Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq35 297 2e-75
seq68 141 1e-28
seq231 102 9e-17
>seq35
Length=13537455
Score = 297 bits (328), Expect = 2e-75
Identities = 618/910 (68%), Gaps = 29/910 (3%)
Strand=Plus/Minus
Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111
|||||| || |||| ||| || || || || | || ||||| ||| || ||||| ||
Sbjct 11997582 CAGATGCTCATCCAAACACTGAACAGCAAAGAGATCGACGTCCAGGTCAAACTTATTGGC 11997523
Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171
|| | ||||| || |||| ||||||| || ||| || | ||||| || || ||
Sbjct 11997522 AAAAAAGTGGTGC---TTACGTAGTATCCAGTTCAAGTCGCCAGCTCCGAAAACACACAC 11997466
Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231
|| || | || || |||||||| || ||||| || || || | || | |||||||||
Sbjct 11997465 TGAGCGCACATGGACCCCGTTGCAGGGTGGGTAAAGTGCACCCTGGGCAATGTCACCTTC 11997406
Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291
||||||||||||| ||||||||||| | | ||||||||| || ||| || ||||
Sbjct 11997405 AAAGTACTGCCACTTGACAAACCTGGCAACGGACTGCATGTCAGACAAGTCATACTTGTG 11997346
Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351
| | || | | || || || | || || | ||| | |||||||| || | ||
Sbjct 11997345 GCTTAAGGACAGTGAGCCTGGGACCTCAGGGATCCTCTGAATAGTGGCCCAGAGATACTC 11997286
Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGA---TTAACCTGTCCCG 160408
|| |||||||||||||| | | ||| |||||||||| | || || | | || |
Sbjct 11997285 ATCTGGGCTGTACGTGTCTTGTGCCCACTCCATGAACT-TGTGAATGTTTTCAT-TCTCT 11997228
Query 160409 CAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGG 160468
|| || | | ||||| || | || ||||| || || ||||| || || | ||
Sbjct 11997227 -AGCACATACCTCACGTACTCCCTACTGACCACAAAATAGGCACTGCCCGAAAACAAAGG 11997169
Query 160469 TAT---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCAC 160525
| | | || ||| || ||||| | || || |||| || | ||| || |
Sbjct 11997168 TGTTTTGAGTGGAGGATGCC---CTTTGACAGTCCCCGTATTAGTCAACTTTCCATTAAT 11997112
Query 160526 CAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAG 160585
| | | || ||||||||||||| | || | | |||||| |||||| || ||
Sbjct 11997111 GACCACATGATGCTTCTTCCACCTTTCTTCTTTATTAGATGGCATCTTTTCCGTTTCCAG 11997052
Query 160586 ACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGG 160645
|||| |||| || ||| || |||| | |||| || || ||||| || || | ||
Sbjct 11997051 GTTGTTTTCACCCATGAACGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGG 11996992
Query 160646 AAAGTCGGTACCGCACAAG--TTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703
||| || || | ||||| || |||| ||||||||| || || |||| || |||
Sbjct 11996991 AAAATC--TAACCCACAAAGATTGATCAAGTACTTCCAATTGGCACTCATTCTGTAGAGG 11996934
Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763
||| ||||||| || | ||| ||||| || || |||||||| || || ||||| |||||
Sbjct 11996933 TCCTTCATGCAGTTGAGATCGGCCTGAACCCGACTCCAGGATGCATAAACTACATTCTCC 11996874
Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCC---ACCACCGCCAGA 160820
| | ||||||||||||||||||| |||||| || |||| ||| ||| | || | |
Sbjct 11996873 AACTGACTGGCCACAAAGACGTTACTGAAACAGGATGCGATGCCCATTACCGCTGCTATA 11996814
Query 160821 AAGAA--CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGT 160878
||| | | ||| || ||| ||| || || | ||| || | ||||||||| |
Sbjct 11996813 AAGGAGTCCTCTGAT-----TTTTTGTCTACATGAATGCAGTAGAAATTCTGAGGCATAT 11996759
