Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq536 136 5e-27
seq260 136 5e-27
seq131 127 2e-24
seq58 109 7e-19
seq2 107 2e-18
seq64 102 1e-16
seq11673 86.0 7e-12
>seq536
Length=337149
Score = 136 bits (150), Expect = 5e-27
Identities = 486/755 (64%), Gaps = 60/755 (8%)
Strand=Plus/Plus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931
||| ||||||||||| ||||| || || |||| | || || || || || || |||||
Sbjct 201776 CATCACTCCCATTTTCTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTC 201835
Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991
|||||| ||||| |||||||| | ||||||||| || || | | | | ||
Sbjct 201836 TAGTGAAATATTCTCCATAAAGTTAAATGGATT-------TTCTACTTTGAAAATCTTGT 201888
Query 36992 TAATTCC----TTCAG---AAGCCTATCCGCAACAAATTCTATGTATTTACACATTA--G 37042
||| || ||||| ||||||||| || |||||||| ||||| | ||| | |
Sbjct 201889 TAAAGCCCAGCTTCAGCATAAGCCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAG 201948
Query 37043 TTCATAGTTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTA 37101
| || || || |||||||| || | || | || ||| ||| ||| | | | |||
Sbjct 201949 TGCAA--TTCATCCCAATTAGCTTCTCAGGCAAGGCTTCTGTGAGGAACTCCTGAT-CTA 202005
Query 37102 TTATTACAGCATCTTTAACTATATTAACAATAACT-TCT--TCAGTTGGGGGATATTTTA 37158
| | | |||| ||| | | | | | ||| ||| || | ||| | | | |
Sbjct 202006 TCTTGAAGGCATTGATAATTGTTT---CTTTTACTCTCTGCTCTGATGG----TTTGTGA 202058
Query 37159 AATA----TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATC 37214
| | ||| | || | || ||||| ||||| |||||||| |||||||| || ||
Sbjct 202059 AGCAGGTGTTTGAGCATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATA 202118
Query 37215 AATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCT 37274
| |||||| ||||| || | || ||||| | |||| ||| ||
Sbjct 202119 AGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTT---------------- 202162
Query 37275 GCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCG 37334
|| ||||||||||| || | || | || ||||| ||||||| |||| ||
Sbjct 202163 ------GAGCCAGAAAAGAAGATTCTGTCCATAGCAGCAAAGGCTACAACACGTTCTCCA 202216
Query 37335 AAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAAT-TTAACACA 37393
| || | | || |||| | | | ||| || |||| | || |||||
Sbjct 202217 TAGGTAGCCTCTTTGTCCCCAATCAAATGCAAGGCCCA---TGGCTTTCTTCTTCACACA 202273
Query 37394 TTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGT 37453
||||||||| | || || |||||||| | |||||| ||| | ||||||||
Sbjct 202274 AGGCATTGTTTCAGTGGCATTGAAGAGAAATTCCCTTTCTTTGAAGTCTTTAATATAAGT 202333
Query 37454 ATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATA 37513
||||| || | ||||||||||||||| || || ||||| || || || || || |||||
Sbjct 202334 GTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATA 202393
Query 37514 AAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATT 37573
|||| | ||||| | | |||||| || | ||| || | || || || ||
Sbjct 202394 GAAACTGCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATGGCTCCACCAAATTCTCCTT 202453
Query 37574 AACTATCCCATCACTAGCTGCAAAGAAAGCAAGAA 37608
||||| | ||||| || ||| ||||||| ||||
Sbjct 202454 TACTATGCTATCACCTGCCGCAGAGAAAGCCAGAA 202488
>seq260
Length=2306558
Score = 136 bits (150), Expect = 5e-27
Identities = 315/472 (67%), Gaps = 7/472 (1%)
Strand=Plus/Plus
Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222
||| |||| | || ||| | ||| || ||||||| |||||||| || || | |||| |
Sbjct 2180271 TTTGAACATCAGGCAAGCAGAGTCATAAAGTAAACCCTCATCTCTGCTAATAAGTTCACT 2180330
Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282
|||| ||| || ||||| || || ||| || | | | ||||||| | |||||||
Sbjct 2180331 GGAAAC--TTAGGCCAGGCATCAATCCCTGTTTCTTGAACTAGAATATTGATTCAAAAGA 2180388
Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342
|| | ||||| | ||||| || || |||| ||||||| || | | | | || |
Sbjct 2180389 AACATAGAAGAAGTTTCCTTCCACAGCCACAAAGGCTACAACACATTCTCTGTAGGTAGC 2180448
Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402
| || |||||| | | ||| ||| ||| || ||| | |||||
Sbjct 2180449 TTCTTTGTCCCCAATCCAATGCAAGACCTAATTTGCTTTTTTCTTTACATAAGGCATTGT 2180508
Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462
|||||| || || |||||||| | |||||| |||| ||| ||| ||||| ||
Sbjct 2180509 TTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGAAATCTTTTA----AGTGTCAATAAG 2180564
Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522
| ||||||||||||| | || | |||||| | || || || || |||| |||||
Sbjct 2180565 GAGACTATACATTTCACAATGTAGTTTTTCA-TGGCAATTTGGAAGTCATAGAAACAGTG 2180623
Query 37523 AGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582
| |||| | | |||||| || | || | || | || |||||||| ||||| ||
Sbjct 2180624 AACTTCTGTAATTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTACTATGCC 2180683
Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634
|||||| |||||||||||| | || || ||||||| || ||| |||
Sbjct 2180684 ATCACTTGCTGCAAAGAAATTCATAATATGAGACATAAAATATCATTCCTCA 2180735
>seq131
Length=5549739
Score = 127 bits (140), Expect = 2e-24
Identities = 255/374 (68%), Gaps = 3/374 (1%)
Strand=Plus/Minus
Query 37262 CCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTAC 37321
||| ||||||| ||||||| ||||||||||| || ||||| | | ||||| ||||
Sbjct 3233251 CCAGAATATTGACACAAAAGAACCAGAAAAGAAGATTCCTTCCGCAGTGGCAAAGGCTAA 3233192
Query 37322 AAGACGTGTACCGAAAGTTGAA-CTATAATCAGAAATCCAtttttttGTCCAATCTGCCT 37380
|| | || | | | || | || | || || |||| | | ||||||||| |
Sbjct 3233191 AACATGT-TCTTGTAGGTAGCCTCTTTGTTCCCAA-TCCAACTCAAGGCCCAATCTGCTT 3233134
Query 37381 TTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTAT 37440
| || ||||| || ||||||| || || ||||||| | |||||| | ||
Sbjct 3233133 TCCTCTTCACACAAGGCATCCTTTCAATAGCATTGGAGAGAAATTCCCTTTCTTTAGAAT 3233074
Query 37441 CTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTA 37500
|| | || ||||| ||||| || | ||| ||||||| ||| || || ||||| | || |
Sbjct 3233073 CTTTAATGTAAGTGTCAATAAGGAGACTCTACATTTTAGAATGCATGTTTTCTGTGGCAA 3233014
Query 37501 TCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAG 37560
||| || ||||| ||||| | |||| | | |||||| || | ||| |
Sbjct 3233013 CCTGGAAGCCATAGAAACAGCCCACTTCTGTAATTTGAACTTCTTGGCTAAATTATTCCA 3232954
Query 37561 CTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAA 37620
| || |||||||| |||| |||||||| |||||||||||||| || ||| |||||
Sbjct 3232953 CCAAATTTTCATTTGCTATGCCATCACTTGCTGCAAAGAAAGCCAGGACAAGCAATATAA 3232894
Query 37621 AATGTCTTTCATCA 37634
||| || ||| |||
Sbjct 3232893 AATATCGTTCCTCA 3232880
>seq58
Length=10378366
Score = 109 bits (120), Expect = 7e-19
Identities = 312/479 (65%), Gaps = 33/479 (7%)
Strand=Plus/Plus
Query 37158 AAATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAAT 37217
|| ||||| |||| | | || |||||||||| |||||||| || || | |
Sbjct 1968790 AAGTATTTGAACATTGAGCAGGCAAAATCAC-----------TCATCTCTGCTAATAAGT 1968838
Query 37218 TCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATAT--TGCTG 37275
||||| ||||| || | || ||||| | | || ||| |||| || ||||| || ||
Sbjct 1968839 TCATTGGAAAATGTGAGACCAGGCATCAGCCGTCATTTCTTAAGTCAGAATATATTGATG 1968898
Query 37276 CAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGA 37335
||||||| ||||||||||| || |||| || ||||| |||||| | | ||
Sbjct 1968899 CAAAAGAACCAGAAAAGAAGATTTCTTCCACATTAGCAAAGGCTACATCATGCTCTCCAC 1968958
Query 37336 AAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATT 37395
|| | || | | ||| | |||| |||||| || || |||||
Sbjct 1968959 AAATAGACTTTTTATCCTGATTCCA-----------AATCTGTTTTCTTCTTCACACAAG 1969007
Query 37396 CAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTAT 37455
|| ||||| | | || |||| ||| | |||||||| || | ||| | ||
Sbjct 1969008 GCATCATTTCAGTGCCATTGAAGATAAATTCTTTTTCTTTGGAAT-TTTTA---ATGTGA 1969063
Query 37456 CAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAA 37515
|||| || ||||| || ||| |||| || || ||| | || || || || || ||||| |
Sbjct 1969064 CAATAAGGAAACTGTATATTACAGAATGTATTTTTCCTATGGCAATTTGGAATCCATAGA 1969123
Query 37516 AACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAA 37575
|||| ||||| | | ||||| || | ||| ||| | || ||||||| |
Sbjct 1969124 AACAGTGGGCTTCTGTAATTTGAATTTCTTGGCTAAATTGCTTCACCAATTTTTCATGTA 1969183
Query 37576 CTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634
||| ||||||| |||| | ||||| ||||||| | |||||||| ||| || |||
Sbjct 1969184 TTATGCCATCAC---CTGCTA--AAAGCCAGAACATGTGCTATAAAATCTCTCTCCTCA 1969237
>seq2
Length=46620681
Score = 107 bits (118), Expect = 2e-18
Identities = 98/124 (79%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257
|||||||||| || |||| |||||| ||||| || | || ||||| | |||||| || |
Sbjct 41377777 CTTCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCT 41377718
Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317
| | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| |
Sbjct 41377717 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 41377658
Query 37318 CTAC 37321
| ||
Sbjct 41377657 CCAC 41377654
>seq64
Length=9676502
Score = 102 bits (112), Expect = 1e-16
Identities = 100/129 (78%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259
|||||||| || || | |||||| ||||| || | || ||||| | |||| ||| ||
Sbjct 6351545 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 6351486
Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319
| ||| ||||||| |||||||| ||||||||||| || || || || || ||||| |||
Sbjct 6351485 AGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGGCT 6351426
Query 37320 ACAAGACGT 37328
|||| ||||
Sbjct 6351425 ACAACACGT 6351417
>seq11673
Length=1157
Score = 86.0 bits (94), Expect = 7e-12
Identities = 77/94 (82%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930
||| |||||||| | ||||| || || |||| |||| || || || || ||||| ||||
Sbjct 266 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 324
Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964
||||||| ||||| |||||||| |||||||||||
Sbjct 325 CTAGTGAAATATTCTCCATAAAGTCAAATGGATT 358
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592224376367320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |