Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 3e-15 seq12 82.4 2e-11 >seq3 Length=41493964 Score = 95.1 bits (104), Expect = 3e-15 Identities = 178/262 (68%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||||||||||| | || || | || || || | | | Sbjct 8287449 TTCCTTCTGGGTGCTATGGAAGAATAGCTCCACGTTCTGGCCTGGCTGCAAAATACTTCA 8287390 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||| | ||| || || |||||||||| || | Sbjct 8287389 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATATTGGTGTTGTGTTGT 8287330 Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137 |||||||| | | || ||| | | || ||||||| | || || ||| | |||| Sbjct 8287329 TTAATTTTGGTAAAGAGAAGTTTGAAGTAAAAAAAGGTGATCGAATAGCACAGCTCATTT 8287270 Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGG 1197 ||||| | | ||| |||| || || ||| | || | || | ||||||| Sbjct 8287269 GTGAACGGATTTTTTATCCAGATATAGAAGAAGTTCAAGTGTTGAATGACACTGAAAGGG 8287210 Query 1198 GTTCTGCAGGATTTGGGTCTAC 1219 |||| | ||| ||||| ||||| Sbjct 8287209 GTTCAGGAGGTTTTGGTTCTAC 8287188 >seq12 Length=22095427 Score = 82.4 bits (90), Expect = 2e-11 Identities = 184/272 (68%), Gaps = 11/272 (4%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||| | ||||||||||| || || || || || || | | | | Sbjct 308706 TTCCTTCTGGGTGCTATAGAAGAATAGCTCCACATTCTGGGTTGGCTGCAAAATATTTCA 308765 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | ||||| || |||||||| || ||| ||| | | | || | ||||||||| |||| Sbjct 308766 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATGGAAAAAATGCTGGTGTTGTGTTAT 308825 Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137 |||||||| || | || ||| | | || |||||| || || ||| |||| Sbjct 308826 TTAATTTTGGCAAAGAGAAGTTTGAAGTAAAAAAGGGTGATCAAATAGCACAGCACATTT 308885 Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATTCGG 1191 ||| || || | ||||| ||||| | |||| || ||| || | ||| | | Sbjct 308886 GTG-AATGGATTTTTTT--ATCCA--GATATAGAAGAAGTTCTAGTGTTGAATGATACTG 308940 Query 1192 AAAGGGGTTCTGCAGGATTTGGGTCTACCGGA 1223 |||||||||| | ||| ||||| ||||| ||| Sbjct 308941 AAAGGGGTTCAGGAGGTTTTGGTTCTACTGGA 308972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138661042446348