Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq73 104 4e-17
seq455 98.7 2e-15
seq6 93.3 8e-14
>seq73
Length=8706776
Score = 104 bits (114), Expect = 4e-17
Identities = 152/212 (72%), Gaps = 5/212 (2%)
Strand=Plus/Minus
Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208
|| || ||||| | || | ||| || ||| || ||||| | |||| ||| ||
Sbjct 2651753 AGCACAAGATGAAGGGTGGACTCCTTCTCAATGTTGTAGTCAAAGTACGT-CTA---TCT 2651698
Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268
|| | ||| || || |||| || ||||| ||||||||||||| |||||||| |||||
Sbjct 2651697 TCCAGTTGCTTACCAGCAACGATCAATCTTGGTTGATCAGGAGGAATTCCTTCGTTATCC 2651638
Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328
|| || |||| |||||||||| ||||| || || | ||||||| || | |||||
Sbjct 2651637 TGGATCTTGGCTTTTATATTTTCTATAGTGTCCGAGGGTTCAACTTTGAG-CTAATAGTC 2651579
Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || ||||||| || || |||||
Sbjct 2651578 TTCCCCGTAAGGGTTTTTATGAAAATCTGCAT 2651547
>seq455
Length=570085
Score = 98.7 bits (108), Expect = 2e-15
Identities = 150/212 (71%), Gaps = 5/212 (2%)
Strand=Plus/Minus
Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208
|| || ||||| | || | ||| || |||| || ||||| || || || | |||
Sbjct 193670 AGAACAAGATGAAGGGTGGACTCCTTCTAAATGTTGTAGTCAGACAAGGTACGTCCATCT 193611
Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268
|||| ||| || || ||||| || | || || ||||||||||| |||||||| ||||
Sbjct 193610 TCTAGTTGCTTACCAGCAAAGATCAGACTTTGCTGATCAGGAGGAATTCCTTCCTTATTC 193551
Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328
|| || |||| |||||||||| |||||| ||| ||||| | ||||| |||||
Sbjct 193550 TGGATCTTGGCTTTTATATTTTCTATAGTA----AAGGTTCAACCTTGAGAGTAATAGTC 193495
Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || | || | ||||| || || |||||
Sbjct 193494 TTCCCCATAAG-GGTTTTATGAAAATCTGCAT 193464
>seq6
Length=30479472
Score = 93.3 bits (102), Expect = 8e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| || | ||| || || ||||| || | ||| || ||||||||||| |||||||| ||
Sbjct 3763684 ATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 3763625
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324
||| || || |||| |||| |||| |||| || || | ||| | || || || |
Sbjct 3763624 ATCCTGGATCTTGGCTTTTGCATTTTCTGTAGTGTCCGAGGGTTCAGCCTCCAGCGTAAC 3763565
Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||| || ||||| || ||||||| || || |||||
Sbjct 3763564 AGTCTTCCCTGTAAGGGTTTTTATGAAAATCTGCAT 3763529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899514020176560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |