Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq82 129 5e-25
seq394 93.3 3e-14
>seq82
Length=8104705
Score = 129 bits (142), Expect = 5e-25
Identities = 127/164 (77%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|| || |||| ||| || |||||||| || || || || |||||||||||||| |||||
Sbjct 34502 AGGCCCGTGATGTGTGCAATCATGTAGGTAAGCAGGGAATAGCTGGCGATGTTGAAGGGC 34561
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| || || |||||||| || ||||||||||| ||||| || || ||||| || | |
Sbjct 34562 ACGCCCAGGCCCATGTCACCTGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 34621
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
||||| ||||| || | || ||||| ||||| || ||||| ||
Sbjct 34622 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATCAG 34665
>seq394
Length=841001
Score = 93.3 bits (102), Expect = 3e-14
Identities = 278/423 (66%), Gaps = 7/423 (2%)
Strand=Plus/Plus
Query 29791 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 29850
|||||| | ||||| | || | ||||| ||| || | | || ||||||| | ||
Sbjct 665324 AGCTGAATTTTCAGTGCCTCAATGTGATTCAGTTAAATACGTGCATCTCCCAAAGAATGC 665383
Query 29851 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACG-TGAGGAGAGAGTA 29909
| ||| || || || | || | ||| ||| || | |||||| | | || || | ||
Sbjct 665384 ATAAAGTCCCCTGGCTGCAGGTCCCTGATGTGCGCAACCATGTAAGGTAAGCAGGGCATA 665443
Query 29910 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 29969
|||| | ||| | || |||| || | |||||| | || ||||| ||||| | | ||
Sbjct 665444 GCTGTCAATGCTGAAAGGTATGCCCAAGCCCATGACTCCTGACCTATGGTACATCCAGCA 665503
Query 29970 CGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029
|| ||||| | || | | ||| ||||| || | | ||||| ||||| || |||
Sbjct 665504 GGACAGCTCCCATTCAC-CTTGTAGAACTGGCAGAGGACATGGCATGGAGGCAGCAGCAT 665562
Query 30030 GAGGCCCAAGTCTTTGGG-GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30088
|| || ||||| || |||||| | |||| ||| || | ||| |||| ||||||
Sbjct 665563 CAGAGGAAAATCTTTTGGAGTTCCAAACACACATGATAATTCTTCTGGCTTCAGGGTTGG 665622
Query 30089 TCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGC-- 30146
| ||||| || | | |||||||| || || || || | || || ||||
Sbjct 665623 TTTTGATGGTGTTGATCACTTTTTGCAGATGGTCTACTCCTTGATCAGAATAATCTGAAT 665682
Query 30147 CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAG 30206
|| || | |||| | ||| | ||||| ||||||||||| || || || || | ||
Sbjct 665683 CCACACCTTTGTGT--TTTGCCCAAAAATGTCTCCACTGGAAGCCATAAACTGGGACAAG 665740
Query 30207 GTC 30209
|||
Sbjct 665741 GTC 665743
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408555434322959
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |