Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq259 183 2e-40
seq362 120 2e-21
seq1181 111 1e-18
seq487 104 2e-16
seq74 104 2e-16
seq11036 102 5e-16
seq291 102 5e-16
seq8380 100 2e-15
seq6 100 2e-15
seq19 93.3 3e-13
seq455 91.5 1e-12
seq10070 89.7 3e-12
seq324 89.7 3e-12
seq73 89.7 3e-12
seq26 89.7 3e-12
>seq259
Length=2316233
Score = 183 bits (202), Expect = 2e-40
Identities = 374/551 (68%), Gaps = 10/551 (2%)
Strand=Plus/Plus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
|| || || || || || || || || || |||||||| || | || |||| ||
Sbjct 1742894 GCCATAGGCATCGACTTGGGTACCACCTATTCTTGTGTAGGGGTGTTCCAGCATGGCAAG 1742953
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|| || || |||||||||||||| || || | || || || ||||| | || ||
Sbjct 1742954 GTGGAGATCATTGCCAATGACCAGGGCAACCGCACCACCCCCAGCTATGTGGCCTTCACG 1743013
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508
|| || |||| |||||||| ||||| || ||| | || | || |||||| ||
Sbjct 1743014 GATACAGAACGGCTTATTGGGGATGCAGCCAAAAACCAGGTAGCCATGAATCCTCAGAAC 1743073
Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568
||| | |||||||| ||| | ||||||| | || ||| ||||| | ||| || ||
Sbjct 1743074 ACTGTCTTTGATGCCAAACGTCTGATTGGCAGGAAATTTAATGATCCTGTTGTGCAGTCA 1743133
Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG-- 474626
|||||| | |||||||||| | ||||| |||| || || || || | | |
Sbjct 1743134 GATATGAAACTTTGGCCTTTTCAAGTGATCAATGAAGGAGGCAAGCCCAAGGTGCTGGTG 1743193
Query 474627 --CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTT 474684
| ||| | | || |||| ||| || | || ||| |||||||||||||||| ||
Sbjct 1743194 TCCTATAAAGG--GGAGAAA--AAAGCTTTCTACCCTGAAGAAATTTCTTCAATGGTATT 1743249
Query 474685 AGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAA 474743
| || ||||| |||| || ||| | | | | || || | || |||| || |
Sbjct 1743250 GACTAAGATGAAGGAAACTGCAGAG-GCTTTTTTAGGCCACCTGATCACCAATGCTGTGA 1743308
Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803
| ||||| || || ||||| ||||| |||||||| || || || || ||||| || |
Sbjct 1743309 TCACTGTACCGGCCTATTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCAGGTGTGA 1743368
Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863
||||||| || ||||| || | || || |||||||| ||||| || || |||| ||||
Sbjct 1743369 TTGCAGGACTCAATGTGCTAAGAATCATCAATGAACCCACAGCTGCTGCCATTGCGTATG 1743428
Query 474864 GTCTTGATAAG 474874
| | ||||||
Sbjct 1743429 GCTTAGATAAG 1743439
Score = 143 bits (158), Expect = 2e-28
Identities = 544/841 (65%), Gaps = 16/841 (2%)
Strand=Plus/Plus
Query 475340 GAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGAT 475399
|| ||||| |||| |||| || |||||||| || | || || ||||| || ||
Sbjct 1743515 GATGATGGGATTTTTGAAGTAAAGGCTACAGCTGGGGACACCCACCTAGGTGGAGAGGAC 1743574
Query 475400 TTTGATAATAGACTTGT--ATCATGGTGTGTTGAAGATTTCAAGAGGAAA---AATAAAG 475454
|| || || || ||||| | || | ||| || || ||||| |||||| || ||||
Sbjct 1743575 TTCGACAACAGGCTTGTGAACCAC--TTTGTAGAGGAGTTCAAAAGGAAACACAAGAAAG 1743632
Query 475455 TTGATCTTTCAACATCTGCTAAAGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTA 475514
||| || | || | || | || ||| | | || ||||| || || || |
Sbjct 1743633 AC-ATCAGCCAGAACAAGCGA--GCCGTGAGGCGTTTGCGTACCGCTTGCGAGCGAGCCA 1743689
