Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq272 154 2e-32 seq255 84.2 3e-11 >seq272 Length=2150756 Score = 154 bits (170), Expect = 2e-32 Identities = 185/249 (74%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266 ||||| |||| | || || | | |||||| |||||||||| |||| | | ||| ||||| Sbjct 160554 ACTGAGGAACTTACAAGTTACCCATCACACTCAACTGTCTGGGAATAGCACCTGTGAGAT 160613 Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326 ||| |||||||| ||| | ||| |||| ||||| | |||| ||| ||| || || Sbjct 160614 CCACCTGACCTGCTCTCTGGAGAATCCAAATGATACTGTCTCATTCGGGTGGAAGCTCTC 160673 Query 2327 GGGCAAGACGCT-TCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCA 2385 | || | ||| |||||| || || |||||||| | |||||||||||||| | || Sbjct 160674 AGAAAACA-GCTCTCTACGAGAACCAAACCTCACCATCTCCTGGGACCCCATTAGTTCCA 160732 Query 2386 GTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCT 2445 |||| ||||||||||| ||||| || || ||| | || |||||| | || | | ||||| Sbjct 160733 GTGAACAGAACTACACCTGCATAGCTGAGAACCCCGTCAGCAATTTATCGTCCTCGGTCA 160792 Query 2446 CGGCCCAGA 2454 | ||||||| Sbjct 160793 CTGCCCAGA 160801 >seq255 Length=2342851 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 || || || ||||| || || | || |||||||| |||||||||||||| || || Sbjct 1422544 GGCAACCCCTCATGCTGCACATGGCACGTGTATCTCTGCTCTTCTCCAGAAGATACCACC 1422603 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | |||| ||||||| || || | ||||| || || || | || || | |||| | Sbjct 1422604 ACAGCTGCCCATTTCTGGAATTTTCCATCCCCTGCAGGCCTGGTCTCCACAAGCTCCATT 1422663 Query 14292 TCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAA 14351 || || |||| || || || || || | ||| || | | || || || || || || Sbjct 1422664 TCCTGGGTTTGGTCCTCCCCATCCCGTTGCCAAGTGAGGGTGATCTCCGCAGGGTAGAAC 1422723 Query 14352 CCCAAAGCCCAGCACC 14367 |||| ||||||||||| Sbjct 1422724 CCCAGAGCCCAGCACC 1422739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629185008222680