Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq14 102 6e-17 seq126 89.7 4e-13 seq90 89.7 4e-13 seq13 86.0 5e-12 >seq14 Length=21378024 Score = 102 bits (112), Expect = 6e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| |||||| || || |||||||| || ||| | || Sbjct 6329948 AGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGG 6329889 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||| || || ||||||||||| ||||| ||||| | || | ||||||| Sbjct 6329888 CCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGGATGCCCTCC 6329829 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||| ||| | | | || | ||| ||||| | || Sbjct 6329828 TTGTCTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTG 6329769 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || ||||||| || || ||||| ||||||||| Sbjct 6329768 ATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATC 6329730 >seq126 Length=5838822 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| |||||| || || ||||||| || ||| | | Sbjct 680955 AGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAGAGAGTGTGG 680896 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||| || || |||||||| || ||||| ||||| | || | ||||||| Sbjct 680895 CCATCCTCCAGCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGGATGCCCTCC 680836 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||| ||| | | | || | ||| ||||| | || Sbjct 680835 TTGTCTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTG 680776 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || ||||||| || || ||||| ||||||||| Sbjct 680775 ATGGTCTTGCCCGTCATGGTCTTCACAAAGATCTGCATC 680737 >seq90 Length=7592057 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | |||| |||||||| || ||| || || || |||||||| ||||| Sbjct 464146 CCCCCCCTCAAGCGCAGGACCAAATGCAGAGTGGATTCCTTCTGGATATTGTAGTCAGAC 464087 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || |||| |||||| |||||||| ||||| | ||| || || | ||| Sbjct 464086 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 464027 Query 48660 ACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 464026 ATGCCCTCCTTGTC 464013 >seq13 Length=21495731 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 |||||| | ||| ||| |||||| || || |||||||| || ||| | || || || || Sbjct 9191911 CACCAAGTATAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTC 9191852 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 | ||| ||||| ||||||||||| |||| ||||| | || | |||||||| ||| Sbjct 9191851 TAGCTGTTTACCTGCAAATATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGTC 9191795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380879645463009