Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq191 168 1e-36
seq30 96.9 6e-15
seq54 84.2 4e-11
>seq191
Length=3957429
Score = 168 bits (186), Expect = 1e-36
Identities = 183/243 (75%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444
||| |||| ||||| | || | ||| || ||||| ||||||||| || || || ||
Sbjct 1892095 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGCGCTACTTGC 1892036
Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504
||||| |||| | || ||| | ||||| || || || || | |||||| ||||||
Sbjct 1892035 TCCCGGAGAAGGCCGGCTGTACTCGACAGGCCCGCATTCTCGGCCTTGAGTGTCTTCACC 1891976
Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564
|| ||||| || ||||||||||| ||||| || ||| ||||| |||||||| ||||
Sbjct 1891975 TTGTCCTCTAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 1891916
Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624
|||||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| ||
Sbjct 1891915 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 1891856
Query 241625 GAC 241627
|||
Sbjct 1891855 GAC 1891853
>seq30
Length=14751797
Score = 96.9 bits (106), Expect = 6e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|| ||||||| || || ||||||||||||||||| |||||| ||||||||||| |||
Sbjct 830312 GTATACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGG 830371
Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647
|| ||| || |||||| |||||||||||||| |||| || |||||| |||
Sbjct 830372 TTGCTCTTCCGATTACAAGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTGA 830431
Query 213648 GAC 213650
|||
Sbjct 830432 GAC 830434
>seq54
Length=10665802
Score = 84.2 bits (92), Expect = 4e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558
|||||||| |||||||||| || || | ||||| || | ||||| || | |||
Sbjct 3036208 TTCACTTTTTCCTCCAGCCTGGCAATCCTCTCCAGCTTCCTTTTCCGGCACTTCGAGGCG 3036149
Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618
|| | |||||||| | || ||| | ||||||||||| || |||||| |||||| |||
Sbjct 3036148 GCAATGCGGTTCCTCATTCGCTTCCTCTCCGCCTTGATACGCTCCTGGGACTCCATATCG 3036089
Query 241619 ATCGGAGAC 241627
|| ||||||
Sbjct 3036088 ATGGGAGAC 3036080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931387445950720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |