Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_017979.1
Length=43376
Score E
Sequences producing significant alignments: (Bits) Value
seq3 95.1 3e-15
seq12 82.4 2e-11
>seq3
Length=41493964
Score = 95.1 bits (104), Expect = 3e-15
Identities = 178/262 (68%), Gaps = 0/262 (0%)
Strand=Plus/Minus
Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017
|||| | ||| || ||||| ||||||||||| | || || | || || || | | |
Sbjct 8287449 TTCCTTCTGGGTGCTATGGAAGAATAGCTCCACGTTCTGGCCTGGCTGCAAAATACTTCA 8287390
Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077
| ||||| || |||||||| || ||| ||| | ||| || || |||||||||| || |
Sbjct 8287389 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATATTGGTGTTGTGTTGT 8287330
Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137
|||||||| | | || ||| | | || ||||||| | || || ||| | ||||
Sbjct 8287329 TTAATTTTGGTAAAGAGAAGTTTGAAGTAAAAAAAGGTGATCGAATAGCACAGCTCATTT 8287270
Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGG 1197
||||| | | ||| |||| || || ||| | || | || | |||||||
Sbjct 8287269 GTGAACGGATTTTTTATCCAGATATAGAAGAAGTTCAAGTGTTGAATGACACTGAAAGGG 8287210
Query 1198 GTTCTGCAGGATTTGGGTCTAC 1219
|||| | ||| ||||| |||||
Sbjct 8287209 GTTCAGGAGGTTTTGGTTCTAC 8287188
>seq12
Length=22095427
Score = 82.4 bits (90), Expect = 2e-11
Identities = 184/272 (68%), Gaps = 11/272 (4%)
Strand=Plus/Plus
Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017
|||| | ||| || ||| | ||||||||||| || || || || || || | | | |
Sbjct 308706 TTCCTTCTGGGTGCTATAGAAGAATAGCTCCACATTCTGGGTTGGCTGCAAAATATTTCA 308765
Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077
| ||||| || |||||||| || ||| ||| | | | || | ||||||||| ||||
Sbjct 308766 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATGGAAAAAATGCTGGTGTTGTGTTAT 308825
Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137
|||||||| || | || ||| | | || |||||| || || ||| ||||
Sbjct 308826 TTAATTTTGGCAAAGAGAAGTTTGAAGTAAAAAAGGGTGATCAAATAGCACAGCACATTT 308885
Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATTCGG 1191
||| || || | ||||| ||||| | |||| || ||| || | ||| | |
Sbjct 308886 GTG-AATGGATTTTTTT--ATCCA--GATATAGAAGAAGTTCTAGTGTTGAATGATACTG 308940
Query 1192 AAAGGGGTTCTGCAGGATTTGGGTCTACCGGA 1223
|||||||||| | ||| ||||| ||||| |||
Sbjct 308941 AAAGGGGTTCAGGAGGTTTTGGTTCTACTGGA 308972
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 138661042446348
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |