTTCTGAAGTCTTATTTACTAAGTACTGAAACACTAGGCAAGCAAAG 1083131 Query 18970 TCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATC 19029 ||| | | ||| | || ||||| | |||| ||||| |||||||| | ||||| || Sbjct 1083130 TCATAGAGAAGTTCTTCATCTCTGTTGATCAGCTCATTGGAAAATGTGAGTCCAGGGATG 1083071 Query 19030 AGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCT 19089 | ||||| || ||||||||||| |||| |||||| ||||| | ||||| || ||||| Sbjct 1083070 GGACCTCTCTTCTTTAACCAGAAAATAGTAGCAAA-GATCCTCAGAAGAAAATTCCTTCC 1083012 Query 19090 ACTG--CTGCAAAAGCAACTAGTCTTTCTCCATAACTAG 19126 || | ||| | || || | |||||| ||| || ||| Sbjct 1083011 ACAGAACTG--ATGGCCACCACTCTTTCCCCAAAAGTAG 1082975 >seq131 Length=5549739 Score = 145 bits (160), Expect = 9e-30 Identities = 238/342 (70%), Gaps = 1/342 (0%) Strand=Plus/Minus Query 19047 CCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAAC 19106 ||||||||| || |||| || ||||||||||| || ||||| | | ||||| || | Sbjct 3233251 CCAGAATATTGACACAAAAGAACCAGAAAAGAAGATTCCTTCCGCAGTGGCAAAGGCTAA 3233192 Query 19107 TAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTT 19166 | |||| || |||| || || || |||||| ||| |||||||| || || Sbjct 3233191 AACATGTTCTTG-TAGGTAGCCTCTTTGTTCCCAATCCAACTCAAGGCCCAATCTGCTTT 3233133 Query 19167 CTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATC 19226 | | || ||||| ||||| | || |||| ||| | ||| | | || | | ||| Sbjct 3233132 CCTCTTCACACAAGGCATCCTTTCAATAGCATTGGAGAGAAATTCCCTTTCTTTAGAATC 3233073 Query 19227 TTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCAT 19286 ||||| || | || || | | ||| ||||||| ||||| || |||||| | || | Sbjct 3233072 TTTAATGTAAGTGTCAATAAGGAGACTCTACATTTTAGAATGCATGTTTTCTGTGGCAAC 3233013 Query 19287 CTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGAC 19346 ||| || || || ||||| | ||||||| || || ||||| | |||| ||| || Sbjct 3233012 CTGGAAGCCATAGAAACAGCCCACTTCTGTAATTTGAACTTCTTGGCTAAATTATTCCAC 3232953 Query 19347 CAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGC 19388 |||||||||||| |||| |||||||| |||||||| || || Sbjct 3232952 CAAATTTTCATTTGCTATGCCATCACTTGCTGCAAAGAAAGC 3232911 >seq64 Length=9676502 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| |||||||| | |||||||||||||||| ||| | Sbjct 6351547 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 6351488 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| |||||||| || ||||||||||| || || || || || ||||| | Sbjct 6351487 TGAGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGG 6351428 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 6351427 CTACAACACGTTCTCC 6351412 >seq2 Length=46620681 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || |||| |||||| |||||||| | |||||||| || ||||| || ||| Sbjct 41377775 TCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCTTT 41377716 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || ||||| || || ||||| || Sbjct 41377715 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCC 41377656 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 41377655 ACCACTCTTTCCCC 41377642 >seq11673 Length=1157 Score = 114 bits (126), Expect = 1e-20 Identities = 117/150 (78%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT-TC--ATTAGAATTCATTACTCCCAT 18668 |||||| ||| ||||||| | ||||||||| ||| || ||| || ||| |||||||| Sbjct 221 TTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTCGGATTTGA---CATCACTCCCAT 277 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | ||||| ||| | ||||| || |||||||| ||||| || || |||| ||| ||| Sbjct 278 CCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATT 337 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATT 18758 |||||||| ||||||||||||| ||| || Sbjct 338 CTCCATAAAGTCAAATGGATTTTCTACTTT 367 >seq30 Length=14751797 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||||||||| | ||| ||| ||||||| | |||||| || | Sbjct 817615 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGTTCAGCAATATGTATGT 817674 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || |||||||| || |||||||| | | || | Sbjct 817675 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCTGCTGCCATTTTGAGAACAGTTT 817734 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| || || ||||||| ||| |||| ||| || || Sbjct 817735 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTAAGGTCATCAGG 817783 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| ||||| || || || ||||| || || Sbjct 820284 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATGGAC 820343 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | || ||||||||||| || |||||||| | |||| | ||| || Sbjct 820344 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 820403 Query 47448 TTTCTTACTCCATA 47461 |||||||| ||||| Sbjct 820404 TTTCTTACACCATA 820417 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| ||||| ||||||| |||| || | | ||| Sbjct 838233 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGTGTAAACCACCTCTCAGAAAGAAGGTTA 838292 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 ||||||||||| ||| ||| || || || ||| || || | |||||| | ||| ||| Sbjct 838293 TATGTTTCAATTGCAGCATCAATGTCTTCTTTATGAATCCCCACAGATACCCTCATCAAC 838352 Query 48720 ATATATTGAGGTCTTTCA 48737 |||| ||| ||||||||| Sbjct 838353 ATATGTTGTGGTCTTTCA 838370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562021089948120