Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq35 297 2e-75 seq68 141 1e-28 seq231 102 9e-17 >seq35 Length=13537455 Score = 297 bits (328), Expect = 2e-75 Identities = 618/910 (68%), Gaps = 29/910 (3%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| || || || || | || ||||| ||| || ||||| || Sbjct 11997582 CAGATGCTCATCCAAACACTGAACAGCAAAGAGATCGACGTCCAGGTCAAACTTATTGGC 11997523 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 || | ||||| || |||| ||||||| || ||| || | ||||| || || || Sbjct 11997522 AAAAAAGTGGTGC---TTACGTAGTATCCAGTTCAAGTCGCCAGCTCCGAAAACACACAC 11997466 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | || || |||||||| || ||||| || || || | || | ||||||||| Sbjct 11997465 TGAGCGCACATGGACCCCGTTGCAGGGTGGGTAAAGTGCACCCTGGGCAATGTCACCTTC 11997406 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| ||||||||||| | | ||||||||| || ||| || |||| Sbjct 11997405 AAAGTACTGCCACTTGACAAACCTGGCAACGGACTGCATGTCAGACAAGTCATACTTGTG 11997346 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | || | | || || || | || || | ||| | |||||||| || | || Sbjct 11997345 GCTTAAGGACAGTGAGCCTGGGACCTCAGGGATCCTCTGAATAGTGGCCCAGAGATACTC 11997286 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGA---TTAACCTGTCCCG 160408 || |||||||||||||| | | ||| |||||||||| | || || | | || | Sbjct 11997285 ATCTGGGCTGTACGTGTCTTGTGCCCACTCCATGAACT-TGTGAATGTTTTCAT-TCTCT 11997228 Query 160409 CAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGG 160468 || || | | ||||| || | || ||||| || || ||||| || || | || Sbjct 11997227 -AGCACATACCTCACGTACTCCCTACTGACCACAAAATAGGCACTGCCCGAAAACAAAGG 11997169 Query 160469 TAT---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCAC 160525 | | | || ||| || ||||| | || || |||| || | ||| || | Sbjct 11997168 TGTTTTGAGTGGAGGATGCC---CTTTGACAGTCCCCGTATTAGTCAACTTTCCATTAAT 11997112 Query 160526 CAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAG 160585 | | | || ||||||||||||| | || | | |||||| |||||| || || Sbjct 11997111 GACCACATGATGCTTCTTCCACCTTTCTTCTTTATTAGATGGCATCTTTTCCGTTTCCAG 11997052 Query 160586 ACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGG 160645 |||| |||| || ||| || |||| | |||| || || ||||| || || | || Sbjct 11997051 GTTGTTTTCACCCATGAACGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGG 11996992 Query 160646 AAAGTCGGTACCGCACAAG--TTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 ||| || || | ||||| || |||| ||||||||| || || |||| || ||| Sbjct 11996991 AAAATC--TAACCCACAAAGATTGATCAAGTACTTCCAATTGGCACTCATTCTGTAGAGG 11996934 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 ||| ||||||| || | ||| ||||| || || |||||||| || || ||||| ||||| Sbjct 11996933 TCCTTCATGCAGTTGAGATCGGCCTGAACCCGACTCCAGGATGCATAAACTACATTCTCC 11996874 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCC---ACCACCGCCAGA 160820 | | ||||||||||||||||||| |||||| || |||| ||| ||| | || | | Sbjct 11996873 AACTGACTGGCCACAAAGACGTTACTGAAACAGGATGCGATGCCCATTACCGCTGCTATA 11996814 Query 160821 AAGAA--CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGT 160878 ||| | | ||| || ||| ||| || || | ||| || | ||||||||| | Sbjct 11996813 AAGGAGTCCTCTGAT-----TTTTTGTCTACATGAATGCAGTAGAAATTCTGAGGCATAT 11996759 Query 160879 AGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGG 160938 |||||||||| || | ||| || | ||| || || || ||||| | ||| || ||||| | Sbjct 11996758 AGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATGGAGTATG 11996699 Query 160939 CTATCGGAAA 160948 | || || || Sbjct 11996698 CAATTGGGAA 11996689 >seq68 Length=9168529 Score = 141 bits (156), Expect = 1e-28 Identities = 209/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| | | ||| || ||||| || || | || ||||||||||| ||| Sbjct 19203 TAAAGGGTGAGGCAGGCTGTTCTCGAGATCTTCCCAGAACTAAAGGTGTTGAAGAGACAC 19144 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| | || || |||||||||| || || ||||| || || | |||||||| |||| Sbjct 19143 ATGTAACACCCCTCGTCCTCCAGCGTTGTGTTCCAGAAGGTGATGGTTGAGTTCTGGAGT 19084 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| || || |||||||| | | || | ||| || || ||||| || ||| || Sbjct 19083 CCCAGCTCGGTGATGTTCACTCTGCCCCGGTAGGCAGGCTGGACCACAACCCCATGGCTC 19024 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 |||| |||| ||||||| || ||||| ||||| | |||||||| || || ||| Sbjct 19023 CTGCTGTAGGTAACCATGTTTTCTGGGCTTACAGCCTTCTTTTTCTGCCATGTCACAATC 18964 Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAG 168445 | | |||| | | ||||| |||||||| | || || || ||||||||||| Sbjct 18963 AAGGCTTCTTGGGCAGATTGCAGAGAACATCTTAAGGATGCAGGTGTGTTCAGCAG 18908 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/208 (70%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 167895 TCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTC 167954 || || ||||| ||| | || || | ||| || ||||| || || |||||||| Sbjct 21337 TCAGTCACAGTCCCCTGGTACAGCACTTGGCAGATTACCTCC---TTCCCCACTTGACTT 21281 Query 167955 TTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACG 168014 || || ||||| || | | ||||| || ||| ||| || || || | ||||| | Sbjct 21280 TTGGGGTCTTTGACACGGAGTATGCTGGTGACAGATGTGGTCCCGTTAGGGTGTAACAGA 21221 Query 168015 GTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGT 168074 | | || ||||||||||||||||| || || ||||||||| | || | || || || Sbjct 21220 CTCTCAGTACTGTTCTCAATCCCTGACCCAGCAACCTTCCAGGAGATCATGGGTGCTGGG 21161 Query 168075 CGTGCTGTAGCAGAGCAGGTAATATTTA 168102 || || || |||||||| || ||||||| Sbjct 21160 CGGGCAGTGGCAGAGCAAGTGATATTTA 21133 >seq231 Length=2670637 Score = 102 bits (112), Expect = 9e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| || |||| |||| || |||| |||||| | ||||| || || | | | | Sbjct 1429190 AGATACTTGGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAACGAATCCGCT 1429249 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || ||||| |||| || || ||||| | ||| | ||||| | | || Sbjct 1429250 GGAATATAATTCTCATAGTTTTCCCTAGATGGTCCCAGAACAACAGGTACAGAGCCAGCC 1429309 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 || || | ||||| |||||||| |||||| || |||| |||||||||||||||| Sbjct 1429310 AAAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAG 1429369 Query 176412 AAATAGAACTTACA 176425 | ||| || ||||| Sbjct 1429370 AGATAAAATTTACA 1429383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577129132159080