Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq259 224 8e-53
seq557 134 1e-25
seq362 123 2e-22
seq1127 120 2e-21
seq654 120 2e-21
seq487 113 4e-19
seq1181 109 4e-18
seq455 104 2e-16
seq6 104 2e-16
seq8380 100 2e-15
seq19 100 2e-15
seq11036 98.7 8e-15
seq74 98.7 8e-15
seq26 96.9 3e-14
seq30 95.1 1e-13
seq10070 91.5 1e-12
seq73 89.7 4e-12
seq291 87.8 1e-11
seq353 86.0 5e-11
seq324 86.0 5e-11
>seq259
Length=2316233
Score = 224 bits (248), Expect = 8e-53
Identities = 420/606 (69%), Gaps = 27/606 (4%)
Strand=Plus/Plus
Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050
||| ||||| || || || || ||||| ||| |||||| || || | || |||| ||
Sbjct 1742893 AGCCATAGGCATCGACTTGGGTACCACCTATTCTTGTGTAGGGGTGTTCCAGCATGGCAA 1742952
Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110
|| || || ||||||||||| || || ||| | || || || ||||| | |||||
Sbjct 1742953 GGTGGAGATCATTGCCAATGACCAGGGCAACCGCACCACCCCCAGCTATGTGGCCTTCAC 1743012
Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTAC 550167
||| || |||| | |||| |||||||| ||| | || ||||| || ||||||
Sbjct 1743013 GGATACAGAACGGCTTATTGGGGATGCAGCCAAAAACCAGGTAGCCA-TG--AATCCTCA 1743069
Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227
|| ||| | |||||||| |||||| | ||||| || | ||||||||| | ||| ||
Sbjct 1743070 GAACACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAATTTAATGATCCTGTTGTGCA 1743129
Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTA--TATT 550285
| |||||||||| | ||||||||| ||| | | |||| || || || | | |
Sbjct 1743130 GTCAGATATGAAACTTTGGCCTTTTCAAGTGATCAATGAAGGAGGCAAGCCCAAGGTGCT 1743189
Query 550286 GAAGCTACTCATGAAGGATCTGTTAAACAA---TTTTCACCAGAACAAATTTCATCTATG 550342
| | | || || |||| | ||| || || | || ||| ||||||| || |||
Sbjct 1743190 GGTG-TCCT-ATAAAGG---GGAGAAAAAAGCTTTCTACCCTGAAGAAATTTCTTCAATG 1743244
Query 550343 GTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCA 550402
|| || | || ||||| |||| || |||||| | || || | || ||||
Sbjct 1743245 GTATTGACTAAGATGAAGGAAACTGCAGAGGCTTTTTTAGGCCACCTGATCACCAATGCT 1743304
Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462
|| || |||||||| || ||||| |||||||| ||||| || || || || ||||| ||
Sbjct 1743305 GTGATCACTGTACCGGCCTATTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCAGGT 1743364
Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522
||||| ||||| ||||| || | || ||||||||||| || |||||||| ||||
Sbjct 1743365 GTGATTGCAGGACTCAATGTGCTAAGAATCATCAATGAACCCACAGCTGCTGCCATTGCG 1743424
Query 550523 TATGGACTTGATAA-ACATAATGATCA---AGAACTTAATGTACTCATCTTTGATT---G 550575
||||| | ||||| || | ||| ||| | |||||||||||||||||| |
Sbjct 1743425 TATGGCTTAGATAAGGCA----GGTCAGGGAGAGCGACATGTACTCATCTTTGATTTGGG 1743480
Query 550576 TGGAGG 550581
||||||
Sbjct 1743481 TGGAGG 1743486
Score = 131 bits (144), Expect = 1e-24
Identities = 441/681 (65%), Gaps = 8/681 (1%)
Strand=Plus/Plus
Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972
|| |||||||| ||||||| | | || ||||| | || ||| ||| | | ||| |
Sbjct 1743671 ACCGCTTGCGAGCGAGCCAAGAGGACCCTGTCATCCAGCACCCAAGCCAATCTGGAAATT 1743730
Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032
|||||| | | ||| || ||||| | | || |||| | || ||| ||||||||
Sbjct 1743731 GATTCACTTTATGAAGGCATTGACTTCTACACATCTATCACCAGAGCCCGGTTTGAAGAG 1743790
Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCA 552092
| ||| | || || ||||| || | ||||| || ||| ||| | | ||||| |
Sbjct 1743791 CTGTGTGCAGACCTGTTTAGGGGTACCCTGGAACCTGTGGAAAAAGCTCTTCGAGATGCC 1743850
Query 552093 AAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCT 552152
||||| ||||| | ||| | ||||| ||||| | || || || || || | || |||
Sbjct 1743851 AAGATGGATAAGGCTAAAATCCATGACATTGTTTTAGTCGGGGGCTCCACTCGCATCCCT 1743910
Query 552153 AAAATTCGCGAAATG-TTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAA 552211
|| | | || || || || || |||| ||||| | | || | || | ||
Sbjct 1743911 AAGGTGCAGAAACTGCTTCAGGACT-ATTTTAATGGACGTGATCTCAACAAGAGCATCAA 1743969
Query 552212 TCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGG---ACA 552268
||| |||||||| || |||||||| || ||| | || ||||| ||| || ||| |||
Sbjct 1743970 TCCTGATGAGGCAGTAGCCTATGGGGCTGCAGTACAGGCAGCCATT-TTGATGGGTGACA 1744028
Query 552269 AACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328
|| |||||| |||| || | | | | || || | ||||| ||||| || ||
Sbjct 1744029 AATC--TGAAAAGGTACAGGATCTGCTTTTGTTGGACGTGGCCCCTCTGTCTCTAGGGTT 1744086
Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388
||| |||| ||| || | |||||| || || | | ||| | || || || |||
Sbjct 1744087 AGAGACAGCTGGGGGCGTGATGACTGTGCTGATTAAGCGTAATTCCACCATCCCCACTAA 1744146
Query 552389 AAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTT 552448
| | | | || | || ||||||||||| ||| ||| || || || | |
Sbjct 1744147 GCAGACACAGATCTTCACCACATATTCAGATAACCAACCTGGGGTGCTGATCCAGGTATA 1744206
Query 552449 TGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGG 552508
||| || ||| | | || || || || | ||| || ||| | | ||
Sbjct 1744207 TGAGGGTGAACGGGCTATGACACGTGACAACAACCTACTGGGGCGCTTTGACCTGACTGG 1744266
Query 552509 TATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAA 552568
|| |||||||| || | ||||| || || ||||| || || || || || ||||||||
Sbjct 1744267 AATACCTCCTGCACCCAGGGGAGTTCCTCAGATTGAGGTGACCTTTGACATTGATGCCAA 1744326
Query 552569 TGGAATTTTGAATGTGACTGC 552589
||||||| | ||||| || ||
Sbjct 1744327 TGGAATTCTTAATGTCACAGC 1744347
>seq557
Length=306283
Score = 134 bits (148), Expect = 1e-25
Identities = 165/223 (74%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 550315 ATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGC 550374
|||| | |||||| |||| || |||| || | | ||||||||| | || || ||
Sbjct 61160 ATTTGCTCCAGAAGAAATCTCTGCTATTATTCTCACTAAAATGAAAGAGACTGCTGAGGC 61219
Query 550375 TTTTGTTGGTCAAGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACT 550433
|| | |||| |||||| |||| ||||||| | |||||||| || | |||||||||
Sbjct 61220 TTAT-TTGGGAAAGAAGGTTACCCATGCAGTTGTTACTGTACCGGCCTGTTTTAATGATG 61278
Query 550434 CACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTA 550493
| || | ||| | || |||||||||||| ||||||||| || |||||| | | || |
Sbjct 61279 CCCAGCAGCAACCAACCAAAGATGCTGGAACTATTGCTGGCCTGAATGTTATGAGGATAA 61338
Query 550494 TCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
||||||| ||||| || ||||| |||| ||||| || |||||
Sbjct 61339 TCAATGAGCCTACAGCAGCTGCTATTGCTTATGGCCTGGATAA 61381
>seq362
Length=1080710
Score = 123 bits (136), Expect = 2e-22
Identities = 167/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 550309 TAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGC 550368
|||| |||| | |||||| ||||||| ||||| || | | ||||||||| | || |
Sbjct 903937 TAAAACATTTGCTCCAGAAGAAATTTCTGCTATGATTCTCACTAAAATGAAAGAGACTGT 903996
Query 550369 CAGTGCTTTTGTTGGTCAAGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTA 550427
|||| | | || |||||| |||| ||||| | | |||| ||||| |||||||
Sbjct 903997 GGAGGCTTATTT--GTGAAGAAGGTTACCCATGCAATTGTCACTGAACCAGTCTATTTTA 904054
Query 550428 ATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTC 550487
|||| | || | ||||| || |||||||||||| ||||||||| || |||||| |
Sbjct 904055 ATGATGC-CAGTGGCAAGCAACCAAAGATGCTGGAACTATTGCTGGCCTGAATGTTATGA 904113
Query 550488 GTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
| || |||||||| ||||| || ||||| |||| ||| | || ||||
Sbjct 904114 GGATCATCAATGAGCCTACAGCAGCTGCTATTGCTTATTGCCTGTATAA 904162
Score = 111 bits (122), Expect = 1e-18
Identities = 163/227 (72%), Gaps = 4/227 (2%)
Strand=Plus/Plus
Query 550309 TAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGC 550368
|||| |||| | |||||| |||| || ||||| || | | ||||||||| | || ||
Sbjct 312917 TAAAACATTTGCTCCAGAAGAAATCTCTGCTATGATTCTCACTAAAATGAAAGAGACTGC 312976
Query 550369 CAGTGCTTTTGTTGGTCAAGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTA 550427
|||| | | || |||||| |||| ||||| | | ||| ||||| |||||||
Sbjct 312977 GGAGGCTTATTT--GTGAAGAAGGTTACCCATGCAATTGTTACTAAACCAGTCTATTTTA 313034
Query 550428 ATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTC 550487
|||| | || | ||||| || |||||||||||| ||||||| | || |||||| |
Sbjct 313035 ATGATGC-CAGTGGCAAGCAACCAAAGATGCTGGAACTATTGCTTGCCTGAATGTTATGA 313093
Query 550488 GTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGAT 550534
|| |||||||| ||||| || ||||| |||| ||| | || |||
Sbjct 313094 AGATCATCAATGAGCCTACAGCAGCTGCTATTGCTTATTGCCTGGAT 313140
Score = 102 bits (112), Expect = 7e-16
Identities = 162/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 550309 TAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGC 550368
|||| |||| | |||| | |||| || ||||| || | | ||||||||| | || |
Sbjct 545037 TAAAACATTTGCTCCAGGAGAAATCTCTGCTATGATTCTCACTAAAATGAAAGAGACTGT 545096
Query 550369 CAGTGCTTTTGTTGGTCAAGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTA 550427
| |||| | | || |||||| |||| || || | | ||| ||||| |||| |
Sbjct 545097 GAAGGCTTATTT--GTGAAGAAGGTTACCCATACAATTGTTACTTAACCAGTCTATTGAA 545154
Query 550428 ATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTC 550487
|||| | || | ||||| || |||||||||||| ||||||||| || | |||| |
Sbjct 545155 ATGATGC-CAGTGGCAAGCAACCAAAGATGCTGGAACTATTGCTGGCCTGAGTGTTATGA 545213
Query 550488 GTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
| || |||||||| ||||| | ||||| |||| ||| | ||||||||
Sbjct 545214 GGATCATCAATGAGCCTACAGAAGCTGCTATTGCTTATTGCCTTGATAA 545262
>seq1127
Length=50553
Score = 120 bits (132), Expect = 2e-21
Identities = 164/225 (73%), Gaps = 3/225 (1%)
Strand=Plus/Minus
Query 550311 AACA-ATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369
|||| |||| | |||||| |||| || |||| || | | | ||||||| | || |
Sbjct 10230 AACACATTTGCTCCAGAAGAAATCTCCGCTATTATTCTCACTATAATGAAAGAGACTTCT 10171
Query 550370 AGTGCTTTTGTTGGTCAAGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428
|||| | |||| |||||| |||| ||||||| | ||||||||||| | ||||||
Sbjct 10170 GAGGCTTATTTTGGA-AAGAAGGTTACCCATGCAGTTGTTACTGTACCAGCCTGTTTTAA 10112
Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488
||| | || | ||||| || |||||||||||| ||||||||| || |||||| | |
Sbjct 10111 TGATGCCCAGCAGCAAGCAACCAAAGATGCTGGAACTATTGCTGGCCTGAATGTTATCAG 10052
Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGA 550533
|| |||||||| ||||| | ||||| |||| ||| | || ||
Sbjct 10051 GATCATCAATGAGCCTACAGAAGCTGCTATTGCTTATTGCCTGGA 10007
>seq654
Length=198565
Score = 120 bits (132), Expect = 2e-21
Identities = 167/228 (73%), Gaps = 6/228 (3%)
Strand=Plus/Minus
Query 550311 AACA-ATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369
|||| |||| | |||||| |||| || ||||| |||| | ||||||||| | || ||
Sbjct 161633 AACATATTTGCTCCAGAAGAAATCTCTGCTATGATTTTCACTAAAATGAAAGAGACTGCT 161574
Query 550370 AGTGCTTTTGTTGGTCAAGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428
|||| | | || |||||| |||| ||||||| | |||| ||||| ||| ||||
Sbjct 161573 GAGGCTTATTTGGG--AAGAAGGTTACC-ATGCAGTTGTTACTGAACCAGTCTATATTAA 161517
Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488
||| | || | ||||| || |||||||||||| ||||||||| || |||||| | |
Sbjct 161516 TGATGC-CAGTGGCAAGCAACCAAAGATGCTGGAAATATTGCTGGCCTGAATGTTATGAG 161458
Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
|| |||||||| ||||| || ||||| ||| ||| | || ||||
Sbjct 161457 GATCATCAATGAGCCTACAGCAGCTGCTAATGCTTATTGCCTGAATAA 161410
>seq487
Length=469708
Score = 113 bits (124), Expect = 4e-19
Identities = 156/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381
||| || ||||||| |||| |||| | | ||||||| | || || |||| | ||
Sbjct 325189 CCATAAGAAATTTCTGGTATGATTTTCACTATAATGAAAGAGACTGCTGAGGCTTAT-TT 325131
Query 550382 GGTCAAGAAGTT-ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACG 550440
|| |||||||| ||| ||||||| | || |||||||| ||||||||||| || |
Sbjct 325130 GGGAAAGAAGTTTACGCATGCAGTTGTTACAGTACCAGCCTATTTTAATGATGGCCAGCA 325071
Query 550441 TCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGA 550500
||||| || ||||||||| || |||||||| || || ||| | | || ||||||||
Sbjct 325070 ACAAGCAACCAAAGATGCTAGAACTATTGCTGTCCTGAAAGTTATGAGAATCATCAATGA 325011
Query 550501 ACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
||||| || ||| | || | ||| | || |||||
Sbjct 325010 GCCTACAGCAGCTCCTATTACTTATAGCCTGGATAA 324975
>seq1181
Length=43409
Score = 109 bits (120), Expect = 4e-18
Identities = 163/228 (71%), Gaps = 14/228 (6%)
Strand=Plus/Plus
Query 550311 AACA-ATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369
|||| |||| | |||||| |||| || |||| |||| | ||||||||| |
Sbjct 13054 AACACATTTGCTCCAGAAGAAATCTCTGCTATAATTTTCACCAAAATGAAAAAG------ 13107
Query 550370 AGTGCTTTTGTTGGTCAAGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428
|||| | | || |||||| |||| ||||||| | |||| ||||| ||||||||
Sbjct 13108 ---GCTTATTTGGG--AAGAAGGTTACCCATGCAGTTGTTACTGAACCAGTGTATTTTAA 13162
Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488
||| | || | |||| || |||||||||||| ||||||| | || |||||| | |
Sbjct 13163 TGATGC-CAGTGGGAAGCAACCAAAGATGCTGGAACTATTGCTAGCCTGAATGTTATGAG 13221
Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
|| |||||||| ||||| || ||||| |||| ||| | || |||||
Sbjct 13222 GATCATCAATGAGCCTACAGCAGCTGCTATTGCTTATTGCCTGGATAA 13269
Score = 95.1 bits (104), Expect = 1e-13
Identities = 101/131 (77%), Gaps = 2/131 (2%)
Strand=Plus/Plus
Query 550386 AAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAA 550444
||||| ||||| ||||||| | |||| ||||| ||||||||||| | || | ||
Sbjct 12138 AAGAATGTTACCCATGCAGTTGTTACTGAACCAGTCTATTTTAATGATGC-CAGTGGGAA 12196
Query 550445 GCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCT 550504
|| || |||||||||||| ||||||||| || |||||| | | || |||||||| |||
Sbjct 12197 GCAACCAAAGATGCTGGAACTATTGCTGGCCTGAATGTTATGAGGATCATCAATGAGCCT 12256
Query 550505 ACTGCTGCTGC 550515
|| || |||||
Sbjct 12257 ACAGCAGCTGC 12267
>seq455
Length=570085
Score = 104 bits (114), Expect = 2e-16
Identities = 153/212 (72%), Gaps = 5/212 (2%)
Strand=Plus/Minus
Query 563263 AGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322
|| |||||||||||||| || || ||| ||||| |||| | || | | ||||
Sbjct 193670 AGAACAAGATGAAGGGTGGACTCCTTCTAAATGTTGTAGTCAGACAAGGTACGTCCATCT 193611
Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382
|| ||||| || || ||||| || || |||||||||||||||||||||||||| ||||
Sbjct 193610 TCTAGTTGCTTACCAGCAAAGATCAGACTTTGCTGATCAGGAGGAATTCCTTCCTTATTC 193551
Query 563383 TGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTT 563442
|| || || ||||| || || ||| || | | || || |||||||| |||
Sbjct 193550 TGGATCTTGGCTTTTATATTTTCTATAGTA-AAGGTTCA--ACCTT-GAGAGTAATAGTC 193495
Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
|| || |||| ||||| | |||||| |||||
Sbjct 193494 TTCCCCATAAGGGTTTT-ATGAAAATCTGCAT 193464
>seq6
Length=30479472
Score = 104 bits (114), Expect = 2e-16
Identities = 147/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 563268 AAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAG 563327
||||||| |||| || || ||| ||| |||| | ||| | | |||||| ||
Sbjct 3763735 AAGATGAGGGGTGGACTCCTTCTGAATGCTGTGGTCAGACAAAGTACATCCATCTTCCAG 3763676
Query 563328 TTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAAT 563387
||| || || ||||| || ||||||||||||||||||||||||||||| ||||| || ||
Sbjct 3763675 TTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGAT 3763616
Query 563388 TTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACC 563447
|| |||| | || | || || | | | | || || |||||||| || ||
Sbjct 3763615 CTTGGCTTTTGCATTTTCTGTAGTGTCCGAGGGTTCAGCCTCCAGCGTAACAGTCTTCCC 3763556
Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474
||||| ||||| | |||||| |||||
Sbjct 3763555 TGTAAGGGTTTTTATGAAAATCTGCAT 3763529
>seq8380
Length=1491
Score = 100 bits (110), Expect = 2e-15
Identities = 115/152 (76%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 550386 AAGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAA 550444
|||||| |||| |||| || | |||| ||||| ||||||||||| | || | ||
Sbjct 462 AAGAAGGTTACCCATGCGGTTGTTACTGAACCAGTCTATTTTAATGATAC-CAGTGGGAA 404
Query 550445 GCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCT 550504
|| || |||||||||||| ||||||||| || |||||| | | || |||||||| |||
Sbjct 403 GCAACCAAAGATGCTGGAACTATTGCTGGCCTGAATGTTATGAGGATCATCAATGAGCCT 344
Query 550505 ACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
|| || ||||| |||| ||| | || |||||
Sbjct 343 ACAGCAGCTGCTATTGCTTATTGCCTGGATAA 312
>seq19
Length=19581918
Score = 100 bits (110), Expect = 2e-15
Identities = 90/113 (80%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| ||||||| | ||||||||||| ||||||||||| | || || ||||| ||
Sbjct 13351170 GTTACCCATGCAGTTGTTACTGTACCAGCCTATTTTAATGATGCCCAGCGGCAAGCAACC 13351111
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503
|||||||||||| ||||||||| || |||||| | | || |||||||| ||
Sbjct 13351110 AAAGATGCTGGAACTATTGCTGGCCTGAATGTTATGAGGATCATCAATGAGCC 13351058
>seq11036
Length=1096
Score = 98.7 bits (108), Expect = 8e-15
Identities = 95/121 (79%), Gaps = 1/121 (1%)
Strand=Plus/Plus
Query 550416 CAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGAC 550475
|||| ||||||||||| | || | ||||| || |||||||||||| ||||||||| |
Sbjct 1 CAGCCTATTTTAATGATGC-CACTGGCAAGCAACCAAAGATGCTGGAACTATTGCTGGCC 59
Query 550476 TTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATA 550535
| |||||| | | || |||||||| ||||| || ||||| |||| ||||| || ||||
Sbjct 60 TGAATGTTATGAGAATCATCAATGAGCCTACAGCAGCTGCTATTGCTTATGGCCTGGATA 119
Query 550536 A 550536
|
Sbjct 120 A 120
>seq74
Length=8649107
Score = 98.7 bits (108), Expect = 8e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| |||| || | || || ||||| || || ||||| || || ||||| || ||
Sbjct 7579841 GTTACCAATGCTGTGGTCACAGTGCCAGCTTACTTCAATGATTCTCAGCGTCAGGCAACC 7579782
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510
|||||||| ||| |||||||| || ||||| ||| | || |||||||| || ||||||
Sbjct 7579781 AAAGATGCCGGAACCATTGCTGGTCTCAATGTACTTAGGATAATCAATGAGCCAACTGCT 7579722
Query 550511 GCTGCACTTGCATATGG 550527
||||| |||| || ||
Sbjct 7579721 GCTGCTATTGCTTACGG 7579705
Score = 93.3 bits (102), Expect = 3e-13
Identities = 231/347 (67%), Gaps = 4/347 (1%)
Strand=Plus/Minus
Query 551894 AGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTAC 551953
|||| | || ||||| | ||||| || |||||||| || || | || || || | ||
Sbjct 7579387 AGCTGTCCGACGTCTCCGTACTGCATGTGAAAGAGCTAAGCGTACCCTCTCTTCCAGCAC 7579328
Query 551954 TCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTC 552013
||| ||| |||||| | ||||| | | ||| ||||| || | |||| | ||| |
Sbjct 7579327 TCAGGCCAGTATTGAGATTGATTCTCTCTATGAAGGAATCGACTTCTATACCTCCATTAC 7579268
Query 552014 GAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGA 552073
| || ||||||||| | | |||| || || | || | || || |||||
Sbjct 7579267 CCGTGCTCGATTTGAAGAGTTGAATGCTGACCTGTTCCGTGGCACCCTCGACCCTGTAGA 7579208
Query 552074 ACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133
| ||| | | ||||| | || | || || || | | ||||| ||||| || || ||
Sbjct 7579207 AAAAGCTCTTCGAGATGCCAAACTAGACAAGTCACAGATCCATGATATTGTACTGGTGGG 7579148
Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAA--TGTTAAGTTCTTATTTCAATGGTAAA 552191
||| ||||| | || || || |||| ||| | | || ||| || |||||| ||
Sbjct 7579147 TGGTTCTACTCGTATCCCCAAGATTCA-GAAGCTTCTGCAGGACTTCTT-CAATGGAAAG 7579090
Query 552192 AAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGC 552238
|| | ||| | || | || || |||||||||||||| ||||||||
Sbjct 7579089 GAACTGAATAAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGC 7579043
