Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq14 125 6e-24 seq126 116 3e-21 seq13 104 2e-17 seq353 84.2 2e-11 >seq14 Length=21378024 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| || ||||| || || |||||||| | || ||| | | |||| ||| Sbjct 6329939 ACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCCTCC 6329880 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | || || || |||||||||| |||||| ||||| || || ||||| || || |||||| Sbjct 6329879 AGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGA 6329820 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||| ||| | || | |||||| | || || || || |||| || ||| Sbjct 6329819 ATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTG 6329760 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| |||||||| Sbjct 6329759 CCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731 >seq126 Length=5838822 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| || ||||| || || ||||||| | || ||| | |||| ||| Sbjct 680946 ACCAAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAGAGAGTGTGGCCATCCTCC 680887 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | || || ||||||||||| | |||||| ||||| || || ||||| || || |||||| Sbjct 680886 AGCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCTTGA 680827 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||| ||| | || | |||||| | || || || || |||| || ||| Sbjct 680826 ATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTG 680767 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| |||||||| Sbjct 680766 CCCGTCATGGTCTTCACAAAGATCTGCAT 680738 >seq13 Length=21495731 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 101270 AGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTA 101329 || || || ||||| || || |||||||| | || ||| | | |||| || | || ||| Sbjct 9191901 AGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTCTAGCTGTTTA 9191842 Query 101330 CCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 101389 ||||||||||||| | |||| ||||| || || ||||| || | ||||||| |||| | Sbjct 9191841 CCTGCAAATATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGTCTTGAAATTTTGCT 9191782 Query 101390 TTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAA 101449 || ||| | || | |||||| | || || || || |||| || ||||| | | Sbjct 9191781 TTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTATCAGG 9191722 Query 101450 GTTTTTACAAATATCTGCAT 101469 || || ||||| ||||| || Sbjct 9191721 GTCTTCACAAAGATCTGAAT 9191702 >seq353 Length=1223491 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || |||||||| || | | ||| | | |||| |||| ||| Sbjct 241205 TGCAGGGTGGACTCTTTCTGGATATTGTAGTCAGAAAGAGTACGGCCATCTTCCAGCTGC 241264 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || |||||||| || | | ||| || || || ||||||||||||||||| || || || Sbjct 241265 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGGATCTT 241323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396218111566431