Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq14 125 6e-24
seq126 116 3e-21
seq13 104 2e-17
seq353 84.2 2e-11
>seq14
Length=21378024
Score = 125 bits (138), Expect = 6e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || || ||||| || ||||| || || |||||||| | || ||| | | |||| |||
Sbjct 6329939 ACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCCTCC 6329880
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| || || || |||||||||| |||||| ||||| || || ||||| || || ||||||
Sbjct 6329879 AGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGA 6329820
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
||||| ||| ||| | || | |||||| | || || || || |||| || |||
Sbjct 6329819 ATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTG 6329760
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | || || ||||| ||||||||
Sbjct 6329759 CCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731
>seq126
Length=5838822
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || || ||||| || ||||| || || ||||||| | || ||| | |||| |||
Sbjct 680946 ACCAAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAGAGAGTGTGGCCATCCTCC 680887
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| || || ||||||||||| | |||||| ||||| || || ||||| || || ||||||
Sbjct 680886 AGCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGA 680827
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
||||| ||| ||| | || | |||||| | || || || || |||| || |||
Sbjct 680826 ATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTG 680767
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | || || ||||| ||||||||
Sbjct 680766 CCCGTCATGGTCTTCACAAAGATCTGCAT 680738
>seq13
Length=21495731
Score = 104 bits (114), Expect = 2e-17
Identities = 143/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 101270 AGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTA 101329
|| || || ||||| || || |||||||| | || ||| | | |||| || | || |||
Sbjct 9191901 AGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTCTAGCTGTTTA 9191842
Query 101330 CCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 101389
||||||||||||| | |||| ||||| || || ||||| || | ||||||| |||| |
Sbjct 9191841 CCTGCAAATATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGTCTTGAAATTTTGCT 9191782
Query 101390 TTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAA 101449
|| ||| | || | |||||| | || || || || |||| || ||||| | |
Sbjct 9191781 TTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTATCAGG 9191722
Query 101450 GTTTTTACAAATATCTGCAT 101469
|| || ||||| ||||| ||
Sbjct 9191721 GTCTTCACAAAGATCTGAAT 9191702
>seq353
Length=1223491
Score = 84.2 bits (92), Expect = 2e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || ||||| || |||||||| || | | ||| | | |||| |||| |||
Sbjct 241205 TGCAGGGTGGACTCTTTCTGGATATTGTAGTCAGAAAGAGTACGGCCATCTTCCAGCTGC 241264
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
|| |||||||| || | | ||| || || || ||||||||||||||||| || || ||
Sbjct 241265 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGGATCTT 241323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396218111566431
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |