Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq536 136 5e-27 seq260 136 5e-27 seq131 127 2e-24 seq58 109 7e-19 seq2 107 2e-18 seq64 102 1e-16 seq11673 86.0 7e-12 >seq536 Length=337149 Score = 136 bits (150), Expect = 5e-27 Identities = 486/755 (64%), Gaps = 60/755 (8%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| ||||||||||| ||||| || || |||| | || || || || || || ||||| Sbjct 201776 CATCACTCCCATTTTCTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTC 201835 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 |||||| ||||| |||||||| | ||||||||| || || | | | | || Sbjct 201836 TAGTGAAATATTCTCCATAAAGTTAAATGGATT-------TTCTACTTTGAAAATCTTGT 201888 Query 36992 TAATTCC----TTCAG---AAGCCTATCCGCAACAAATTCTATGTATTTACACATTA--G 37042 ||| || ||||| ||||||||| || |||||||| ||||| | ||| | | Sbjct 201889 TAAAGCCCAGCTTCAGCATAAGCCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAG 201948 Query 37043 TTCATAGTTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTA 37101 | || || || |||||||| || | || | || ||| ||| ||| | | | ||| Sbjct 201949 TGCAA--TTCATCCCAATTAGCTTCTCAGGCAAGGCTTCTGTGAGGAACTCCTGAT-CTA 202005 Query 37102 TTATTACAGCATCTTTAACTATATTAACAATAACT-TCT--TCAGTTGGGGGATATTTTA 37158 | | | |||| ||| | | | | | ||| ||| || | ||| | | | | Sbjct 202006 TCTTGAAGGCATTGATAATTGTTT---CTTTTACTCTCTGCTCTGATGG----TTTGTGA 202058 Query 37159 AATA----TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATC 37214 | | ||| | || | || ||||| ||||| |||||||| |||||||| || || Sbjct 202059 AGCAGGTGTTTGAGCATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATA 202118 Query 37215 AATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCT 37274 | |||||| ||||| || | || ||||| | |||| ||| || Sbjct 202119 AGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTT---------------- 202162 Query 37275 GCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCG 37334 || ||||||||||| || | || | || ||||| ||||||| |||| || Sbjct 202163 ------GAGCCAGAAAAGAAGATTCTGTCCATAGCAGCAAAGGCTACAACACGTTCTCCA 202216 Query 37335 AAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAAT-TTAACACA 37393 | || | | || |||| | | | ||| || |||| | || ||||| Sbjct 202217 TAGGTAGCCTCTTTGTCCCCAATCAAATGCAAGGCCCA---TGGCTTTCTTCTTCACACA 202273 Query 37394 TTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGT 37453 ||||||||| | || || |||||||| | |||||| ||| | |||||||| Sbjct 202274 AGGCATTGTTTCAGTGGCATTGAAGAGAAATTCCCTTTCTTTGAAGTCTTTAATATAAGT 202333 Query 37454 ATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATA 37513 ||||| || | ||||||||||||||| || || ||||| || || || || || ||||| Sbjct 202334 GTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATA 202393 Query 37514 AAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATT 37573 |||| | ||||| | | |||||| || | ||| || | || || || || Sbjct 202394 GAAACTGCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATGGCTCCACCAAATTCTCCTT 202453 Query 37574 AACTATCCCATCACTAGCTGCAAAGAAAGCAAGAA 37608 ||||| | ||||| || ||| ||||||| |||| Sbjct 202454 TACTATGCTATCACCTGCCGCAGAGAAAGCCAGAA 202488 >seq260 Length=2306558 Score = 136 bits (150), Expect = 5e-27 Identities = 315/472 (67%), Gaps = 7/472 (1%) Strand=Plus/Plus Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||| |||| | || ||| | ||| || ||||||| |||||||| || || | |||| | Sbjct 2180271 TTTGAACATCAGGCAAGCAGAGTCATAAAGTAAACCCTCATCTCTGCTAATAAGTTCACT 2180330 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 |||| ||| || ||||| || || ||| || | | | ||||||| | ||||||| Sbjct 2180331 GGAAAC--TTAGGCCAGGCATCAATCCCTGTTTCTTGAACTAGAATATTGATTCAAAAGA 2180388 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342 || | ||||| | ||||| || || |||| ||||||| || | | | | || | Sbjct 2180389 AACATAGAAGAAGTTTCCTTCCACAGCCACAAAGGCTACAACACATTCTCTGTAGGTAGC 2180448 Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402 | || |||||| | | ||| ||| ||| || ||| | ||||| Sbjct 2180449 TTCTTTGTCCCCAATCCAATGCAAGACCTAATTTGCTTTTTTCTTTACATAAGGCATTGT 2180508 Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462 |||||| || || |||||||| | |||||| |||| ||| ||| ||||| || Sbjct 2180509 TTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGAAATCTTTTA----AGTGTCAATAAG 2180564 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 | ||||||||||||| | || | |||||| | || || || || |||| ||||| Sbjct 2180565 GAGACTATACATTTCACAATGTAGTTTTTCA-TGGCAATTTGGAAGTCATAGAAACAGTG 2180623 Query 37523 AGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582 | |||| | | |||||| || | || | || | || |||||||| ||||| || Sbjct 2180624 AACTTCTGTAATTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTACTATGCC 2180683 Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634 |||||| |||||||||||| | || || ||||||| || ||| ||| Sbjct 2180684 ATCACTTGCTGCAAAGAAATTCATAATATGAGACATAAAATATCATTCCTCA 2180735 >seq131 Length=5549739 Score = 127 bits (140), Expect = 2e-24 Identities = 255/374 (68%), Gaps = 3/374 (1%) Strand=Plus/Minus Query 37262 CCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTAC 37321 ||| ||||||| ||||||| ||||||||||| || ||||| | | ||||| |||| Sbjct 3233251 CCAGAATATTGACACAAAAGAACCAGAAAAGAAGATTCCTTCCGCAGTGGCAAAGGCTAA 3233192 Query 37322 AAGACGTGTACCGAAAGTTGAA-CTATAATCAGAAATCCAtttttttGTCCAATCTGCCT 37380 || | || | | | || | || | || || |||| | | ||||||||| | Sbjct 3233191 AACATGT-TCTTGTAGGTAGCCTCTTTGTTCCCAA-TCCAACTCAAGGCCCAATCTGCTT 3233134 Query 37381 TTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTAT 37440 | || ||||| || ||||||| || || ||||||| | |||||| | || Sbjct 3233133 TCCTCTTCACACAAGGCATCCTTTCAATAGCATTGGAGAGAAATTCCCTTTCTTTAGAAT 3233074 Query 37441 CTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTA 37500 || | || ||||| ||||| || | ||| ||||||| ||| || || ||||| | || | Sbjct 3233073 CTTTAATGTAAGTGTCAATAAGGAGACTCTACATTTTAGAATGCATGTTTTCTGTGGCAA 3233014 Query 37501 TCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAG 37560 ||| || ||||| ||||| | |||| | | |||||| || | ||| | Sbjct 3233013 CCTGGAAGCCATAGAAACAGCCCACTTCTGTAATTTGAACTTCTTGGCTAAATTATTCCA 3232954 Query 37561 CTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAA 37620 | || |||||||| |||| |||||||| |||||||||||||| || ||| ||||| Sbjct 3232953 CCAAATTTTCATTTGCTATGCCATCACTTGCTGCAAAGAAAGCCAGGACAAGCAATATAA 3232894 Query 37621 AATGTCTTTCATCA 37634 ||| || ||| ||| Sbjct 3232893 AATATCGTTCCTCA 3232880 >seq58 Length=10378366 Score = 109 bits (120), Expect = 7e-19 Identities = 312/479 (65%), Gaps = 33/479 (7%) Strand=Plus/Plus Query 37158 AAATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAAT 37217 || ||||| |||| | | || |||||||||| |||||||| || || | | Sbjct 1968790 AAGTATTTGAACATTGAGCAGGCAAAATCAC-----------TCATCTCTGCTAATAAGT 1968838 Query 37218 TCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATAT--TGCTG 37275 ||||| ||||| || | || ||||| | | || ||| |||| || ||||| || || Sbjct 1968839 TCATTGGAAAATGTGAGACCAGGCATCAGCCGTCATTTCTTAAGTCAGAATATATTGATG 1968898 Query 37276 CAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGA 37335 ||||||| ||||||||||| || |||| || ||||| |||||| | | || Sbjct 1968899 CAAAAGAACCAGAAAAGAAGATTTCTTCCACATTAGCAAAGGCTACATCATGCTCTCCAC 1968958 Query 37336 AAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATT 37395 || | || | | ||| | |||| |||||| || || ||||| Sbjct 1968959 AAATAGACTTTTTATCCTGATTCCA-----------AATCTGTTTTCTTCTTCACACAAG 1969007 Query 37396 CAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTAT 37455 || ||||| | | || |||| ||| | |||||||| || | ||| | || Sbjct 1969008 GCATCATTTCAGTGCCATTGAAGATAAATTCTTTTTCTTTGGAAT-TTTTA---ATGTGA 1969063 Query 37456 CAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAA 37515 |||| || ||||| || ||| |||| || || ||| | || || || || || ||||| | Sbjct 1969064 CAATAAGGAAACTGTATATTACAGAATGTATTTTTCCTATGGCAATTTGGAATCCATAGA 1969123 Query 37516 AACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAA 37575 |||| ||||| | | ||||| || | ||| ||| | || ||||||| | Sbjct 1969124 AACAGTGGGCTTCTGTAATTTGAATTTCTTGGCTAAATTGCTTCACCAATTTTTCATGTA 1969183 Query 37576 CTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634 ||| ||||||| |||| | ||||| ||||||| | |||||||| ||| || ||| Sbjct 1969184 TTATGCCATCAC---CTGCTA--AAAGCCAGAACATGTGCTATAAAATCTCTCTCCTCA 1969237 >seq2 Length=46620681 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || |||| |||||| ||||| || | || ||||| | |||||| || | Sbjct 41377777 CTTCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCT 41377718 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 41377717 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 41377658 Query 37318 CTAC 37321 | || Sbjct 41377657 CCAC 41377654 >seq64 Length=9676502 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||||| || | || ||||| | |||| ||| || Sbjct 6351545 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 6351486 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||||| |||||||| ||||||||||| || || || || || ||||| ||| Sbjct 6351485 AGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGGCT 6351426 Query 37320 ACAAGACGT 37328 |||| |||| Sbjct 6351425 ACAACACGT 6351417 >seq11673 Length=1157 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || ||||| |||| Sbjct 266 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 324 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 ||||||| ||||| |||||||| ||||||||||| Sbjct 325 CTAGTGAAATATTCTCCATAAAGTCAAATGGATT 358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592224376367320