Score = 86.0 bits (94), Expect = 5e-11
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057
|| || ||| | || ||||| || |||||| ||||| | || |||| ||||| ||
Sbjct 7580736 GGCATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTCTTCCAGCATGGAAAAGTGGAG 7580677
Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117
|| |||||||||||||| || ||| ||||||| ||| ||||| | || || || ||
Sbjct 7580676 ATAATTGCCAATGATCAGGGGAACCGAACTACCCCAAGCTATGTCGCCTTTACTGACACA 7580617
Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCA 550149
|||| || | || ||||| ||||| ||||
Sbjct 7580616 GAACGATTGATCGGCGATGCTGCAAAGAATCA 7580585
>seq26
Length=15501076
Score = 96.9 bits (106), Expect = 3e-14
Identities = 150/212 (71%), Gaps = 3/212 (1%)
Strand=Plus/Plus
Query 563263 AGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322
|| || ||||||| ||| || || ||| ||||| |||| ||| | | |||||
Sbjct 10001831 AGCACCAGATGAAAGGTGGACTCCTTCTGAATGTTGTAGTCAGACTCAGTACGTCAATCT 10001890
Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382
|| ||||| || | ||||| || |||||||| |||| ||||||||||||||| |||||
Sbjct 10001891 TCCAGTTGCTTATCAGCAAAGATTAGTCTTTGATGATTAGGAGGAATTCCTTCCTTATCC 10001950
Query 563383 TGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTT 563442
|| || || ||||| || || ||||| | | | || || | |||| |||
Sbjct 10001951 TGGATCTTGGCCTTTACATTTTCTATAGTATCTGGTTCA--AC-CTCCATTGTAATAGTC 10002007
Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
|| | ||||| ||||| |||||||| |||||
Sbjct 10002008 TTCTCTGTAAGGGTTTTTACGAAAATCTGCAT 10002039
>seq30
Length=14751797
Score = 95.1 bits (104), Expect = 1e-13
Identities = 150/211 (71%), Gaps = 7/211 (3%)
Strand=Plus/Minus
Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326
||||||| |||||| || || ||| ||||| |||| || | | | |||||| |
Sbjct 13753776 CAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGATAAA-TACACCCATCTTCCA 13753718
Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386
||| || || ||||| || ||||||||||||| |||||||||| ||| ||||||| |
Sbjct 13753717 TTTGCTTACCAGCAAAGATTAGTCTTTGCTGATTGGGAGGAATTCTTTCCTTATCTTAGA 13753658
Query 563387 TTTTTTGTTTTACTGCCTCAATTGTAT-CAGTGTGAGTACA--TTCGAGAGTAACAGTTT 563443
| || |||||| || || |||| ||||| || || || || | | || |
Sbjct 13753657 TCTTGGCTTTTACATTTTCTATAGTATCCAGTG---GTTCAACCTCAAGCATGATGGTCT 13753601
Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| ||| |||| ||||||| |||||| |||||
Sbjct 13753600 TCCCAATAAGGGTTTTAATGAAAATCTGCAT 13753570
>seq10070
Length=1232
Score = 91.5 bits (100), Expect = 1e-12
Identities = 113/152 (74%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 550386 AAGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAA 550444
|||||| |||| | ||||| | |||| |||| ||||||||||| | || ||
Sbjct 930 AAGAAGGTTACCCACGCAGTTGTTACTGAACCAATCTATTTTAATGATGC-CAGTTGGAA 988
Query 550445 GCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCT 550504
|| || |||||||||||| ||||||||| || |||||| | | || |||||||| |||
Sbjct 989 GCAACCAAAGATGCTGGAACTATTGCTGGCCTGAATGTTATGAGAATCATCAATGAGCCT 1048
Query 550505 ACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
|| || ||||| |||| ||| | || |||||
Sbjct 1049 ACAGCAGCTGCTATTGCTTATTGCCTGGATAA 1080
>seq73
Length=8706776
Score = 89.7 bits (98), Expect = 4e-12
Identities = 148/212 (70%), Gaps = 5/212 (2%)
Strand=Plus/Minus
Query 563263 AGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322
|| |||||||||||||| || || ||| ||||| ||| ||| | | ||||
Sbjct 2651753 AGCACAAGATGAAGGGTGGACTCCTTCTCAATGTTGTAGTCAA----AGTACGTCTATCT 2651698
Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382
|| ||||| || || |||| || | |||| | |||||||||||||||||||| |||||
Sbjct 2651697 TCCAGTTGCTTACCAGCAACGATCAATCTTGGTTGATCAGGAGGAATTCCTTCGTTATCC 2651638
Query 563383 TGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTT 563442
|| || || ||||| || || || || | | | | || ||| ||| |||
Sbjct 2651637 TGGATCTTGGCTTTTATATTTTCTATAGTGTCCGAGGGTTCAACTTTGAG-CTAATAGTC 2651579
Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
|| || ||||| ||||| | |||||| |||||
Sbjct 2651578 TTCCCCGTAAGGGTTTTTATGAAAATCTGCAT 2651547
>seq291
Length=1898989
Score = 87.8 bits (96), Expect = 1e-11
Identities = 154/222 (69%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 550316 TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCT 550375
||| | |||||| ||||||| |||| || | | ||||| ||| | || || ||
Sbjct 881085 TTTGCTCCAGAATAAATTTCTGCTATAATTCTCACTAAAATAAAAGATACTGCTCACACT 881026
Query 550376 TTTGTTGGTCAAGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTC 550434
| | |||| |||||| |||| ||||||| | |||||| | ||||||||||| || |
Sbjct 881025 TAT-TTGGGAAAGAAGATTACCTATGCAGTTGTTACTGTAACGGCATATTTTAAAGATGC 880967
Query 550435 ACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTAT 550494
|| | || | | |||||| ||||| ||||||||| || ||||| | | || ||
Sbjct 880966 CCAGTGGCAGTCAAGCAAAGATTCTGGAACTATTGCTGGCCTGAATGTAATGAGGATCAT 880907
Query 550495 CAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
| ||| ||||| || ||||| ||| ||| | || | |||
Sbjct 880906 TACTGAGCCTACAGCAGCTGCTACTGCTTATCGTCTGGTTAA 880865
>seq353
Length=1223491
Score = 86.0 bits (94), Expect = 5e-11
Identities = 104/140 (74%), Gaps = 4/140 (3%)
Strand=Plus/Plus
Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310
||| ||||| || || || || ||||| ||| | | ||| |||||||| |||| |||
Sbjct 241186 CCTCAGACGAAGGACCAGGTGCAGGGTGGACTCTTTCTGG--ATATTGTAGTCAGAAAGA 241243
Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370
|| | |||||| || || || || ||||| || || || ||||| ||||| |||||
Sbjct 241244 GTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATG 241303
Query 563371 CCTTCTTTATCTTGAATTTT 563390
||||||||||| || || ||
Sbjct 241304 CCTTCTTTATCCTGGATCTT 241323
>seq324
Length=1494514
Score = 86.0 bits (94), Expect = 5e-11
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 720789 TCCATCCCTTCCTGCACGACCAATTTCTTGATAATATCCTTCAATATTTTTAGGTGCACC 720848
|||||| | || || | ||||||||| ||||||||| ||| || | |||||| |||||
Sbjct 949367 TCCATCACGGCCAGCTCTACCAATTTCCTGATAATATGATTCCATTTCTTTAGGAGCACC 949308
Query 720849 ATAATGTATAACTGCTCTCACATCACTTTTATTTATTCCCATTCCAAAAGCAATCGTCGC 720908
|||||| || ||| | | ||| |||||| || |||||||||||||| || || ||
Sbjct 949307 ATAATGAATGACTCTGCGAATGTCAGCTTTATTAATGCCCATTCCAAAAGCTATAGTAGC 949248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028635842661670
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |