Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq2 89.7 1e-12
seq64 87.8 3e-12
>seq2
Length=46620681
Score = 89.7 bits (98), Expect = 1e-12
Identities = 94/124 (76%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942
|||| ||||||||||||||||| || || || ||| || || ||||| || || ||||
Sbjct 41377652 TGGTGGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCAGGATCTTTTGCTGCTATATTCT 41377711
Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002
|||| ||| ||| || |||||| ||||| |||||||| || || |||||||| |
Sbjct 41377712 GGCTAAAGAAGAGAGGTCTCATGCCTGGGCTCACATTTTCCAATGAACTGATCAGCAGAG 41377771
Query 26003 ACGA 26006
| ||
Sbjct 41377772 ATGA 41377775
>seq64
Length=9676502
Score = 87.8 bits (96), Expect = 3e-12
Identities = 96/125 (77%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944
||||||||||||||||||||||| ||||| || ||||| ||||| | || ||||||
Sbjct 6351424 GTAGCCTTTGCTGCTGTGGAGGGAATCTTCTTTTCTGGTTCTTTTGCTTCAATATTCTGG 6351483
Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003
|||||| | | | |||| ||||| || || |||||||| || || || ||||| ||
Sbjct 6351484 CTCAAG-AAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGA 6351542
Query 26004 CGAGG 26008
||||
Sbjct 6351543 TGAGG 6351547
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928699865379520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |