Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq191 168 1e-36 seq30 96.9 6e-15 seq54 84.2 4e-11 >seq191 Length=3957429 Score = 168 bits (186), Expect = 1e-36 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||||||||| || || || || Sbjct 1892095 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGCGCTACTTGC 1892036 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| |||| | || ||| | ||||| || || || || | |||||| |||||| Sbjct 1892035 TCCCGGAGAAGGCCGGCTGTACTCGACAGGCCCGCATTCTCGGCCTTGAGTGTCTTCACC 1891976 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || ||||| || ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 1891975 TTGTCCTCTAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 1891916 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| || Sbjct 1891915 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 1891856 Query 241625 GAC 241627 ||| Sbjct 1891855 GAC 1891853 >seq30 Length=14751797 Score = 96.9 bits (106), Expect = 6e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||||| || || ||||||||||||||||| |||||| ||||||||||| ||| Sbjct 830312 GTATACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGG 830371 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| || |||||| |||||||||||||| |||| || |||||| ||| Sbjct 830372 TTGCTCTTCCGATTACAAGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTGA 830431 Query 213648 GAC 213650 ||| Sbjct 830432 GAC 830434 >seq54 Length=10665802 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| |||||||||| || || | ||||| || | ||||| || | ||| Sbjct 3036208 TTCACTTTTTCCTCCAGCCTGGCAATCCTCTCCAGCTTCCTTTTCCGGCACTTCGAGGCG 3036149 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | || ||| | ||||||||||| || |||||| |||||| ||| Sbjct 3036148 GCAATGCGGTTCCTCATTCGCTTCCTCTCCGCCTTGATACGCTCCTGGGACTCCATATCG 3036089 Query 241619 ATCGGAGAC 241627 || |||||| Sbjct 3036088 ATGGGAGAC 3036080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931387445950720