Query 160879 AGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGG 160938
|||||||||| || | ||| || | ||| || || || ||||| | ||| || ||||| |
Sbjct 11996758 AGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATGGAGTATG 11996699
Query 160939 CTATCGGAAA 160948
| || || ||
Sbjct 11996698 CAATTGGGAA 11996689
>seq68
Length=9168529
Score = 141 bits (156), Expect = 1e-28
Identities = 209/296 (71%), Gaps = 0/296 (0%)
Strand=Plus/Minus
Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209
|| || || | ||| | | ||| || ||||| || || | || ||||||||||| |||
Sbjct 19203 TAAAGGGTGAGGCAGGCTGTTCTCGAGATCTTCCCAGAACTAAAGGTGTTGAAGAGACAC 19144
Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269
||| | || || |||||||||| || || ||||| || || | |||||||| ||||
Sbjct 19143 ATGTAACACCCCTCGTCCTCCAGCGTTGTGTTCCAGAAGGTGATGGTTGAGTTCTGGAGT 19084
Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329
|||| || || |||||||| | | || | ||| || || ||||| || ||| ||
Sbjct 19083 CCCAGCTCGGTGATGTTCACTCTGCCCCGGTAGGCAGGCTGGACCACAACCCCATGGCTC 19024
Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389
|||| |||| ||||||| || ||||| ||||| | |||||||| || || |||
Sbjct 19023 CTGCTGTAGGTAACCATGTTTTCTGGGCTTACAGCCTTCTTTTTCTGCCATGTCACAATC 18964
Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAG 168445
| | |||| | | ||||| |||||||| | || || || |||||||||||
Sbjct 18963 AAGGCTTCTTGGGCAGATTGCAGAGAACATCTTAAGGATGCAGGTGTGTTCAGCAG 18908
Score = 95.1 bits (104), Expect = 1e-14
Identities = 146/208 (70%), Gaps = 3/208 (1%)
Strand=Plus/Minus
Query 167895 TCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTC 167954
|| || ||||| ||| | || || | ||| || ||||| || || ||||||||
Sbjct 21337 TCAGTCACAGTCCCCTGGTACAGCACTTGGCAGATTACCTCC---TTCCCCACTTGACTT 21281
Query 167955 TTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACG 168014
|| || ||||| || | | ||||| || ||| ||| || || || | ||||| |
Sbjct 21280 TTGGGGTCTTTGACACGGAGTATGCTGGTGACAGATGTGGTCCCGTTAGGGTGTAACAGA 21221
Query 168015 GTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGT 168074
| | || ||||||||||||||||| || || ||||||||| | || | || || ||
Sbjct 21220 CTCTCAGTACTGTTCTCAATCCCTGACCCAGCAACCTTCCAGGAGATCATGGGTGCTGGG 21161
Query 168075 CGTGCTGTAGCAGAGCAGGTAATATTTA 168102
|| || || |||||||| || |||||||
Sbjct 21160 CGGGCAGTGGCAGAGCAAGTGATATTTA 21133
>seq231
Length=2670637
Score = 102 bits (112), Expect = 9e-17
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291
||||| || |||| |||| || |||| |||||| | ||||| || || | | | |
Sbjct 1429190 AGATACTTGGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAACGAATCCGCT 1429249
Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351
||||| || || ||||| |||| || || ||||| | ||| | ||||| | | ||
Sbjct 1429250 GGAATATAATTCTCATAGTTTTCCCTAGATGGTCCCAGAACAACAGGTACAGAGCCAGCC 1429309
Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411
|| || | ||||| |||||||| |||||| || |||| ||||||||||||||||
Sbjct 1429310 AAAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAG 1429369
Query 176412 AAATAGAACTTACA 176425
| ||| || |||||
Sbjct 1429370 AGATAAAATTTACA 1429383
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577129132159080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |