Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq73 104 4e-17 seq455 98.7 2e-15 seq6 93.3 8e-14 >seq73 Length=8706776 Score = 104 bits (114), Expect = 4e-17 Identities = 152/212 (72%), Gaps = 5/212 (2%) Strand=Plus/Minus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || || ||||| | || | ||| || ||| || ||||| | |||| ||| || Sbjct 2651753 AGCACAAGATGAAGGGTGGACTCCTTCTCAATGTTGTAGTCAAAGTACGT-CTA---TCT 2651698 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | ||| || || |||| || ||||| ||||||||||||| |||||||| ||||| Sbjct 2651697 TCCAGTTGCTTACCAGCAACGATCAATCTTGGTTGATCAGGAGGAATTCCTTCGTTATCC 2651638 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || || |||| |||||||||| ||||| || || | ||||||| || | ||||| Sbjct 2651637 TGGATCTTGGCTTTTATATTTTCTATAGTGTCCGAGGGTTCAACTTTGAG-CTAATAGTC 2651579 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||||| || || ||||| Sbjct 2651578 TTCCCCGTAAGGGTTTTTATGAAAATCTGCAT 2651547 >seq455 Length=570085 Score = 98.7 bits (108), Expect = 2e-15 Identities = 150/212 (71%), Gaps = 5/212 (2%) Strand=Plus/Minus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || || ||||| | || | ||| || |||| || ||||| || || || | ||| Sbjct 193670 AGAACAAGATGAAGGGTGGACTCCTTCTAAATGTTGTAGTCAGACAAGGTACGTCCATCT 193611 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 |||| ||| || || ||||| || | || || ||||||||||| |||||||| |||| Sbjct 193610 TCTAGTTGCTTACCAGCAAAGATCAGACTTTGCTGATCAGGAGGAATTCCTTCCTTATTC 193551 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || || |||| |||||||||| |||||| ||| ||||| | ||||| ||||| Sbjct 193550 TGGATCTTGGCTTTTATATTTTCTATAGTA----AAGGTTCAACCTTGAGAGTAATAGTC 193495 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | || | ||||| || || ||||| Sbjct 193494 TTCCCCATAAG-GGTTTTATGAAAATCTGCAT 193464 >seq6 Length=30479472 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || || ||||| || | ||| || ||||||||||| |||||||| || Sbjct 3763684 ATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 3763625 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| |||| |||| |||| || || | ||| | || || || | Sbjct 3763624 ATCCTGGATCTTGGCTTTTGCATTTTCTGTAGTGTCCGAGGGTTCAGCCTCCAGCGTAAC 3763565 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || ||||| || ||||||| || || ||||| Sbjct 3763564 AGTCTTCCCTGTAAGGGTTTTTATGAAAATCTGCAT 3763529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899514020176560