Query 475515 AGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAA 475574
|| | | || || || || ||| | | | | ||| ||||||| |||| |||||| |
Sbjct 1743690 AGAGGACCCTGTCATCCAGCACCCAAGCCAATCTGGAAATTGATTCACTTTATGAAGGCA 1743749
Query 475575 TTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTA 475634
|||| | | || ||| || || || |||||||| | ||| | || || ||||
Sbjct 1743750 TTGACTTCTACACATCTATCACCAGAGCCCGGTTTGAAGAGCTGTGTGCAGACCTGTTTA 1743809
Query 475635 GAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAG 475694
| || | ||||| || ||| ||| ||| ||||| | || | || || | ||
Sbjct 1743810 GGGGTACCCTGGAACCTGTGGAAAAAGCTCTTCGAGATGCCAAGATGGATAAGGCTAAAA 1743869
Query 475695 TCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAA-TGCTT 475753
||||||| |||||| | || || || || || | || || || | ||||| |||||
Sbjct 1743870 TCCATGACATTGTTTTAGTCGGGGGCTCCACTCGCATCCCTAAGGTGC-AGAAACTGCTT 1743928
Query 475754 TCATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGC 475812
|| | ||||||||||| | | || | || | ||||||||||| || || ||
Sbjct 1743929 -CAGGACTATTTTAATGGACGTGATCTCAACAAGAGCATCAATCCTGATGAGGCAGTAGC 1743987
Query 475813 ATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAA 475872
||||| ||||| || || ||||| ||||| ||| | | || || || | |
Sbjct 1743988 CTATGGGGCTGCAGTACAGGCAGCCATTTTGATGGGTGACAAATCTGAAAAGGTACAGGA 1744047
Query 475873 TATTGTACTTGTT-GACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTA 475931
| || ||||| ||||| | || || || |||| | || |||| ||| || | |
Sbjct 1744048 T-CTGCTTTTGTTGGACGTGGCCCCTCTGTCTCTAGGGTTAGAGACAGCTGGGGGCGTGA 1744106
Query 475932 TGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCA 475991
||||| || ||| | | ||| | | ||||| || | || | | || |||
Sbjct 1744107 TGACTGTGCTGATTAAGCGTAATTCCACCATCCCCACTAAGCAGACACAGATCTTCACCA 1744166
Query 475992 CTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCA 476051
| ||||| ||||| ||| | || ||||| | | ||| |||||| | | |
Sbjct 1744167 CATATTCAGATAACCAACCTGGGGTGCTGATCCAGGTATATGAGGGTGAACGGGCTATGA 1744226
Query 476052 CTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAG 476111
| || || ||| ||| || ||| | || || || |||||||| ||||| |
Sbjct 1744227 CACGTGACAACAACCTACTGGGGCGCTTTGACCTGACTGGAATACCTCCTGCACCCAGGG 1744286
Query 476112 GAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTG 476171
|||||||||| ||||| || || ||||| |||||||| ||||| ||||||||||| || |
Sbjct 1744287 GAGTTCCTCAGATTGAGGTGACCTTTGACATTGATGCCAATGGAATTCTTAATGTCACAG 1744346
Query 476172 C 476172
|
Sbjct 1744347 C 1744347
>seq362
Length=1080710
Score = 120 bits (132), Expect = 2e-21
Identities = 192/270 (71%), Gaps = 7/270 (3%)
Strand=Plus/Plus
Query 474642 AAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAA 474701
|||||||| |||| | || ||| |||||||| | ||| || | | ||||||||| | |
Sbjct 903933 AAACTAAAACATTTGCTCCAGAAGAAATTTCTGCTATGATTCTCACTAAAATGAAAGAGA 903992
Query 474702 CCGCGAGCTCATATCTTGGACAAGAAG-TAACTGATGCAGTAATTACTGTTCCAGCATAT 474760
| | | | ||| | || ||||| | || ||||| | | |||| |||| |||
Sbjct 903993 CTGTGGAGGCTTATTTGTGA--AGAAGGTTACCCATGCAATTGTCACTGAACCAGTCTAT 904050
Query 474761 TTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTT 474820
||||||||| | || | |||||||| |||||||| |||| ||||| || || ||||||
Sbjct 904051 TTTAATGATGC-CAGTGGCAAGCAACCAAAGATGCTGGAACTATTGCTGGCCTGAATGTT 904109
Query 474821 TTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAATTCT 474880
| | || || ||||| || |||||||| || |||||||| | || |||||||
Sbjct 904110 ATGAGGATCATCAATGAGCCTACAGCAGCTGCTATTGCTTATTGCCTGTATAAGAAGGAG 904169
Query 474881 GACAAAGAAGTAAATGTTTTAATCTTTGAT 474910
|| ||||||| || || | || ||||||
Sbjct 904170 GA-AAAGAAG--AACATTCTGATGTTTGAT 904196
Score = 107 bits (118), Expect = 1e-17
Identities = 167/235 (71%), Gaps = 4/235 (2%)
Strand=Plus/Plus
Query 474642 AAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAA 474701
|||||||| |||| | || ||| |||| ||| | ||| || | | ||||||||| | |
Sbjct 312913 AAACTAAAACATTTGCTCCAGAAGAAATCTCTGCTATGATTCTCACTAAAATGAAAGAGA 312972
Query 474702 CCGCGAGCTCATATCTTGGACAAGAAG-TAACTGATGCAGTAATTACTGTTCCAGCATAT 474760
| ||| | ||| | || ||||| | || ||||| | ||||| |||| |||
Sbjct 312973 CTGCGGAGGCTTATTTGTGA--AGAAGGTTACCCATGCAATTGTTACTAAACCAGTCTAT 313030
Query 474761 TTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTT 474820
||||||||| | || | |||||||| |||||||| |||| ||||| | || ||||||
Sbjct 313031 TTTAATGATGC-CAGTGGCAAGCAACCAAAGATGCTGGAACTATTGCTTGCCTGAATGTT 313089
Query 474821 TTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGA 474875
| || || ||||| || |||||||| || |||||||| | || ||| |||
Sbjct 313090 ATGAAGATCATCAATGAGCCTACAGCAGCTGCTATTGCTTATTGCCTGGATCAGA 313144
>seq1181
Length=43409
Score = 111 bits (122), Expect = 1e-18
Identities = 168/235 (71%), Gaps = 13/235 (6%)
Strand=Plus/Plus
Query 474642 AAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAA 474701
||||||| |||| | || ||| |||| ||| | || |||| ||||||||||| |
Sbjct 13049 AAACTAACACATTTGCTCCAGAAGAAATCTCTGCTATAATTTTCACCAAAATGAAAAA-- 13106
Query 474702 CCGCGAGCTCATATCTTGGACAAGAA-GTAACTGATGCAGTAATTACTGTTCCAGCATAT 474760
||| || |||| ||||| || || ||||||| |||||| |||| |||
Sbjct 13107 -----GGCTTAT---TTGG-GAAGAAGGTTACCCATGCAGTTGTTACTGAACCAGTGTAT 13157
Query 474761 TTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTT 474820
||||||||| | || | ||||||| |||||||| |||| ||||| | || ||||||
Sbjct 13158 TTTAATGATGC-CAGTGGGAAGCAACCAAAGATGCTGGAACTATTGCTAGCCTGAATGTT 13216
Query 474821 TTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGA 474875
| | || || ||||| || |||||||| || |||||||| | || |||||||
Sbjct 13217 ATGAGGATCATCAATGAGCCTACAGCAGCTGCTATTGCTTATTGCCTGGATAAGA 13271
Score = 87.8 bits (96), Expect = 1e-11
Identities = 149/212 (70%), Gaps = 13/212 (6%)
Strand=Plus/Plus
Query 474642 AAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAA 474701
||||||| |||| | | ||| |||| ||| | || || | ||||||||||| |
Sbjct 12068 AAACTAACACATTTGCTCTAGAAGAAATCTCTGCTATAATTCTCACCAAAATGAAAGAG- 12126
Query 474702 CCGCGAGCTCATATCTTGGACAAGAA-GTAACTGATGCAGTAATTACTGTTCCAGCATAT 474760
||| || |||| ||||| || || ||||||| |||||| |||| |||
Sbjct 12127 ------GCTTAT---TTGGG-AAGAATGTTACCCATGCAGTTGTTACTGAACCAGTCTAT 12176
Query 474761 TTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTT 474820
||||||||| | || | ||||||| |||||||| |||| ||||| || || ||||||
Sbjct 12177 TTTAATGATGC-CAGTGGGAAGCAACCAAAGATGCTGGAACTATTGCTGGCCTGAATGTT 12235
Query 474821 TTACGTATTATTAATGAACCAACAGCAGCCGC 474852
| | || || ||||| || |||||||| ||
Sbjct 12236 ATGAGGATCATCAATGAGCCTACAGCAGCTGC 12267
>seq487
Length=469708
Score = 104 bits (114), Expect = 2e-16
Identities = 155/215 (72%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 474663 AACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGA 474721
|| |||||||| ||| |||| | | ||||||| | || || ||| | ||| | |||
Sbjct 325185 AAGAAATTTCTGGTATGATTTTCACTATAATGAAAGAGACTGCTGAGG-CTTATTTGGGA 325127
Query 474722 CAAGAAGTA-ACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCA 474780
||||||| || ||||||| |||| || ||||| |||||||||||| || | ||
Sbjct 325126 -AAGAAGTTTACGCATGCAGTTGTTACAGTACCAGCCTATTTTAATGATGGCCAGCAACA 325068
Query 474781 AGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840
|||||| |||||||| ||| ||||| | || || ||| | | || || ||||| ||
Sbjct 325067 AGCAACCAAAGATGCTAGAACTATTGCTGTCCTGAAAGTTATGAGAATCATCAATGAGCC 325008
Query 474841 AACAGCAGCCGCACTTGCTTATGGTCTTGATAAGA 474875
|||||||| | || ||||| | || |||||||
Sbjct 325007 TACAGCAGCTCCTATTACTTATAGCCTGGATAAGA 324973
Score = 95.1 bits (104), Expect = 8e-14
Identities = 194/286 (68%), Gaps = 2/286 (1%)
Strand=Plus/Minus
Query 475877 GTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACT 475936
||||| |||| ||| | | || || | ||| ||||||| || ||||| | |||||
Sbjct 324379 GTACTGTTTGAAGTATGTACCCTGACACTTGGTATTGAAACTGTGGGAGGTGTCATGACC 324320
Query 475937 AATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTAT 475996
|| || || | || || | | | || |||||| || | | ||||| || |
Sbjct 324319 AAGCTGATAGCAAGGAACAATGTGGTACCTACCAAAAAGTCTCAGATCTTTTCTACAGCT 324260
Query 475997 TCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAA 476056
|||||||| ||| | ||||| | ||| | ||| ||||||| || | | | |||
Sbjct 324259 TCTGATAAGCAACCTACTGTTCCAATCAAGGTCTATGAAGGTAAATAACCCCTGAAAAAA 324200
Query 476057 GATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTC-CCAGAGGAGT 476115
|| | || || | || ||| |||| || ||||||||||||| |||| || ||
Sbjct 324199 GACACCCACCTTCTGAGTACATTTTATCTCACTGGAATTCCTCCTGCTCTCCAG-GGGGT 324141
Query 476116 TCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTT 476161
||||| |||||||| |||||||| || |||| ||||||||| ||
Sbjct 324140 CCCTCAGATTGAAGTCACTTTTGAGATAGATGTGAATGGTATTTTT 324095
>seq74
Length=8649107
Score = 104 bits (114), Expect = 2e-16
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| || | || || ||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct 7579834 ATGCTGTGGTCACAGTGCCAGCTTACTTCAATGATTCTCAGCGTCAGGCAACCAAAGATG 7579775
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| |||| ||||| ||||| ||||| | | || || ||||| ||||| || || ||
Sbjct 7579774 CCGGAACCATTGCTGGTCTCAATGTACTTAGGATAATCAATGAGCCAACTGCTGCTGCTA 7579715
Query 474855 TTGCTTATGGTCTTGATAAGAA 474876
||||||| ||| | || |||||
Sbjct 7579714 TTGCTTACGGTTTGGACAAGAA 7579693
Score = 96.9 bits (106), Expect = 2e-14
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110
|| || ||||| ||| |||||| | ||| | || ||| || || ||||| ||| |
Sbjct 7578392 ACCAAGGATAACAACCTACTTGGCAAGTTTGAACTCACAGGCATACCCCCTGCACCCCGT 7578333
Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170
|| |||||||| |||||||| || |||||||||||||| ||||| || || |||||| ||
Sbjct 7578332 GGTGTTCCTCAGATTGAAGTCACATTTGATATTGATGCCAATGGCATCCTGAATGTTTCT 7578273
Query 476171 GCT 476173
|||
Sbjct 7578272 GCT 7578270
Score = 95.1 bits (104), Expect = 8e-14
Identities = 120/165 (73%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387
|||| |||| |||||| | || || || ||| |||||| | ||| | || |||| ||
Sbjct 7580743 TGCAGTTGGCATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTCTTCCAGCATGGAAA 7580684
Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447
||| || |||||||||||||| || || || |||| || ||| ||||| | |||||
Sbjct 7580683 AGTGGAGATAATTGCCAATGATCAGGGGAACCGAACTACCCCAAGCTATGTCGCCTTTAC 7580624
Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492
||| || |||| | || || |||||||| || |||| | |||
Sbjct 7580623 TGACACAGAACGATTGATCGGCGATGCTGCAAAGAATCAGGTTGC 7580579
>seq11036
Length=1096
Score = 102 bits (112), Expect = 5e-16
Identities = 97/123 (79%), Gaps = 1/123 (1%)
Strand=Plus/Plus
Query 474753 CAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTC 474812
|||| |||||||||||| | || | |||||||| |||||||| |||| ||||| || |
Sbjct 1 CAGCCTATTTTAATGATGC-CACTGGCAAGCAACCAAAGATGCTGGAACTATTGCTGGCC 59
Query 474813 TTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATA 474872
| |||||| | | || || ||||| || |||||||| || |||||||||| || ||||
Sbjct 60 TGAATGTTATGAGAATCATCAATGAGCCTACAGCAGCTGCTATTGCTTATGGCCTGGATA 119
Query 474873 AGA 474875
|||
Sbjct 120 AGA 122
Score = 95.1 bits (104), Expect = 8e-14
Identities = 276/418 (66%), Gaps = 24/418 (6%)
Strand=Plus/Plus
Query 475791 TAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTC 475850
|||| || ||||| |||||||||||||| | | ||||||| || | | | | | | |
Sbjct 633 TAAACCCAGATGAGGCTGTTGCATATGGTGATACTGTCCAGGCTGGTGTACTCTTTGAT- 691
Query 475851 AATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTC 475910
|||| ||| || | || | | ||||| |||| ||| ||| | || | |||
Sbjct 692 GATCA----AGATAC-AGATGACCTAGTACTGCTTGATGTATGTCCCGTGACACTTGGTA 746
Query 475911 TTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCA 475970
||||||| || ||||| | |||| || || || || || ||| | || ||
Sbjct 747 TTGAAACTGTGGGAGGTGTCGTGACCAAACTGATACCAAGGAACACTGTGGTACCCACCA 806
Query 475971 AAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCT 476030
| || || | | ||||| || ||||||||||||| | ||||| | ||| || |||
Sbjct 807 AGAAGTCTCAGATCTTTTCTACAGCTTCTGATAATCAACCTACTGTTCCAATCAAAGTCT 866
Query 476031 TTGAAGGTGAAAGAAAATTCACT-AAAGATAATAACAAACTT---GGAACTTTTAATCTT 476086
||||| | |||||| | || ||| | | ||| | ||| || || ||| ||||
Sbjct 867 ATGAAGAT-AAAGAA---CCCCTGAAAAAAGACAACCACCTTCCAGGTACATTTGATCTC 922
Query 476087 GAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGAT 476146
|| ||||||||| | || || || || |||||||| |||||||| || |||
Sbjct 923 ACTGGAATTCCTCCT-------GTGGGGTCCCCCAGATTGAAGTCACTTTTGAGATAGAT 975
Query 476147 GCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATA 476204
| |||| ||||||| | || ||| |||||| |||| |||| |||||||
Sbjct 976 GTGAATGTTATTCTTTGGGCAACAGCTGAAGATAAA---GGTAAAAAGAACAAAAATA 1030
>seq291
Length=1898989
Score = 102 bits (112), Expect = 5e-16
Identities = 165/235 (70%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 474642 AAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAA 474701
||||||| ||| | || ||| |||||||| | || || | | ||||| ||| | |
Sbjct 881096 AAACTAAGACCTTTGCTCCAGAATAAATTTCTGCTATAATTCTCACTAAAATAAAAGATA 881037
Query 474702 CCGCGAGCTCATATCTTGGACAAGAAG-TAACTGATGCAGTAATTACTGTTCCAGCATAT 474760
| || | | ||| | ||| |||||| | || ||||||| ||||||| | ||||||
Sbjct 881036 CTGCTCACACTTATTTGGGA-AAGAAGATTACCTATGCAGTTGTTACTGTAACGGCATAT 880978
Query 474761 TTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTT 474820
||||| ||| | || | || ||| |||||| | |||| ||||| || || |||||
Sbjct 880977 TTTAAAGATGCCCAGTGGCAGTCAAGCAAAGATTCTGGAACTATTGCTGGCCTGAATGTA 880918
Query 474821 TTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGA 474875
| | || |||| ||| || |||||||| || ||||||| |||| | |||||
Sbjct 880917 ATGAGGATCATTACTGAGCCTACAGCAGCTGCTACTGCTTATCGTCTGGTTAAGA 880863
>seq8380
Length=1491
Score = 100 bits (110), Expect = 2e-15
Identities = 116/154 (75%), Gaps = 2/154 (1%)
Strand=Plus/Minus
Query 474723 AAGAAG-TAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAA 474781
|||||| | || |||| || |||||| |||| |||||||||||| | || | ||
Sbjct 462 AAGAAGGTTACCCATGCGGTTGTTACTGAACCAGTCTATTTTAATGATAC-CAGTGGGAA 404
Query 474782 GCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCA 474841
||||| |||||||| |||| ||||| || || |||||| | | || || ||||| ||
Sbjct 403 GCAACCAAAGATGCTGGAACTATTGCTGGCCTGAATGTTATGAGGATCATCAATGAGCCT 344
Query 474842 ACAGCAGCCGCACTTGCTTATGGTCTTGATAAGA 474875
|||||||| || |||||||| | || |||||||
Sbjct 343 ACAGCAGCTGCTATTGCTTATTGCCTGGATAAGA 310
>seq6
Length=30479472
Score = 100 bits (110), Expect = 2e-15
Identities = 114/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| |||||||| |||||||| || || | ||| |||||||||||||||||||||||
Sbjct 3763684 ATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 3763625
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
|| || ||||| ||| || ||| |||| || | | || || || || ||||
Sbjct 3763624 ATCCTGGATCTTGGCTTTTGCATTTTCTGTAGTGTCCGAGGGTTCAGCCTCCAGCGTAAC 3763565
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||| || || || || || || | |||||| ||
Sbjct 3763564 AGTCTTCCCTGTAAGGGTTTTTATGAAAATCTG 3763532
>seq19
Length=19581918
Score = 93.3 bits (102), Expect = 3e-13
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
||||||| ||||||| ||||| |||||||||||| | || || |||||||| |||||||
Sbjct 13351163 ATGCAGTTGTTACTGTACCAGCCTATTTTAATGATGCCCAGCGGCAAGCAACCAAAGATG 13351104
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840
| |||| ||||| || || |||||| | | || || ||||| ||
Sbjct 13351103 CTGGAACTATTGCTGGCCTGAATGTTATGAGGATCATCAATGAGCC 13351058
>seq455
Length=570085
Score = 91.5 bits (100), Expect = 1e-12
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 480553 GAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTC 480612
|||| | || ||||||||||| || || || ||| || || |||| | || |
Sbjct 193678 GAAGCCTCAGAACAAGATGAAGGGTGGACTCCTTCTAAATGTTGTAGTCAGACAAGGTAC 193619
Query 480613 TGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTT 480672
|||||| |||||||| |||||||| || |||| ||| |||||||||||||||||||
Sbjct 193618 GTCCATCTTCTAGTTGCTTACCAGCAAAGATCAGACTTTGCTGATCAGGAGGAATTCCTT 193559
Query 480673 CCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTA 480710
|||| | || ||||| ||| | | ||| ||||||
Sbjct 193558 CCTTATTCTGGATCTTGGCTTTTATATTTTCTATAGTA 193521
>seq10070
Length=1232
Score = 89.7 bits (98), Expect = 3e-12
Identities = 113/153 (74%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 474723 AAGAAG-TAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAA 474781
|||||| | || | ||||| |||||| ||| |||||||||||| | || ||
Sbjct 930 AAGAAGGTTACCCACGCAGTTGTTACTGAACCAATCTATTTTAATGATGC-CAGTTGGAA 988
Query 474782 GCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCA 474841
||||| |||||||| |||| ||||| || || |||||| | | || || ||||| ||
Sbjct 989 GCAACCAAAGATGCTGGAACTATTGCTGGCCTGAATGTTATGAGAATCATCAATGAGCCT 1048
Query 474842 ACAGCAGCCGCACTTGCTTATGGTCTTGATAAG 474874
|||||||| || |||||||| | || ||||||
Sbjct 1049 ACAGCAGCTGCTATTGCTTATTGCCTGGATAAG 1081
>seq324
Length=1494514
Score = 89.7 bits (98), Expect = 3e-12
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828
|||||||| || |||||||| ||||| |||||||| ||| || | |||||| || |||
Sbjct 949366 CCATCACGGCCAGCTCTACCAATTTCCTGATAATATGATTCCATTTCTTTAGGAGCACCA 949307
Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGC 627887
||||| || ||| | | || | ||||||||| ||||||||||| || || || ||
Sbjct 949306 TAATGAATGACTCTGCGAATGTCAGCTTTATTAATGCCCATTCCAAAAGCTATAGTAGC 949248
>seq73
Length=8706776
Score = 89.7 bits (98), Expect = 3e-12
Identities = 114/155 (74%), Gaps = 3/155 (2%)
Strand=Plus/Minus
Query 480616 TATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCT 480675
||||||| |||||||| ||||||| || | | | |||||||||||||||||||||| |
Sbjct 2651702 TATCTTCCAGTTGCTTACCAGCAACGATCAATCTTGGTTGATCAGGAGGAATTCCTTCGT 2651643
Query 480676 TGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAAGGGTA 480734
| || || ||||| ||| | | ||| ||||| || | | | | || ||| | | ||
Sbjct 2651642 TATCCTGGATCTTGGCTTTTATATTTTCTATAGTGTCCGAGGGTTCAACTTTGA--GCTA 2651585
Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| || || || || || || | |||||| ||
Sbjct 2651584 ATAGTCTTCCCCGTAAGGGTTTTTATGAAAATCTG 2651550
>seq26
Length=15501076
Score = 89.7 bits (98), Expect = 3e-12
Identities = 112/153 (73%), Gaps = 3/153 (2%)
Strand=Plus/Plus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| |||||||| ||||||| || || | ||| |||| ||||||||||||||||||
Sbjct 10001887 ATCTTCCAGTTGCTTATCAGCAAAGATTAGTCTTTGATGATTAGGAGGAATTCCTTCCTT 10001946
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
|| || ||||| || ||| ||| |||||||| | || | || | |||||
Sbjct 10001947 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCTG---GTTCAACCTCCATTGTAAT 10002003
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||| || | || || || || |||||||| ||
Sbjct 10002004 AGTCTTCTCTGTAAGGGTTTTTACGAAAATCTG 10002036
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267643743562484
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |